Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004813

Physical Location & Seq

Genomic Coordinates Reverse (-)

49372366 .. 49375026

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20263

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCACCTTCAAGACTCTCCCTTTCCCTCGCTCTGCTCCTCGTCGCCGTCTGGGGCTTCGTCCACGGCCACTCCGCCTCCTCCCGCGGCGCCCCTGCTCCTGCCGTGGACTGCTCGTCGTTGATCCTGAACATGGCGGACTGCTTGTCGTTTGTCTCCAACGGCAGCAAGGCCGAGAAGCCGGAAGGGAGTTGCTGCACTGGACTCAAGACTGTGCTCAAAGCTGACGCCGCTTGTCTCTGTGAGGCCTTCAAGAGCAGCGCCCAGTTGGGTGTCGTCTTGAACATCACTAAGGCCATGTCCCTCCCCGCCGCTTGCAAAGTCTCCGCCCCCTCCGCCACCAACTGTGGATTGTCTGTTTCTCCTGCTGGTGCTCCTGTTGCAACTCTTTCACCACTATCTGCTCCAACTTCAGCTGCTGCTGCACCTGAATCACCTGCAGCTGCCGGAGGGAATGTGTTAGCACCTGCAGCTTCTCCAGTGAACTCGGCTTCTGCCATGCTTTTCAGTTCAGTTACCCTGTTTTTGGGTCTTCTGGTTGCATCATTGCCTTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

186

Amino Acids

18.23

Weight (kDa)

8.14

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	32 - 116	1.7e-17	Probable lipid transfer
Tryp_alpha_amyl	PF00234	38 - 116	2.7e-13	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13820 AT2G13820 AT2G13820 AT5G64080 AT5G64080
fragaria_vesca	FvH4_5g30920
malus_domestica	MD03G1018400.v1.1 MD07G1177100.v1.1 MD08G1015200.v1.1 MD08G1015300.v1.1 MD08G1021700.v1.1 MD08G1221100.v1.1 MD09G1273500.v1.1 MD10G1180600.v1.1 MD15G1411800.v1.1
prunus_persica	Prupe.1G558100_v2.0.a1
pyrus_communis	pycom08g19180 pycom15g36660
rosa_chinensis	RchiOBHm_Chr7g0226231
rosa_laevigata	RLG00000001757
rosa_multiflora	Rmu_sc0001350.1_g000003 Rmu_sc0013267.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233110
rosa_rugosa	Rorug01G0471300 Rorug02G0477300 Rorug07G0235700
rosa_samantha	Rh7AG382700 Rh7BG369900 Rh7CG402200 Rh7DG381100
rosa_wichuraiana	Rw7G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	445, 475
Acc36I	ACCTGC	2 cut(s)	445, 475
AccB1I	GGYRCC	2 cut(s)	4, 89
AccII	CGCG	1 cut(s)	87
AciI	CCGC	9 cut(s)	75, 85, 87, 137, 231, 309, 312, 327, 336
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	1 cut(s)	67
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	2 cut(s)	90, 228
AfiI	CCNNNNNNNGG	2 cut(s)	133, 526
AgsI	TTSAA	3 cut(s)	12, 253, 283
AhdI	GACNNNNNGTC	2 cut(s)	115, 145
AluBI	AGCT	4 cut(s)	224, 416, 443, 473
AluI	AGCT	4 cut(s)	224, 416, 443, 473
Alw21I	GWGCWC	2 cut(s)	219, 376
Alw26I	GTCTC	3 cut(s)	160, 242, 328
AlwI	GGATC	1 cut(s)	118
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	4 cut(s)	67, 171, 246, 294
ApeKI	GCWGC	9 cut(s)	165, 195, 258, 416, 419, 422, 440, 443, 470
AspLEI	GCGC	2 cut(s)	92, 263
AsuHPI	GGTGA	2 cut(s)	384, 426
BanI	GGYRCC	2 cut(s)	4, 89
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	2 cut(s)	219, 376
BbvI	GCAGC	9 cut(s)	177, 182, 270, 403, 406, 409, 430, 452, 482
BceAI	ACGGC	4 cut(s)	32, 82, 89, 178
BcoDI	GTCTC	3 cut(s)	160, 242, 328
BfmI	CTRYAG	2 cut(s)	438, 468
BfoI	RGCGCY	2 cut(s)	93, 264
BfuAI	ACCTGC	2 cut(s)	445, 475
BmeRI	GACNNNNNGTC	2 cut(s)	115, 145
BmiI	GGNNCC	2 cut(s)	6, 91
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	1 cut(s)	551
BmuI	ACTGGG	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	191
BsaHI	GRCGYC	2 cut(s)	90, 228
BsaJI	CCNNGG	3 cut(s)	64, 85, 105
BsaXI	ACNNNNNCTCC	6 cut(s)	56, 62, 86, 92, 441, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 526
Bse1I	ACTGG	3 cut(s)	205, 265, 479
Bse3DI	GCAATG	1 cut(s)	545
BseDI	CCNNGG	3 cut(s)	64, 85, 105
BseLI	CCNNNNNNNGG	2 cut(s)	133, 526
BseMI	GCAATG	1 cut(s)	545
BseNI	ACTGG	3 cut(s)	205, 265, 479
BseRI	GAGGAG	2 cut(s)	29, 70
BseXI	GCAGC	9 cut(s)	177, 182, 270, 403, 406, 409, 430, 452, 482
BsgI	GTGCAG	2 cut(s)	181, 408
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	4 cut(s)	69, 173, 248, 296
BshNI	GGYRCC	2 cut(s)	4, 89
BsiHKAI	GWGCWC	2 cut(s)	219, 376
BsiSI	CCGG	2 cut(s)	182, 447
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	133, 526
BsmAI	GTCTC	3 cut(s)	160, 242, 328
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	4 cut(s)	69, 173, 248, 296
Bsp1286I	GDGCHC	2 cut(s)	219, 376
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	9 cut(s)	75, 85, 87, 137, 231, 309, 312, 327, 336
BspANI	GGCC	4 cut(s)	69, 173, 248, 296
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	6, 91
BspMAI	CTGCAG	2 cut(s)	442, 472
BspMI	ACCTGC	2 cut(s)	445, 475
BspPI	GGATC	1 cut(s)	118
BspT107I	GGYRCC	2 cut(s)	4, 89
BsrDI	GCAATG	1 cut(s)	545
BsrI	ACTGG	3 cut(s)	205, 265, 479
BssECI	CCNNGG	3 cut(s)	64, 85, 105
BssMI	GATC	1 cut(s)	123
BssNI	GRCGYC	2 cut(s)	90, 228
Bst4CI	ACNGT	2 cut(s)	214, 347
BstACI	GRCGYC	2 cut(s)	90, 228
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	3 cut(s)	64, 85, 105
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	2 cut(s)	93, 264
BstHHI	GCGC	2 cut(s)	92, 263
BstKTI	GATC	1 cut(s)	126
BstMAI	GTCTC	3 cut(s)	160, 242, 328
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 335, 380, 422, 470
BstSFI	CTRYAG	2 cut(s)	438, 468
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	9 cut(s)	177, 182, 270, 403, 406, 409, 430, 452, 482
BstV2I	GAAGAC	1 cut(s)	524
BsuRI	GGCC	4 cut(s)	69, 173, 248, 296
BtgI	CCRYGG	3 cut(s)	64, 85, 105
BtsIMutI	CAGTG	2 cut(s)	198, 486
BveI	ACCTGC	2 cut(s)	445, 475
Cac8I	GCNNGC	1 cut(s)	316
CaiI	CAGNNNCTG	1 cut(s)	419
CfoI	GCGC	2 cut(s)	92, 263
Cfr42I	CCGCGG	1 cut(s)	88
CseI	GACGC	1 cut(s)	236
CviAII	CATG	3 cut(s)	133, 298, 499
DdeI	CTNAG	1 cut(s)	291
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
DriI	GACNNNNNGTC	2 cut(s)	115, 145
EaeI	YGGCCR	1 cut(s)	67
Eam1105I	GACNNNNNGTC	2 cut(s)	115, 145
EciI	GGCGGA	4 cut(s)	64, 152, 316, 325
Eco147I	AGGCCT	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	396
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaeI	CATG	3 cut(s)	136, 301, 502
FaiI	YATR	3 cut(s)	134, 299, 500
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	3 cut(s)	132, 297, 498
FauI	CCCGC	2 cut(s)	92, 316
GlaI	GCGC	2 cut(s)	91, 262
GsuI	CTGGAG	1 cut(s)	462
HaeII	RGCGCY	2 cut(s)	93, 264
HaeIII	GGCC	4 cut(s)	69, 173, 248, 296
HapII	CCGG	2 cut(s)	182, 447
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	2 cut(s)	92, 263
Hin1I	GRCGYC	2 cut(s)	90, 228
Hin1II	CATG	3 cut(s)	136, 301, 502
Hin6I	GCGC	2 cut(s)	90, 261
HinP1I	GCGC	2 cut(s)	90, 261
HinfI	GANTC	3 cut(s)	15, 204, 431
HpaII	CCGG	2 cut(s)	182, 447
HphI	GGTGA	2 cut(s)	384, 426
Hpy166II	GTNNAC	3 cut(s)	64, 109, 484
Hpy188I	TCNGA	1 cut(s)	560
Hpy188III	TCNNGA	5 cut(s)	12, 127, 208, 253, 280
Hpy8I	GTNNAC	3 cut(s)	64, 109, 484
Hpy99I	CGWCG	2 cut(s)	47, 121
HpyAV	CCTTC	3 cut(s)	18, 179, 259
HpyCH4III	ACNGT	2 cut(s)	214, 347
HpyCH4V	TGCA	7 cut(s)	198, 318, 383, 425, 440, 470, 542
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 335, 380, 422, 470
HpyF3I	CTNAG	1 cut(s)	291
Hsp92I	GRCGYC	2 cut(s)	90, 228
Hsp92II	CATG	3 cut(s)	136, 301, 502
HspAI	GCGC	2 cut(s)	90, 261
KasI	GGCGCC	1 cut(s)	89
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	4 cut(s)	42, 103, 379, 409
Lsp1109I	GCAGC	9 cut(s)	177, 182, 270, 403, 406, 409, 430, 452, 482
LweI	GCATC	1 cut(s)	551
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	1 cut(s)	524
MhlI	GDGCHC	2 cut(s)	219, 376
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	2 cut(s)	9, 198
MmeI	TCCRAC	2 cut(s)	183, 431
MnlI	CCTC	8 cut(s)	38, 50, 88, 91, 238, 314, 343, 443
MspA1I	CMGCKG	3 cut(s)	87, 416, 443
MspI	CCGG	2 cut(s)	182, 447
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	5 cut(s)	230, 335, 380, 422, 470
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	3 cut(s)	136, 301, 502
NlaIV	GGNNCC	2 cut(s)	6, 91
NmeAIII	GCCGAG	2 cut(s)	199, 467
PaqCI	CACCTGC	2 cut(s)	445, 475
PceI	AGGCCT	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	431
PleI	GAGTC	2 cut(s)	9, 198
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	2 cut(s)	9, 198
PspN4I	GGNNCC	2 cut(s)	6, 91
PstI	CTGCAG	2 cut(s)	442, 472
PstNI	CAGNNNCTG	1 cut(s)	419
PvuII	CAGCTG	2 cut(s)	416, 443
SacII	CCGCGG	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	123
SchI	GAGTC	2 cut(s)	9, 198
SduI	GDGCHC	2 cut(s)	219, 376
SetI	ASST	8 cut(s)	10, 226, 418, 430, 439, 445, 469, 475
SfaNI	GCATC	1 cut(s)	551
SfcI	CTRYAG	2 cut(s)	438, 468
SfoI	GGCGCC	1 cut(s)	91
Sfr303I	CCGCGG	1 cut(s)	88
SgrBI	CCGCGG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	9 cut(s)	75, 85, 87, 137, 231, 309, 312, 327, 336
SspDI	GGCGCC	1 cut(s)	89
StuI	AGGCCT	1 cut(s)	248
TaaI	ACNGT	2 cut(s)	214, 347
TauI	GCSGC	3 cut(s)	90, 233, 314
TfiI	GAWTC	1 cut(s)	431
TscAI	CASTG	2 cut(s)	205, 486
TseI	GCWGC	9 cut(s)	165, 195, 258, 416, 419, 422, 440, 443, 470
TspRI	CASTG	2 cut(s)	205, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.