Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004813

Physical Location & Seq

Genomic Coordinates Forward (+)

19210605 .. 19213316

Gene Structure 2712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g19180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGAGGAGCAGGGAGGGTTTGGATCAGTACTGTGGTGGTGGTGGTGATGGCGGTGCTAGGGTGTGGACTCGGGGACCCTGCGTCGCCGTCGCAGCACACGGCGCCTGCCCCGTCGGTGGACTGCATTAGCCTGATCTCGACCATGGCCGACTGCTTGCCGTTTGTGTCGAACGGGAGCACCGACACGAAGCCAGCAGAGACTTGCTGCAATGGCCTCAAGACCGTGCTCGAAGCCGACGCTTCCTGTCTCTGTGTGGCCTTCAAGAGCAGTGCTCAACTCGGCGTCGTTTTAAACGTCACCAAGGCCACCTCCCTCCCCGCCGCTTGCCAAGTCTCCGCTCCTTCCGTCGCCGACTGTGGATTATCTGTCACTCCTGCTGGCGCCCCTGGTGGTGGCGCTGGTGCACCAGAGTCGTCTGCTGGAGGGAATGAGCAAACAACACCTCCGGGAAGCTCAGGTTCTTTTATGCTCGCCAGTTCGGTTGGATCCCTGCTTGTTGGTCTTGTAATTGCATCATTCCCTTGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

178

Amino Acids

17.11

Weight (kDa)

4.41

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	36 - 120	1.2e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	42 - 120	1.2e-11	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13820 AT2G13820 AT2G13820 AT5G64080 AT5G64080
fragaria_vesca	FvH4_5g30920
malus_domestica	MD03G1018400.v1.1 MD07G1177100.v1.1 MD08G1015200.v1.1 MD08G1015300.v1.1 MD08G1021700.v1.1 MD08G1221100.v1.1 MD09G1273500.v1.1 MD10G1180600.v1.1 MD15G1411800.v1.1
prunus_persica	Prupe.1G558100_v2.0.a1
pyrus_communis	pycom08g19180 pycom15g36660
rosa_chinensis	RchiOBHm_Chr7g0226231
rosa_laevigata	RLG00000001757
rosa_multiflora	Rmu_sc0001350.1_g000003 Rmu_sc0013267.1_g000005
rosa_roxburghii	Rroxscaffold_3G00233110
rosa_rugosa	Rorug01G0471300 Rorug02G0477300 Rorug07G0235700
rosa_samantha	Rh7AG382700 Rh7BG369900 Rh7CG402200 Rh7DG381100
rosa_wichuraiana	Rw7G032070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	103, 383
AccBSI	CCGCTC	1 cut(s)	341
AciI	CCGC	4 cut(s)	53, 321, 324, 339
AclWI	GGATC	3 cut(s)	32, 483, 496
AcoI	YGGCCR	1 cut(s)	147
AcyI	GRCGYC	3 cut(s)	104, 285, 384
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	2 cut(s)	118, 395
AgsI	TTSAA	1 cut(s)	265
AhdI	GACNNNNNGTC	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	1 cut(s)	456
AluI	AGCT	1 cut(s)	456
Alw21I	GWGCWC	4 cut(s)	182, 231, 277, 409
Alw26I	GTCTC	3 cut(s)	194, 254, 340
Alw44I	GTGCAC	1 cut(s)	405
AlwI	GGATC	3 cut(s)	32, 483, 496
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	4 cut(s)	147, 214, 258, 306
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	2 cut(s)	94, 207
AspLEI	GCGC	3 cut(s)	106, 386, 401
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	450
AsuHPI	GGTGA	2 cut(s)	58, 292
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	409
BamHI	GGATCC	1 cut(s)	488
BanI	GGYRCC	2 cut(s)	103, 383
Bbv12I	GWGCWC	4 cut(s)	182, 231, 277, 409
BbvI	GCAGC	2 cut(s)	106, 194
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	3 cut(s)	73, 117, 145
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BciT130I	CCWGG	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	450
BcoDI	GTCTC	3 cut(s)	194, 254, 340
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	3 cut(s)	107, 387, 402
BisI	GCNGC	3 cut(s)	95, 208, 324
BlsI	GCNGC	3 cut(s)	96, 209, 325
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	390, 450
Bme18I	GGWCC	1 cut(s)	76
BmeRI	GACNNNNNGTC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	5 cut(s)	77, 78, 105, 385, 490
BmrFI	CCNGG	2 cut(s)	390, 450
BmsI	GCATC	1 cut(s)	524
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpmI	CTGGAG	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	457
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	450
BsaHI	GRCGYC	3 cut(s)	104, 285, 384
BsaJI	CCNNGG	3 cut(s)	144, 303, 388
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 395
Bse1I	ACTGG	1 cut(s)	477
Bse3DI	GCAATG	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	3 cut(s)	144, 303, 388
BseLI	CCNNNNNNNGG	2 cut(s)	118, 395
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	477
BseRI	GAGGAG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	2 cut(s)	106, 194
BshFI	GGCC	4 cut(s)	149, 216, 260, 308
BshNI	GGYRCC	2 cut(s)	103, 383
BsiHKAI	GWGCWC	4 cut(s)	182, 231, 277, 409
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	118, 395
BsmAI	GTCTC	3 cut(s)	194, 254, 340
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	4 cut(s)	149, 216, 260, 308
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	4 cut(s)	182, 231, 277, 409
Bsp143I	GATC	3 cut(s)	24, 135, 488
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	4 cut(s)	53, 321, 324, 339
BspANI	GGCC	4 cut(s)	149, 216, 260, 308
BspCNI	CTCAG	1 cut(s)	470
BspLI	GGNNCC	5 cut(s)	77, 78, 105, 385, 490
BspPI	GGATC	3 cut(s)	32, 483, 496
BspT107I	GGYRCC	2 cut(s)	103, 383
BsrBI	CCGCTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	3 cut(s)	144, 303, 388
BssMI	GATC	3 cut(s)	24, 135, 488
BssNI	GRCGYC	3 cut(s)	104, 285, 384
BssT1I	CCWWGG	2 cut(s)	144, 303
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	3 cut(s)	34, 226, 359
BstACI	GRCGYC	3 cut(s)	104, 285, 384
BstC8I	GCNNGC	6 cut(s)	108, 158, 195, 328, 382, 474
BstDEI	CTNAG	1 cut(s)	457
BstDSI	CCRYGG	1 cut(s)	144
BstH2I	RGCGCY	3 cut(s)	107, 387, 402
BstHHI	GCGC	3 cut(s)	106, 386, 401
BstKTI	GATC	3 cut(s)	27, 138, 491
BstMAI	GTCTC	3 cut(s)	194, 254, 340
BstMBI	GATC	3 cut(s)	24, 135, 488
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 103, 213
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	2 cut(s)	388, 448
BstSLI	GKGCMC	1 cut(s)	409
BstV1I	GCAGC	2 cut(s)	106, 194
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BsuRI	GGCC	4 cut(s)	149, 216, 260, 308
BtgI	CCRYGG	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	6 cut(s)	108, 158, 195, 328, 382, 474
CfoI	GCGC	3 cut(s)	106, 386, 401
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	3 cut(s)	72, 248, 274
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	8 cut(s)	132, 149, 193, 216, 236, 260, 308, 456
CviKI_1	RGCY	8 cut(s)	132, 149, 193, 216, 236, 260, 308, 456
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	1 cut(s)	457
DinI	GGCGCC	2 cut(s)	105, 385
DpnI	GATC	3 cut(s)	26, 137, 490
DpnII	GATC	3 cut(s)	24, 135, 488
DraI	TTTAAA	1 cut(s)	294
DriI	GACNNNNNGTC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	147
Eam1105I	GACNNNNNGTC	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	144, 303
Eco47I	GGWCC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	144, 303
EgeI	GGCGCC	2 cut(s)	105, 385
EheI	GGCGCC	2 cut(s)	105, 385
ErhI	CCWWGG	2 cut(s)	144, 303
FaeI	CATG	1 cut(s)	148
FaiI	YATR	2 cut(s)	146, 470
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	144
FauI	CCCGC	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	95, 208, 324
Fsp4HI	GCNGC	3 cut(s)	95, 208, 324
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	3 cut(s)	105, 385, 400
GluI	GCNGC	3 cut(s)	95, 208, 324
GsuI	CTGGAG	1 cut(s)	444
HaeII	RGCGCY	3 cut(s)	107, 387, 402
HaeIII	GGCC	4 cut(s)	149, 216, 260, 308
HapII	CCGG	1 cut(s)	449
HgaI	GACGC	3 cut(s)	72, 248, 274
HhaI	GCGC	3 cut(s)	106, 386, 401
Hin1I	GRCGYC	3 cut(s)	104, 285, 384
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	3 cut(s)	104, 384, 399
HinP1I	GCGC	3 cut(s)	104, 384, 399
HinfI	GANTC	2 cut(s)	69, 413
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	2 cut(s)	58, 292
Hpy166II	GTNNAC	3 cut(s)	68, 121, 407
Hpy188III	TCNNGA	3 cut(s)	139, 220, 265
Hpy8I	GTNNAC	3 cut(s)	68, 121, 407
Hpy99I	CGWCG	6 cut(s)	88, 94, 118, 242, 290, 353
HpyAV	CCTTC	2 cut(s)	271, 354
HpyCH4III	ACNGT	3 cut(s)	34, 226, 359
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	4 cut(s)	126, 210, 407, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 103, 213
HpyF3I	CTNAG	1 cut(s)	457
HpySE526I	ACGT	1 cut(s)	297
Hsp92I	GRCGYC	3 cut(s)	104, 285, 384
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	3 cut(s)	104, 384, 399
KasI	GGCGCC	2 cut(s)	103, 383
KflI	GGGWCCC	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	24, 135, 488
LmnI	GCTCC	3 cut(s)	8, 177, 346
Lsp1109I	GCAGC	2 cut(s)	106, 194
LweI	GCATC	1 cut(s)	524
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	298, 370
MalI	GATC	3 cut(s)	26, 137, 490
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	3 cut(s)	24, 135, 488
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	4 cut(s)	182, 231, 277, 409
MluCI	AATT	1 cut(s)	510
Mly113I	GGCGCC	2 cut(s)	104, 384
MlyI	GAGTC	2 cut(s)	63, 422
MmeI	TCCRAC	1 cut(s)	466
MnlI	CCTC	6 cut(s)	9, 227, 322, 326, 419, 456
MseI	TTAA	1 cut(s)	293
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	390, 450
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	3 cut(s)	94, 103, 213
NarI	GGCGCC	2 cut(s)	104, 384
NciI	CCSGG	1 cut(s)	450
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	24, 135, 488
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	5 cut(s)	77, 78, 105, 385, 490
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	2 cut(s)	298, 370
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 294
PfoI	TCCNGGA	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	96, 209, 325
PleI	GAGTC	2 cut(s)	63, 421
PluTI	GGCGCC	2 cut(s)	107, 387
PpsI	GAGTC	2 cut(s)	63, 421
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	5 cut(s)	77, 78, 105, 385, 490
PspPI	GGNCC	1 cut(s)	76
PspPPI	RGGWCCY	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	488
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	3 cut(s)	95, 208, 324
Sau3AI	GATC	3 cut(s)	24, 135, 488
Sau96I	GGNCC	1 cut(s)	76
ScaI	AGTACT	1 cut(s)	31
SchI	GAGTC	2 cut(s)	63, 422
ScrFI	CCNGG	2 cut(s)	390, 450
SduI	GDGCHC	4 cut(s)	182, 231, 277, 409
SetI	ASST	5 cut(s)	300, 314, 448, 458, 463
SfaNI	GCATC	1 cut(s)	524
SfoI	GGCGCC	2 cut(s)	105, 385
SinI	GGWCC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	510
SsiI	CCGC	4 cut(s)	53, 321, 324, 339
SspDI	GGCGCC	2 cut(s)	103, 383
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	388, 448
StyI	CCWWGG	2 cut(s)	144, 303
TaaI	ACNGT	3 cut(s)	34, 226, 359
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	3 cut(s)	140, 170, 231
TasI	AATT	1 cut(s)	510
TatI	WGTACW	1 cut(s)	29
TauI	GCSGC	1 cut(s)	326
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	2 cut(s)	298, 370
TseI	GCWGC	2 cut(s)	94, 207
Tsp45I	GTSAC	2 cut(s)	298, 370
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	1 cut(s)	277
VneI	GTGCAC	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	76
XspI	CTAG	1 cut(s)	59
ZrmI	AGTACT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.