Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004813

Physical Location & Seq

Genomic Coordinates Reverse (-)

1179012 .. 1179209

Gene Structure 198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1015200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGCGGACTGCTTGTCATTTGTGTCGAATGGGAACACGGACACGAAGCTGGCAGAGACTTGCTGCAGTGGCCTCAAGACTGTGCTCAAAGCCGACGCTTCCTGCCTCTGTGAGACCTTCAAAAGCAGTGCTCAACTCGGCGTCGTCTTGAACATCACCAAGGGCACCGCCCTCCCCGCCGCTAAAGTCAACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

66

Amino Acids

6.69

Weight (kDa)

7.61

Isoelectric Point (pI)

20.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tryp_alpha_amyl	PF00234	1 - 46	4.5e-07	Protease inhibitor/seed storage/LTP family
LTP_2	PF14368	2 - 60	1.2e-09	Probable lipid transfer

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13820 AT2G13820 AT2G13820 AT5G64080 AT5G64080
fragaria_vesca	FvH4_5g30920
malus_domestica	MD03G1018400.v1.1 MD07G1177100.v1.1 MD08G1015200.v1.1 MD08G1015300.v1.1 MD08G1021700.v1.1 MD08G1221100.v1.1 MD09G1273500.v1.1 MD10G1180600.v1.1 MD15G1411800.v1.1
prunus_persica	Prupe.1G558100_v2.0.a1
pyrus_communis	pycom08g19180 pycom15g36660
rosa_chinensis	RchiOBHm_Chr7g0226231
rosa_laevigata	RLG00000001757
rosa_multiflora	Rmu_sc0001350.1_g000003 Rmu_sc0013267.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233110
rosa_rugosa	Rorug01G0471300 Rorug02G0477300 Rorug07G0235700
rosa_samantha	Rh7AG382700 Rh7BG369900 Rh7CG402200 Rh7DG381100
rosa_wichuraiana	Rw7G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AciI	CCGC	4 cut(s)	5, 168, 177, 180
AcyI	GRCGYC	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	121, 151
AhdI	GACNNNNNGTC	1 cut(s)	13
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw21I	GWGCWC	2 cut(s)	87, 133
Alw26I	GTCTC	2 cut(s)	50, 107
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	164
Bbv12I	GWGCWC	2 cut(s)	87, 133
BbvI	GCAGC	1 cut(s)	50
BcoDI	GTCTC	2 cut(s)	50, 107
BfmI	CTRYAG	1 cut(s)	64
BisI	GCNGC	2 cut(s)	64, 180
BlsI	GCNGC	2 cut(s)	65, 181
BmeRI	GACNNNNNGTC	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	50
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	164
BsiHKAI	GWGCWC	2 cut(s)	87, 133
BsmAI	GTCTC	2 cut(s)	50, 107
BsnI	GGCC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	3 cut(s)	87, 133, 167
BspACI	CCGC	4 cut(s)	5, 168, 177, 180
BspANI	GGCC	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	159
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	51
BstMAI	GTCTC	2 cut(s)	50, 107
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 176
BstSFI	CTRYAG	1 cut(s)	64
BstSLI	GKGCMC	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	72
BtsI	GCAGTG	2 cut(s)	73, 133
BtsIMutI	CAGTG	2 cut(s)	73, 133
Cac8I	GCNNGC	1 cut(s)	51
CseI	GACGC	2 cut(s)	104, 130
CviJI	RGCY	3 cut(s)	49, 72, 92
CviKI_1	RGCY	3 cut(s)	49, 72, 92
DriI	GACNNNNNGTC	1 cut(s)	13
Eam1105I	GACNNNNNGTC	1 cut(s)	13
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FauI	CCCGC	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	64, 180
Fsp4HI	GCNGC	2 cut(s)	64, 180
GluI	GCNGC	2 cut(s)	64, 180
HaeIII	GGCC	1 cut(s)	72
HgaI	GACGC	2 cut(s)	104, 130
Hin1I	GRCGYC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	76, 148
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	2 cut(s)	98, 146
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 176
Hsp92I	GRCGYC	1 cut(s)	141
LpnPI	CCDG	2 cut(s)	35, 115
Lsp1109I	GCAGC	1 cut(s)	50
MhlI	GDGCHC	3 cut(s)	87, 133, 167
MnlI	CCTC	3 cut(s)	83, 116, 182
MwoI	GCNNNNNNNGC	2 cut(s)	69, 176
NlaIV	GGNNCC	1 cut(s)	166
NmeAIII	GCCGAG	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	65, 181
PspN4I	GGNNCC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	68
SatI	GCNGC	2 cut(s)	64, 180
SduI	GDGCHC	3 cut(s)	87, 133, 167
SetI	ASST	2 cut(s)	51, 119
SfcI	CTRYAG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SsiI	CCGC	4 cut(s)	5, 168, 177, 180
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	26
TauI	GCSGC	1 cut(s)	182
TscAI	CASTG	2 cut(s)	73, 133
TseI	GCWGC	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	2 cut(s)	73, 133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.