Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004813

Physical Location & Seq

Genomic Coordinates Reverse (-)

51394039 .. 51397047

Gene Structure 3009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG402200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCACCTTCTAGACTCTCCCTTTCCCTCGCTCTGCTCCTCGTCGCCGTCTGGGGCTTCGGCCACGGCCACTCCGCCTCCTCACGCGGCGCCCCTGCTCCTGCCGTGGACTGCTCGTCGTTGATCCTGAACATGGCGGACTGCTTGTCGTTTGTCTCCAACGGCAGCAAGGCCGAGAAGCCGGAAGGGAGTTGCTGCACTGGACTCAAGACTGTGCTCAAAGCTGACGCCGCTTGTCTCTGTGAGGCCTTCAAGAGCAGCGCCCAGTTGGGTGTCGTCTTGAACATCACTAAGGCCATGTCCCTCCCCGCCGCTTGCAAAGTCTCCGCCCCCTCCGCCACCAACTGTGGATTGTCTGTTTCTCCTGCTGGTGCTCCTGGTATGTTCTTCTTCTTAACTAGTCAATTTGCTCTTAGATTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTTCATTAGTGTGAATCTAGTTCAGAATAAAGTATTGCATTCATTTGATTTGTTTAAGGTAATTTGCTTCTGGAATTTGCCTGATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

178

Amino Acids

18.69

Weight (kDa)

8.52

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	32 - 116	3.5e-17	Probable lipid transfer
Tryp_alpha_amyl	PF00234	38 - 116	2.4e-13	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13820 AT2G13820 AT2G13820 AT5G64080 AT5G64080
fragaria_vesca	FvH4_5g30920
malus_domestica	MD03G1018400.v1.1 MD07G1177100.v1.1 MD08G1015200.v1.1 MD08G1015300.v1.1 MD08G1021700.v1.1 MD08G1221100.v1.1 MD09G1273500.v1.1 MD10G1180600.v1.1 MD15G1411800.v1.1
prunus_persica	Prupe.1G558100_v2.0.a1
pyrus_communis	pycom08g19180 pycom15g36660
rosa_chinensis	RchiOBHm_Chr7g0226231
rosa_laevigata	RLG00000001757
rosa_multiflora	Rmu_sc0001350.1_g000003 Rmu_sc0013267.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233110
rosa_rugosa	Rorug01G0471300 Rorug02G0477300 Rorug07G0235700
rosa_samantha	Rh7AG382700 Rh7BG369900 Rh7CG402200 Rh7DG381100
rosa_wichuraiana	Rw7G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 89
AccII	CGCG	1 cut(s)	87
AciI	CCGC	8 cut(s)	75, 87, 137, 231, 309, 312, 327, 336
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	2 cut(s)	61, 67
AcsI	RAATTY	1 cut(s)	520
AcyI	GRCGYC	2 cut(s)	90, 228
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	253, 283
AhdI	GACNNNNNGTC	2 cut(s)	115, 145
AhlI	ACTAGT	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw21I	GWGCWC	2 cut(s)	219, 376
Alw26I	GTCTC	3 cut(s)	160, 242, 328
AlwI	GGATC	1 cut(s)	118
AoxI	GGCC	5 cut(s)	61, 67, 171, 246, 294
ApeKI	GCWGC	3 cut(s)	165, 195, 258
ApoI	RAATTY	1 cut(s)	520
AspLEI	GCGC	2 cut(s)	92, 263
BanI	GGYRCC	2 cut(s)	4, 89
Bbv12I	GWGCWC	2 cut(s)	219, 376
BbvI	GCAGC	3 cut(s)	177, 182, 270
BceAI	ACGGC	4 cut(s)	32, 82, 89, 178
BciT130I	CCWGG	1 cut(s)	378
BcoDI	GTCTC	3 cut(s)	160, 242, 328
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	3 cut(s)	12, 399, 464
BfmI	CTRYAG	1 cut(s)	533
BfoI	RGCGCY	2 cut(s)	93, 264
BisI	GCNGC	6 cut(s)	88, 166, 196, 231, 259, 312
BlsI	GCNGC	6 cut(s)	89, 167, 197, 232, 260, 313
Bme1390I	CCNGG	1 cut(s)	378
BmeRI	GACNNNNNGTC	2 cut(s)	115, 145
BmiI	GGNNCC	2 cut(s)	6, 91
BmrFI	CCNGG	1 cut(s)	378
BmrI	ACTGGG	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	191
BsaHI	GRCGYC	2 cut(s)	90, 228
BsaJI	CCNNGG	2 cut(s)	64, 105
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 62, 86, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	205, 265
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	64, 105
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseNI	ACTGG	2 cut(s)	205, 265
BseRI	GAGGAG	2 cut(s)	29, 70
BseXI	GCAGC	3 cut(s)	177, 182, 270
BsgI	GTGCAG	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	5 cut(s)	63, 69, 173, 248, 296
BshNI	GGYRCC	2 cut(s)	4, 89
BsiHKAI	GWGCWC	2 cut(s)	219, 376
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	3 cut(s)	160, 242, 328
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	5 cut(s)	63, 69, 173, 248, 296
Bsp1286I	GDGCHC	2 cut(s)	219, 376
Bsp143I	GATC	2 cut(s)	123, 529
BspACI	CCGC	8 cut(s)	75, 87, 137, 231, 309, 312, 327, 336
BspANI	GGCC	5 cut(s)	63, 69, 173, 248, 296
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	6, 91
BspPI	GGATC	1 cut(s)	118
BspT107I	GGYRCC	2 cut(s)	4, 89
BsrI	ACTGG	2 cut(s)	205, 265
BssECI	CCNNGG	2 cut(s)	64, 105
BssMI	GATC	2 cut(s)	123, 529
BssNI	GRCGYC	2 cut(s)	90, 228
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	214, 347
BstACI	GRCGYC	2 cut(s)	90, 228
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	291, 413
BstDSI	CCRYGG	2 cut(s)	64, 105
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	2 cut(s)	93, 264
BstHHI	GCGC	2 cut(s)	92, 263
BstKTI	GATC	2 cut(s)	126, 532
BstMAI	GTCTC	3 cut(s)	160, 242, 328
BstMBI	GATC	2 cut(s)	123, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 335
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	533
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	3 cut(s)	177, 182, 270
BsuRI	GGCC	5 cut(s)	63, 69, 173, 248, 296
BtgI	CCRYGG	2 cut(s)	64, 105
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	316
CfoI	GCGC	2 cut(s)	92, 263
CseI	GACGC	1 cut(s)	236
CviAII	CATG	2 cut(s)	133, 298
CviJI	RGCY	8 cut(s)	57, 63, 69, 173, 181, 224, 248, 296
CviKI_1	RGCY	8 cut(s)	57, 63, 69, 173, 181, 224, 248, 296
DdeI	CTNAG	2 cut(s)	291, 413
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	2 cut(s)	125, 531
DpnII	GATC	2 cut(s)	123, 529
DriI	GACNNNNNGTC	2 cut(s)	115, 145
EaeI	YGGCCR	2 cut(s)	61, 67
Eam1105I	GACNNNNNGTC	2 cut(s)	115, 145
EciI	GGCGGA	4 cut(s)	64, 152, 316, 325
Eco147I	AGGCCT	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	376
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaeI	CATG	2 cut(s)	136, 301
FaiI	YATR	3 cut(s)	134, 299, 383
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	2 cut(s)	132, 297
FauI	CCCGC	1 cut(s)	316
Fnu4HI	GCNGC	6 cut(s)	88, 166, 196, 231, 259, 312
Fsp4HI	GCNGC	6 cut(s)	88, 166, 196, 231, 259, 312
FspBI	CTAG	3 cut(s)	12, 399, 464
GlaI	GCGC	2 cut(s)	91, 262
GluI	GCNGC	6 cut(s)	88, 166, 196, 231, 259, 312
HaeII	RGCGCY	2 cut(s)	93, 264
HaeIII	GGCC	5 cut(s)	63, 69, 173, 248, 296
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	2 cut(s)	92, 263
Hin1I	GRCGYC	2 cut(s)	90, 228
Hin1II	CATG	2 cut(s)	136, 301
Hin6I	GCGC	2 cut(s)	90, 261
HinP1I	GCGC	2 cut(s)	90, 261
HinfI	GANTC	3 cut(s)	15, 204, 460
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	471
Hpy188III	TCNNGA	6 cut(s)	12, 127, 208, 253, 280, 517
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	2 cut(s)	47, 121
HpyAV	CCTTC	3 cut(s)	18, 179, 259
HpyCH4III	ACNGT	2 cut(s)	214, 347
HpyCH4V	TGCA	3 cut(s)	198, 318, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 335
HpyF3I	CTNAG	2 cut(s)	291, 413
Hsp92I	GRCGYC	2 cut(s)	90, 228
Hsp92II	CATG	2 cut(s)	136, 301
HspAI	GCGC	2 cut(s)	90, 261
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	123, 529
LmnI	GCTCC	3 cut(s)	42, 103, 379
Lsp1109I	GCAGC	3 cut(s)	177, 182, 270
MaeI	CTAG	3 cut(s)	12, 399, 464
MalI	GATC	2 cut(s)	125, 531
MboI	GATC	2 cut(s)	123, 529
MboII	GAAGA	2 cut(s)	379, 382
MhlI	GDGCHC	2 cut(s)	219, 376
MluCI	AATT	3 cut(s)	404, 507, 520
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	2 cut(s)	9, 198
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	7 cut(s)	38, 50, 88, 91, 238, 314, 343
MseI	TTAA	2 cut(s)	395, 501
MslI	CAYNNNNRTG	1 cut(s)	455
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	230, 335
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	2 cut(s)	123, 529
NlaIII	CATG	2 cut(s)	136, 301
NlaIV	GGNNCC	2 cut(s)	6, 91
NmeAIII	GCCGAG	1 cut(s)	199
PceI	AGGCCT	1 cut(s)	248
PctI	GAATGC	1 cut(s)	484
PfeI	GAWTC	1 cut(s)	460
PkrI	GCNGC	6 cut(s)	89, 167, 197, 232, 260, 313
PleI	GAGTC	2 cut(s)	9, 198
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	2 cut(s)	9, 198
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	6, 91
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	395, 501
SatI	GCNGC	6 cut(s)	88, 166, 196, 231, 259, 312
Sau3AI	GATC	2 cut(s)	123, 529
SchI	GAGTC	2 cut(s)	9, 198
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	2 cut(s)	219, 376
SetI	ASST	3 cut(s)	10, 226, 507
SfcI	CTRYAG	1 cut(s)	533
SfoI	GGCGCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	3 cut(s)	404, 507, 520
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	8 cut(s)	75, 87, 137, 231, 309, 312, 327, 336
SspDI	GGCGCC	1 cut(s)	89
SspMI	CTAG	3 cut(s)	12, 399, 464
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	214, 347
TasI	AATT	3 cut(s)	404, 507, 520
TauI	GCSGC	3 cut(s)	90, 233, 314
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	2 cut(s)	395, 501
Tru9I	TTAA	2 cut(s)	395, 501
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	3 cut(s)	165, 195, 258
TspDTI	ATGAA	2 cut(s)	439, 477
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	520
XbaI	TCTAGA	1 cut(s)	11
XspI	CTAG	3 cut(s)	12, 399, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.