Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004813

Physical Location & Seq

Genomic Coordinates Reverse (-)

21819712 .. 21821265

Gene Structure 1554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCATTCTCATCAACACTCACCCTTTCCCTCACTCTGCTCCTCCTCGCCGTCATGCAAGGCCACGCCGCCCCCCGCGCCGCCCCGGCCCCGGCGGTGGACTGCTCCTCGTTGATCCTGAACATGGCGGACTGCTTGTCGTATGTTTCAAACGACAGCAAGACAGAGAAGCCGGAAGCGAGTTGCTGCACTGGACTCAAGACTGTGCTTAAGGCTGACGCTTCGTGTCTCTGTGAGGCTTTCAAGAGTAGCGGTCAGATGGGCATCGTTCTCAACATGACTAAGGCCATGGCTCTCCCCGCCGCTTGCAAAGTCTCCGCTCCTTCCGCCGCCAACTGTGGATTGGCTGTTGCTCCTGCTGGTGCTCCTGTTGCAACCCTTACGCCTCAAATTGCTCCAACAACTTCAGCTGGTGTTGCACCTGAATCATCTGCCGCAGGAGGGAATGTGGTAGCACCTGCATCTGCTCCAGCAAACTCAGCTTCTTTTATGCTTTTCAGTTCAGTTACCCTGTTTCTGGGCCTTTTGGTTGCGTCATTGCCTTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

184

Amino Acids

18.14

Weight (kDa)

6.51

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	19 - 113	1.2e-17	Probable lipid transfer
Tryp_alpha_amyl	PF00234	35 - 113	1.9e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13820 AT2G13820 AT2G13820 AT5G64080 AT5G64080
fragaria_vesca	FvH4_5g30920
malus_domestica	MD03G1018400.v1.1 MD07G1177100.v1.1 MD08G1015200.v1.1 MD08G1015300.v1.1 MD08G1021700.v1.1 MD08G1221100.v1.1 MD09G1273500.v1.1 MD10G1180600.v1.1 MD15G1411800.v1.1
prunus_persica	Prupe.1G558100_v2.0.a1
pyrus_communis	pycom08g19180 pycom15g36660
rosa_chinensis	RchiOBHm_Chr7g0226231
rosa_laevigata	RLG00000001757
rosa_multiflora	Rmu_sc0001350.1_g000003 Rmu_sc0013267.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233110
rosa_rugosa	Rorug01G0471300 Rorug02G0477300 Rorug07G0235700
rosa_samantha	Rh7AG382700 Rh7BG369900 Rh7CG402200 Rh7DG381100
rosa_wichuraiana	Rw7G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	466
Acc36I	ACCTGC	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	320
AccII	CGCG	1 cut(s)	78
AclWI	GGATC	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	390
AfiI	CCNNNNNNNGG	5 cut(s)	91, 97, 124, 441, 517
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	150, 244
AhdI	GACNNNNNGTC	1 cut(s)	136
AluBI	AGCT	2 cut(s)	410, 482
AluI	AGCT	2 cut(s)	410, 482
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	2 cut(s)	233, 319
AlwI	GGATC	1 cut(s)	109
AoxI	GGCC	4 cut(s)	61, 87, 285, 520
ApeKI	GCWGC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	88, 520
AsuC2I	CCSGG	2 cut(s)	86, 92
AsuHPI	GGTGA	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	1 cut(s)	35
BcnI	CCSGG	2 cut(s)	86, 92
BcoDI	GTCTC	2 cut(s)	233, 319
BfrI	CTTAAG	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	466
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	6 cut(s)	69, 81, 187, 303, 330, 435
BlsI	GCNGC	6 cut(s)	70, 82, 188, 304, 331, 436
Bme1390I	CCNGG	2 cut(s)	86, 92
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	88, 520
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	86, 92
BmsI	GCATC	2 cut(s)	273, 470
BpmI	CTGGAG	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	2 cut(s)	86, 92
BsaBI	GATNNNNATC	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	84, 90, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 97, 124, 441, 517
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	536
Bse8I	GATNNNNATC	1 cut(s)	263
BseDI	CCNNGG	3 cut(s)	84, 90, 288
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	5 cut(s)	91, 97, 124, 441, 517
BseMI	GCAATG	1 cut(s)	536
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	3 cut(s)	32, 35, 97
BseXI	GCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	4 cut(s)	63, 89, 287, 522
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	3 cut(s)	86, 92, 173
BslI	CCNNNNNNNGG	5 cut(s)	91, 97, 124, 441, 517
BsmAI	GTCTC	2 cut(s)	233, 319
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	4 cut(s)	63, 89, 287, 522
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	114
Bsp19I	CCATGG	1 cut(s)	288
BspANI	GGCC	4 cut(s)	63, 89, 287, 522
BspCNI	CTCAG	1 cut(s)	491
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	466
BspPI	GGATC	1 cut(s)	109
BspTI	CTTAAG	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	3 cut(s)	84, 90, 288
BssMI	GATC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	205, 338
BstAFI	CTTAAG	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	282, 478
BstDSI	CCRYGG	1 cut(s)	288
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	2 cut(s)	233, 319
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 86, 299, 326, 371, 416, 479
BstSCI	CCNGG	2 cut(s)	84, 90
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	173
BsuRI	GGCC	4 cut(s)	63, 89, 287, 522
BtgI	CCRYGG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	88, 520
CseI	GACGC	2 cut(s)	227, 522
CviAII	CATG	4 cut(s)	55, 124, 277, 289
DdeI	CTNAG	2 cut(s)	282, 478
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
DriI	GACNNNNNGTC	1 cut(s)	136
Eam1105I	GACNNNNNGTC	1 cut(s)	136
EciI	GGCGGA	2 cut(s)	143, 316
Eco130I	CCWWGG	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	4 cut(s)	58, 127, 280, 292
FaiI	YATR	6 cut(s)	56, 125, 144, 278, 290, 491
FatI	CATG	4 cut(s)	54, 123, 276, 288
FauI	CCCGC	2 cut(s)	83, 307
Fnu4HI	GCNGC	6 cut(s)	69, 81, 187, 303, 330, 435
Fsp4HI	GCNGC	6 cut(s)	69, 81, 187, 303, 330, 435
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	6 cut(s)	69, 81, 187, 303, 330, 435
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	4 cut(s)	63, 89, 287, 522
HapII	CCGG	3 cut(s)	86, 92, 173
HgaI	GACGC	2 cut(s)	227, 522
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	58, 127, 280, 292
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	2 cut(s)	195, 425
HpaII	CCGG	3 cut(s)	86, 92, 173
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	258, 551
Hpy188III	TCNNGA	3 cut(s)	118, 199, 244
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	2 cut(s)	205, 338
HpyCH4V	TGCA	6 cut(s)	58, 189, 309, 374, 419, 461
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 86, 299, 326, 371, 416, 479
HpyF3I	CTNAG	2 cut(s)	282, 478
Hsp92II	CATG	4 cut(s)	58, 127, 280, 292
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	114
LmnI	GCTCC	7 cut(s)	45, 110, 325, 358, 370, 400, 472
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	2 cut(s)	273, 470
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	1 cut(s)	116
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	422
MnlI	CCTC	7 cut(s)	41, 53, 56, 118, 229, 396, 434
MseI	TTAA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	410
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	3 cut(s)	86, 92, 173
MspR9I	CCNGG	2 cut(s)	86, 92
Mva1269I	GAATGC	1 cut(s)	5
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	7 cut(s)	77, 86, 299, 326, 371, 416, 479
NciI	CCSGG	2 cut(s)	86, 92
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	4 cut(s)	58, 127, 280, 292
NlaIV	GGNNCC	1 cut(s)	90
PaqCI	CACCTGC	1 cut(s)	466
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	6 cut(s)	70, 82, 188, 304, 331, 436
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	2 cut(s)	88, 520
PvuII	CAGCTG	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	6 cut(s)	69, 81, 187, 303, 330, 435
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	2 cut(s)	88, 520
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	2 cut(s)	86, 92
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	4 cut(s)	412, 424, 460, 484
SfaNI	GCATC	2 cut(s)	273, 470
SmlI	CTYRAG	2 cut(s)	197, 209
SmoI	CTYRAG	2 cut(s)	197, 209
Sse9I	AATT	1 cut(s)	390
StyD4I	CCNGG	2 cut(s)	84, 90
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	205, 338
TasI	AATT	1 cut(s)	390
TauI	GCSGC	5 cut(s)	71, 83, 305, 332, 437
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	186
TspRI	CASTG	1 cut(s)	196
Vha464I	CTTAAG	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.