Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007672

Physical Location & Seq

Genomic Coordinates Reverse (-)

6393310 .. 6395000

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G14880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCGGTTTCTTCTGGAACATTCTCCACTTTCCTCTGCATCAAAACGACATCTTTCCGCAACCCATCAACTCCTCTGTCCTCTCTCCGGTTCGCCTCTCACCCGGCGGCTAAACTACGCTTGGTTCGAGCGGTAACATCTGCGACGGAATCTTCAGAGCCAACCGCAACCAATAAGAGAGTGCCACGCGGTATCATGAAACCTAGACCAGTTTCACCAGAGATGCAAGACATCGTCGAACTTCCTGAAATCGCTCGCACACAAGCTCTTAAGCGTATTTGGGCTTACATCAAAGAACATGACCTTCAGGACCCACAAAACAAGAGAGAAATACTGTGTGATGAGAAGCTGAAGAAGATATTCGAAGGAAGAGATCGGGTTGGGTTCCTAGAGATTGCAAAGCTCATCGGTCCTCACTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

141

Amino Acids

15.9

Weight (kDa)

9.88

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	67 - 103	4e-10	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14880 AT2G14880 AT2G14880 AT4G34290
fragaria_vesca	FvH4_2g04600
malus_domestica	MD13G1205100.v1.1
prunus_persica	Prupe.8G139100_v2.0.a1
pyrus_communis	pycom05g09340 pycom10g08680
rosa_chinensis	RchiOBHm_Chr6g0254211
rosa_laevigata	RLG00000014934
rosa_multiflora	Rmu_sc0000010.1_g000013 Rmu_sc0003711.1_g000013 Rmu_sc0003711.1_g000014 Rmu_sc0005652.1_g000031
rosa_roxburghii	Rroxscaffold_7G00211060
rosa_rugosa	Rorug05G0089400 Rorug05G0550700 Rorug05G0551000
rosa_samantha	Rh6AG067100 Rh6BG060300 Rh6CG060200 Rh6DG057200
rosa_wichuraiana	Rw6G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	131
AccII	CGCG	1 cut(s)	189
AciI	CCGC	6 cut(s)	5, 58, 107, 131, 165, 189
AcuI	CTGAAG	3 cut(s)	138, 290, 371
AfiI	CCNNNNNNNGG	1 cut(s)	87
AflII	CTTAAG	1 cut(s)	269
AluBI	AGCT	3 cut(s)	266, 349, 403
AluI	AGCT	3 cut(s)	266, 349, 403
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	310, 410
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	92, 207
AsuII	TTCGAA	1 cut(s)	363
AvaII	GGWCC	2 cut(s)	310, 410
BccI	CCATC	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	104
BfaI	CTAG	2 cut(s)	204, 389
BfrI	CTTAAG	1 cut(s)	269
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	2 cut(s)	310, 410
BmgT120I	GGNCC	2 cut(s)	310, 410
BmiI	GGNNCC	2 cut(s)	312, 386
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	48, 213
Bpu14I	TTCGAA	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	104
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	88, 104
BslI	CCNNNNNNNGG	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	6 cut(s)	5, 58, 107, 131, 165, 189
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	312, 386
BspT104I	TTCGAA	1 cut(s)	363
BspTI	CTTAAG	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	209
BssMI	GATC	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	336
Bst6I	CTCTTC	1 cut(s)	364
BstAFI	CTTAAG	1 cut(s)	269
BstBI	TTCGAA	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	256
CciI	TCATGA	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	310, 410
CviAII	CATG	2 cut(s)	196, 299
CviJI	RGCY	6 cut(s)	110, 160, 266, 284, 349, 403
CviKI_1	RGCY	6 cut(s)	110, 160, 266, 284, 349, 403
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
Eco47I	GGWCC	2 cut(s)	310, 410
Eco57I	CTGAAG	3 cut(s)	138, 290, 371
EcoO109I	RGGNCCY	1 cut(s)	310
FaeI	CATG	2 cut(s)	199, 302
FaiI	YATR	2 cut(s)	197, 300
FatI	CATG	2 cut(s)	195, 298
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	204, 389
GluI	GCNGC	1 cut(s)	108
HapII	CCGG	2 cut(s)	88, 104
Hin1II	CATG	2 cut(s)	199, 302
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	2 cut(s)	88, 104
HphI	GGTGA	2 cut(s)	92, 207
Hpy188I	TCNGA	2 cut(s)	157, 425
Hpy188III	TCNNGA	4 cut(s)	15, 196, 245, 308
Hpy99I	CGWCG	2 cut(s)	148, 239
HpyAV	CCTTC	2 cut(s)	314, 359
HpyCH4III	ACNGT	1 cut(s)	336
HpyCH4V	TGCA	3 cut(s)	39, 226, 398
Hsp92II	CATG	2 cut(s)	199, 302
Kzo9I	GATC	1 cut(s)	373
LpnPI	CCDG	6 cut(s)	101, 117, 222, 231, 258, 293
LweI	GCATC	2 cut(s)	48, 213
MaeI	CTAG	2 cut(s)	204, 389
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	375
MbiI	CCGCTC	1 cut(s)	131
MboI	GATC	1 cut(s)	373
MboII	GAAGA	5 cut(s)	3, 144, 364, 367, 381
MnlI	CCTC	5 cut(s)	44, 84, 91, 106, 423
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	1 cut(s)	270
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	2 cut(s)	88, 104
MspR9I	CCNGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	189
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	2 cut(s)	199, 302
NlaIV	GGNNCC	2 cut(s)	312, 386
NspV	TTCGAA	1 cut(s)	363
PagI	TCATGA	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	149
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	312, 386
PspPI	GGNCC	2 cut(s)	310, 410
PspPPI	RGGWCCY	1 cut(s)	310
PsyI	GACNNNGTC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	2 cut(s)	310, 410
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	5 cut(s)	205, 268, 306, 351, 405
SfaNI	GCATC	2 cut(s)	48, 213
SfuI	TTCGAA	1 cut(s)	363
SinI	GGWCC	2 cut(s)	310, 410
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SsiI	CCGC	6 cut(s)	5, 58, 107, 131, 165, 189
SspMI	CTAG	2 cut(s)	204, 389
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	336
TaqI	TCGA	3 cut(s)	127, 237, 363
TaqII	GACCGA	1 cut(s)	398
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	212
TspGWI	ACGGA	1 cut(s)	161
Tth111I	GACNNNGTC	1 cut(s)	233
Vha464I	CTTAAG	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	310, 410
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	2 cut(s)	204, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.