Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004813

Physical Location & Seq

Genomic Coordinates Forward (+)

20215024 .. 20217046

Gene Structure 2023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001757

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCACCTTCAAGACTCTCCGTTTCCCTCGCTCTGCTCCTCCTCGCCGTCTGGGGCTTCGGCCACGGCCACTCCGCCTCCTCCCGCGGCGCCCCGGCTCCGGCGGTGGACTGCTCGTCGTTGATCCTGAACATGGCGGACTGCTTGTCGTTTGTCTCCAACGACAGCAAGGCCGAGAAGCCGGAAGGGAGTTGCTGCACTGGACTCAAGACTGTGCTCAAAGCTGACGCCGCTTGTCTCTGTGAGGCCTTCAAGAGCAGCGCCCAGTTGGGTGTCGTCTTGAACATCACTAAGGCCATGTCCCTCCCCGCCGCTTGCAAAGTCTCCGCCCCCTCCGCCGCCAACTGTGGATTGTCTGTTTCTCCTGCTGGTGCTCCTGTTGCAACTCTTTCACCGCTATCTGCTCCAACAACTTCAGCTGCTGCTGCACCTGAATCACCTGCAGCTGCCGGAGGGAATGTGTTGACACCTGCAGCTTCTCCAGTGAACTCGGCTTCTGCTATGCTTTTCAGTTCAGTTACCCTGTTTTTGGGTCTTCTGGTTGCATCATTGCCTTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

188

Amino Acids

18.35

Weight (kDa)

7.53

Isoelectric Point (pI)

58.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	32 - 116	1.1e-16	Probable lipid transfer
Tryp_alpha_amyl	PF00234	38 - 116	1.5e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13820 AT2G13820 AT2G13820 AT5G64080 AT5G64080
fragaria_vesca	FvH4_5g30920
malus_domestica	MD03G1018400.v1.1 MD07G1177100.v1.1 MD08G1015200.v1.1 MD08G1015300.v1.1 MD08G1021700.v1.1 MD08G1221100.v1.1 MD09G1273500.v1.1 MD10G1180600.v1.1 MD15G1411800.v1.1
prunus_persica	Prupe.1G558100_v2.0.a1
pyrus_communis	pycom08g19180 pycom15g36660
rosa_chinensis	RchiOBHm_Chr7g0226231
rosa_laevigata	RLG00000001757
rosa_multiflora	Rmu_sc0001350.1_g000003 Rmu_sc0013267.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233110
rosa_rugosa	Rorug01G0471300 Rorug02G0477300 Rorug07G0235700
rosa_samantha	Rh7AG382700 Rh7BG369900 Rh7CG402200 Rh7DG381100
rosa_wichuraiana	Rw7G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	448, 478
Acc36I	ACCTGC	2 cut(s)	448, 478
AccB1I	GGYRCC	2 cut(s)	4, 89
AccII	CGCG	1 cut(s)	87
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	2 cut(s)	61, 67
AcuI	CTGAAG	1 cut(s)	399
AcyI	GRCGYC	2 cut(s)	90, 228
AfiI	CCNNNNNNNGG	3 cut(s)	100, 133, 529
AgsI	TTSAA	3 cut(s)	12, 253, 283
AhdI	GACNNNNNGTC	2 cut(s)	115, 145
AluBI	AGCT	4 cut(s)	224, 419, 446, 476
AluI	AGCT	4 cut(s)	224, 419, 446, 476
Alw21I	GWGCWC	2 cut(s)	219, 376
Alw26I	GTCTC	3 cut(s)	160, 242, 328
AlwI	GGATC	1 cut(s)	118
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	5 cut(s)	61, 67, 171, 246, 294
ApeKI	GCWGC	8 cut(s)	195, 258, 419, 422, 425, 443, 446, 473
AspLEI	GCGC	2 cut(s)	92, 263
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	384, 429
BanI	GGYRCC	2 cut(s)	4, 89
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	2 cut(s)	219, 376
BbvI	GCAGC	8 cut(s)	182, 270, 406, 409, 412, 433, 455, 485
BceAI	ACGGC	2 cut(s)	32, 82
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	3 cut(s)	160, 242, 328
BfmI	CTRYAG	2 cut(s)	441, 471
BfoI	RGCGCY	2 cut(s)	93, 264
BfuAI	ACCTGC	2 cut(s)	448, 478
Bme1390I	CCNGG	1 cut(s)	95
BmeRI	GACNNNNNGTC	2 cut(s)	115, 145
BmiI	GGNNCC	3 cut(s)	6, 91, 99
BmrFI	CCNGG	1 cut(s)	95
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	1 cut(s)	554
BmuI	ACTGGG	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	527
BpmI	CTGGAG	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	95
BsaHI	GRCGYC	2 cut(s)	90, 228
BsaJI	CCNNGG	3 cut(s)	64, 85, 93
BsaXI	ACNNNNNCTCC	6 cut(s)	56, 62, 86, 92, 444, 474
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 133, 529
Bse1I	ACTGG	3 cut(s)	205, 265, 482
Bse3DI	GCAATG	1 cut(s)	548
BseDI	CCNNGG	3 cut(s)	64, 85, 93
BseLI	CCNNNNNNNGG	3 cut(s)	100, 133, 529
BseMI	GCAATG	1 cut(s)	548
BseNI	ACTGG	3 cut(s)	205, 265, 482
BseRI	GAGGAG	3 cut(s)	29, 32, 70
BseXI	GCAGC	8 cut(s)	182, 270, 406, 409, 412, 433, 455, 485
BsgI	GTGCAG	2 cut(s)	181, 411
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	5 cut(s)	63, 69, 173, 248, 296
BshNI	GGYRCC	2 cut(s)	4, 89
BsiHKAI	GWGCWC	2 cut(s)	219, 376
BsiSI	CCGG	4 cut(s)	95, 101, 182, 450
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	3 cut(s)	100, 133, 529
BsmAI	GTCTC	3 cut(s)	160, 242, 328
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	5 cut(s)	63, 69, 173, 248, 296
Bsp1286I	GDGCHC	2 cut(s)	219, 376
Bsp143I	GATC	1 cut(s)	123
BspANI	GGCC	5 cut(s)	63, 69, 173, 248, 296
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	3 cut(s)	6, 91, 99
BspMAI	CTGCAG	2 cut(s)	445, 475
BspMI	ACCTGC	2 cut(s)	448, 478
BspPI	GGATC	1 cut(s)	118
BspT107I	GGYRCC	2 cut(s)	4, 89
BsrDI	GCAATG	1 cut(s)	548
BsrI	ACTGG	3 cut(s)	205, 265, 482
BssECI	CCNNGG	3 cut(s)	64, 85, 93
BssMI	GATC	1 cut(s)	123
BssNI	GRCGYC	2 cut(s)	90, 228
Bst4CI	ACNGT	2 cut(s)	214, 347
BstACI	GRCGYC	2 cut(s)	90, 228
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	2 cut(s)	64, 85
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	2 cut(s)	93, 264
BstHHI	GCGC	2 cut(s)	92, 263
BstKTI	GATC	1 cut(s)	126
BstMAI	GTCTC	3 cut(s)	160, 242, 328
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 335, 380, 425
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	2 cut(s)	441, 471
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	8 cut(s)	182, 270, 406, 409, 412, 433, 455, 485
BstV2I	GAAGAC	1 cut(s)	527
BsuRI	GGCC	5 cut(s)	63, 69, 173, 248, 296
BtgI	CCRYGG	2 cut(s)	64, 85
BtsIMutI	CAGTG	2 cut(s)	198, 489
BveI	ACCTGC	2 cut(s)	448, 478
Cac8I	GCNNGC	1 cut(s)	316
CaiI	CAGNNNCTG	1 cut(s)	422
CfoI	GCGC	2 cut(s)	92, 263
Cfr42I	CCGCGG	1 cut(s)	88
CseI	GACGC	1 cut(s)	236
CviAII	CATG	2 cut(s)	133, 298
DdeI	CTNAG	1 cut(s)	291
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
DriI	GACNNNNNGTC	2 cut(s)	115, 145
EaeI	YGGCCR	2 cut(s)	61, 67
Eam1105I	GACNNNNNGTC	2 cut(s)	115, 145
EciI	GGCGGA	4 cut(s)	64, 152, 316, 325
Eco147I	AGGCCT	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	399
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaeI	CATG	2 cut(s)	136, 301
FaiI	YATR	3 cut(s)	134, 299, 503
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	2 cut(s)	132, 297
FauI	CCCGC	2 cut(s)	92, 316
GlaI	GCGC	2 cut(s)	91, 262
GsuI	CTGGAG	1 cut(s)	465
HaeII	RGCGCY	2 cut(s)	93, 264
HaeIII	GGCC	5 cut(s)	63, 69, 173, 248, 296
HapII	CCGG	4 cut(s)	95, 101, 182, 450
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	2 cut(s)	92, 263
Hin1I	GRCGYC	2 cut(s)	90, 228
Hin1II	CATG	2 cut(s)	136, 301
Hin6I	GCGC	2 cut(s)	90, 261
HinP1I	GCGC	2 cut(s)	90, 261
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HinfI	GANTC	3 cut(s)	15, 204, 434
HpaII	CCGG	4 cut(s)	95, 101, 182, 450
HphI	GGTGA	2 cut(s)	384, 429
Hpy166II	GTNNAC	3 cut(s)	109, 465, 487
Hpy188I	TCNGA	1 cut(s)	563
Hpy188III	TCNNGA	5 cut(s)	12, 127, 208, 253, 280
Hpy8I	GTNNAC	3 cut(s)	109, 465, 487
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	18, 179, 259
HpyCH4III	ACNGT	2 cut(s)	214, 347
HpyCH4V	TGCA	7 cut(s)	198, 318, 383, 428, 443, 473, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 335, 380, 425
HpyF3I	CTNAG	1 cut(s)	291
Hsp92I	GRCGYC	2 cut(s)	90, 228
Hsp92II	CATG	2 cut(s)	136, 301
HspAI	GCGC	2 cut(s)	90, 261
KasI	GGCGCC	1 cut(s)	89
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	4 cut(s)	42, 103, 379, 409
Lsp1109I	GCAGC	8 cut(s)	182, 270, 406, 409, 412, 433, 455, 485
LweI	GCATC	1 cut(s)	554
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	1 cut(s)	527
MhlI	GDGCHC	2 cut(s)	219, 376
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	2 cut(s)	9, 198
MmeI	TCCRAC	2 cut(s)	183, 431
MnlI	CCTC	9 cut(s)	38, 50, 53, 88, 91, 238, 314, 343, 446
MspA1I	CMGCKG	3 cut(s)	87, 419, 446
MspI	CCGG	4 cut(s)	95, 101, 182, 450
MspR9I	CCNGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	4 cut(s)	230, 335, 380, 425
NarI	GGCGCC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	2 cut(s)	136, 301
NlaIV	GGNNCC	3 cut(s)	6, 91, 99
NmeAIII	GCCGAG	2 cut(s)	199, 470
PaqCI	CACCTGC	2 cut(s)	448, 478
PceI	AGGCCT	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	434
PleI	GAGTC	2 cut(s)	9, 198
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	2 cut(s)	9, 198
PspN4I	GGNNCC	3 cut(s)	6, 91, 99
PstI	CTGCAG	2 cut(s)	445, 475
PstNI	CAGNNNCTG	1 cut(s)	422
PvuII	CAGCTG	2 cut(s)	419, 446
SacII	CCGCGG	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	123
SchI	GAGTC	2 cut(s)	9, 198
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	2 cut(s)	219, 376
SetI	ASST	8 cut(s)	10, 226, 421, 433, 442, 448, 472, 478
SfaNI	GCATC	1 cut(s)	554
SfcI	CTRYAG	2 cut(s)	441, 471
SfoI	GGCGCC	1 cut(s)	91
Sfr303I	CCGCGG	1 cut(s)	88
SgrBI	CCGCGG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SseBI	AGGCCT	1 cut(s)	248
SspDI	GGCGCC	1 cut(s)	89
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	214, 347
TauI	GCSGC	4 cut(s)	90, 233, 314, 341
TfiI	GAWTC	1 cut(s)	434
TscAI	CASTG	2 cut(s)	205, 489
TseI	GCWGC	8 cut(s)	195, 258, 419, 422, 425, 443, 446, 473
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	2 cut(s)	205, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.