Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004813

Physical Location & Seq

Genomic Coordinates Reverse (-)

25639729 .. 25640025

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1177100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAGCACTGTGGTGATGGTGATGGCGGTGCTGTCGTTTGGACTTGGGGACTGCCCGGCGCCGGTTCCTGCGGTGGACTGCTCGAGCCTGATCTTGAACATGGCGGACTGCTTGTCATTTGTGTCGAATGGGAACACGGACACGAAGCTGGCAGAGACTTGCTGCAGTGGCCTCAAGACTGTGCTCAAAGCCGACGCTTCCTGCCTCTGTGAGACCTTCAAAAGCAGTGCTCAACTCGGCGTCGTCTTGAACATCACCAAGGGCACCGCCCTCCCCGCCGCTAAAGTCAACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

99

Amino Acids

10.01

Weight (kDa)

5.55

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	19 - 93	1.6e-11	Probable lipid transfer
Tryp_alpha_amyl	PF00234	27 - 79	4.6e-08	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13820 AT2G13820 AT2G13820 AT5G64080 AT5G64080
fragaria_vesca	FvH4_5g30920
malus_domestica	MD03G1018400.v1.1 MD07G1177100.v1.1 MD08G1015200.v1.1 MD08G1015300.v1.1 MD08G1021700.v1.1 MD08G1221100.v1.1 MD09G1273500.v1.1 MD10G1180600.v1.1 MD15G1411800.v1.1
prunus_persica	Prupe.1G558100_v2.0.a1
pyrus_communis	pycom08g19180 pycom15g36660
rosa_chinensis	RchiOBHm_Chr7g0226231
rosa_laevigata	RLG00000001757
rosa_multiflora	Rmu_sc0001350.1_g000003 Rmu_sc0013267.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233110
rosa_rugosa	Rorug01G0471300 Rorug02G0477300 Rorug07G0235700
rosa_samantha	Rh7AG382700 Rh7BG369900 Rh7CG402200 Rh7DG381100
rosa_wichuraiana	Rw7G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	58, 263
AciI	CCGC	6 cut(s)	26, 71, 104, 267, 276, 279
AcyI	GRCGYC	2 cut(s)	59, 240
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	97, 220, 250
AhdI	GACNNNNNGTC	1 cut(s)	112
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw21I	GWGCWC	3 cut(s)	8, 186, 232
Alw26I	GTCTC	2 cut(s)	149, 206
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	25, 31, 247
AvaI	CYCGRG	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	266
BanI	GGYRCC	2 cut(s)	58, 263
Bbv12I	GWGCWC	3 cut(s)	8, 186, 232
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	2 cut(s)	10, 16
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	149, 206
BfmI	CTRYAG	1 cut(s)	163
BfoI	RGCGCY	1 cut(s)	62
BisI	GCNGC	2 cut(s)	163, 279
BlsI	GCNGC	2 cut(s)	164, 280
Bme1390I	CCNGG	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	82
BmiI	GGNNCC	3 cut(s)	60, 66, 265
BmrFI	CCNGG	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	56
BsaHI	GRCGYC	2 cut(s)	59, 240
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	2 cut(s)	58, 263
BsiHKAI	GWGCWC	3 cut(s)	8, 186, 232
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	2 cut(s)	56, 62
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	149, 206
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	82
Bsp1286I	GDGCHC	4 cut(s)	8, 186, 232, 266
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	6 cut(s)	26, 71, 104, 267, 276, 279
BspANI	GGCC	1 cut(s)	171
BspLI	GGNNCC	3 cut(s)	60, 66, 265
BspMAI	CTGCAG	1 cut(s)	167
BspT107I	GGYRCC	2 cut(s)	58, 263
BspTNI	GGTCTC	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	90
BssNI	GRCGYC	2 cut(s)	59, 240
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	10, 181
BstACI	GRCGYC	2 cut(s)	59, 240
BstC8I	GCNNGC	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	2 cut(s)	149, 206
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 275
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	171
BtsI	GCAGTG	2 cut(s)	172, 232
BtsIMutI	CAGTG	3 cut(s)	6, 172, 232
Cac8I	GCNNGC	1 cut(s)	150
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	61
CseI	GACGC	2 cut(s)	203, 229
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	4 cut(s)	87, 148, 171, 191
CviKI_1	RGCY	4 cut(s)	87, 148, 171, 191
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
DriI	GACNNNNNGTC	1 cut(s)	112
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	258
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	1 cut(s)	103
FaiI	YATR	1 cut(s)	101
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	99
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	163, 279
Fsp4HI	GCNGC	2 cut(s)	163, 279
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	2 cut(s)	163, 279
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	2 cut(s)	56, 62
HgaI	GACGC	2 cut(s)	203, 229
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	2 cut(s)	59, 240
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	56, 62
HphI	GGTGA	3 cut(s)	25, 31, 247
Hpy166II	GTNNAC	2 cut(s)	76, 289
Hpy188III	TCNNGA	3 cut(s)	94, 175, 247
Hpy8I	GTNNAC	2 cut(s)	76, 289
Hpy99I	CGWCG	2 cut(s)	197, 245
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	2 cut(s)	10, 181
HpyCH4V	TGCA	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 275
Hsp92I	GRCGYC	2 cut(s)	59, 240
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	1 cut(s)	59
KasI	GGCGCC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	90
LpnPI	CCDG	6 cut(s)	69, 75, 81, 101, 134, 214
Lsp1109I	GCAGC	1 cut(s)	149
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MhlI	GDGCHC	4 cut(s)	8, 186, 232, 266
Mly113I	GGCGCC	1 cut(s)	59
MnlI	CCTC	3 cut(s)	182, 215, 281
MslI	CAYNNNNRTG	1 cut(s)	11
MspI	CCGG	2 cut(s)	56, 62
MspR9I	CCNGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	168, 275
NarI	GGCGCC	1 cut(s)	59
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	3 cut(s)	60, 66, 265
NmeAIII	GCCGAG	1 cut(s)	216
OliI	CACNNNNGTG	1 cut(s)	11
PaeR7I	CTCGAG	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	164, 280
PluTI	GGCGCC	1 cut(s)	62
PspN4I	GGNNCC	3 cut(s)	60, 66, 265
PspXI	VCTCGAGB	1 cut(s)	82
PstI	CTGCAG	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	11
SatI	GCNGC	2 cut(s)	163, 279
Sau3AI	GATC	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	4 cut(s)	8, 186, 232, 266
SetI	ASST	2 cut(s)	150, 218
SfcI	CTRYAG	1 cut(s)	163
SfoI	GGCGCC	1 cut(s)	60
Sfr274I	CTCGAG	1 cut(s)	82
SlaI	CTCGAG	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	82, 173
SmoI	CTYRAG	2 cut(s)	82, 173
SsiI	CCGC	6 cut(s)	26, 71, 104, 267, 276, 279
SspDI	GGCGCC	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	10, 181
TaqI	TCGA	2 cut(s)	83, 125
TauI	GCSGC	1 cut(s)	281
TscAI	CASTG	3 cut(s)	13, 172, 232
TseI	GCWGC	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	3 cut(s)	13, 172, 232
XhoI	CTCGAG	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.