Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003711.1

Orthogroup ID

OG0007672

Physical Location & Seq

Genomic Coordinates Reverse (-)

35986 .. 37155

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003711.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

atgaataaggtgcagcaactctttgttcttcaagatgtggcacttgtgaagtctcttgtactctcagaacgaaatttgaatgatagaagagtgtggcatcttgacccaaaaggccaatttacggtaaaaagtgcttgtaaactcttcttgggactacgacatgcaactaatggtgggggtgcagcagttatttcaaaggtttggaaaggtgtatggcaagcttgttttcctggaaatgctcgaatttgcatatggaaggtgcttcagaacatattgcttacggttgatagattggtgtccaacatagtacaaattgagtcctatttgtgtatgctgtgtgggatggggaatgagtcctttgatcatctgtgtcgtttatgtccttttacgaagattttattggaatcggaggaggagctcaggcgagtttgttatgaggtaactgcaattgatcttactttatttgattggttgaacttttgtttcaagaagctttcaaaacgagggtggtgtaaattattatttttcatatggggtgcttggaaggagatgaatcatagagtttgggaacaggtagaggcccgggaaggtgatgtgtttttcagcttaaatgctaggcttactaacttccagttctataggaagccatttcctagtattgggagggggagttgtaggtggaaacctcctgctcaagtttggttaaaggtgaatatggacgaggctttttcaagctctagttctagtggaggtattggtattgttgttagagatgctattggtacttgtgttgggggtttctatcaggctctggaggatgtttattctgcagaacatgtggaggctcttgctggtagagcagctgtgaattttgtacaagataaaaggttctttccggtagtatttgagacagattatttaactcttactaatgctactaagcaggctgtcattccctatacttccccattgggttgtgtgtatgatgacatcatacaagggttgaatttcattccaggttctatgttcaagcatgcttatcatcaagctaattgtatggctcactgtttagcttcttttgcttctatgtctagatcttttttagtttggaaaaacattcccccaaattttattcttaatgtacttttttctgattgtaatttcgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

389

Amino Acids

44.2

Weight (kDa)

8.72

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14880 AT2G14880 AT2G14880 AT4G34290
fragaria_vesca	FvH4_2g04600
malus_domestica	MD13G1205100.v1.1
prunus_persica	Prupe.8G139100_v2.0.a1
pyrus_communis	pycom05g09340 pycom10g08680
rosa_chinensis	RchiOBHm_Chr6g0254211
rosa_laevigata	RLG00000014934
rosa_multiflora	Rmu_sc0000010.1_g000013 Rmu_sc0003711.1_g000013 Rmu_sc0003711.1_g000014 Rmu_sc0005652.1_g000031
rosa_roxburghii	Rroxscaffold_7G00211060
rosa_rugosa	Rorug05G0089400 Rorug05G0550700 Rorug05G0551000
rosa_samantha	Rh6AG067100 Rh6BG060300 Rh6CG060200 Rh6DG057200
rosa_wichuraiana	Rw6G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	5 cut(s)	73, 243, 868, 1006, 1126
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	5 cut(s)	60, 309, 784, 876, 1143
AfiI	CCNNNNNNNGG	2 cut(s)	121, 659
AflIII	ACRYGT	1 cut(s)	835
AgsI	TTSAA	9 cut(s)	32, 79, 195, 475, 487, 498, 732, 1006, 1030
AjnI	CCWGG	2 cut(s)	229, 1015
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AluBI	AGCT	8 cut(s)	221, 418, 493, 606, 735, 863, 1049, 1073
AluI	AGCT	8 cut(s)	221, 418, 493, 606, 735, 863, 1049, 1073
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	2 cut(s)	57, 902
AlwNI	CAGNNNCTG	1 cut(s)	811
Ama87I	CYCGRG	1 cut(s)	582
AoxI	GGCC	2 cut(s)	112, 579
ApeKI	GCWGC	3 cut(s)	13, 182, 860
ApoI	RAATTY	5 cut(s)	73, 243, 868, 1006, 1126
AspS9I	GGNCC	1 cut(s)	580
AsuC2I	CCSGG	2 cut(s)	583, 584
AsuHPI	GGTGA	2 cut(s)	602, 721
AvaI	CYCGRG	1 cut(s)	582
BaeI	ACNNNNGTAYC	2 cut(s)	774, 807
BanII	GRGCYC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	3 cut(s)	25, 194, 872
BccI	CCATC	1 cut(s)	337
BciT130I	CCWGG	2 cut(s)	231, 1017
BclI	TGATCA	1 cut(s)	361
BcnI	CCSGG	2 cut(s)	583, 584
BcoDI	GTCTC	2 cut(s)	57, 902
BfaI	CTAG	5 cut(s)	615, 654, 738, 744, 1092
BfmI	CTRYAG	2 cut(s)	637, 828
BglII	AGATCT	1 cut(s)	1094
BisI	GCNGC	3 cut(s)	14, 183, 861
BlsI	GCNGC	3 cut(s)	15, 184, 862
Bme1390I	CCNGG	4 cut(s)	231, 583, 584, 1017
BmeT110I	CYCGRG	1 cut(s)	582
BmgT120I	GGNCC	1 cut(s)	580
BmrFI	CCNGG	4 cut(s)	231, 583, 584, 1017
BmsI	GCATC	2 cut(s)	106, 763
BpmI	CTGGAG	1 cut(s)	833
Bpu10I	CCTNAGC	1 cut(s)	419
BpuEI	CTTGAG	1 cut(s)	678
BpuMI	CCSGG	2 cut(s)	583, 584
BsaJI	CCNNGG	1 cut(s)	582
BsaWI	WCCGGW	1 cut(s)	895
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 659
Bse1I	ACTGG	1 cut(s)	631
BseBI	CCWGG	2 cut(s)	231, 1017
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	2 cut(s)	348, 823
BseLI	CCNNNNNNNGG	2 cut(s)	121, 659
BseMII	CTCAG	2 cut(s)	78, 433
BseNI	ACTGG	1 cut(s)	631
BseRI	GAGGAG	2 cut(s)	425, 428
BseXI	GCAGC	3 cut(s)	25, 194, 872
BsgI	GTGCAG	2 cut(s)	32, 201
BshFI	GGCC	2 cut(s)	114, 581
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	582
BsiSI	CCGG	2 cut(s)	583, 896
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	121, 659
BsmAI	GTCTC	2 cut(s)	57, 902
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	2 cut(s)	114, 581
BsoBI	CYCGRG	1 cut(s)	582
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp1407I	TGTACA	1 cut(s)	874
Bsp143I	GATC	3 cut(s)	361, 451, 1094
BspANI	GGCC	2 cut(s)	114, 581
BspCNI	CTCAG	2 cut(s)	77, 432
BspMAI	CTGCAG	1 cut(s)	832
BsrGI	TGTACA	1 cut(s)	874
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	3 cut(s)	361, 451, 1094
Bst2UI	CCWGG	2 cut(s)	231, 1017
Bst4CI	ACNGT	3 cut(s)	124, 283, 1067
Bst6I	CTCTTC	2 cut(s)	82, 149
BstAUI	TGTACA	1 cut(s)	874
BstC8I	GCNNGC	3 cut(s)	219, 945, 1035
BstDEI	CTNAG	3 cut(s)	64, 419, 939
BstF5I	GGATG	2 cut(s)	348, 823
BstKTI	GATC	3 cut(s)	364, 454, 1097
BstMAI	GTCTC	2 cut(s)	57, 902
BstMBI	GATC	3 cut(s)	361, 451, 1094
BstMWI	GCNNNNNNNGC	2 cut(s)	857, 1079
BstNI	CCWGG	2 cut(s)	231, 1017
BstNSI	RCATGY	3 cut(s)	164, 839, 1037
BstSCI	CCNGG	4 cut(s)	229, 581, 582, 1015
BstSFI	CTRYAG	2 cut(s)	637, 828
BstV1I	GCAGC	3 cut(s)	25, 194, 872
BstX2I	RGATCY	1 cut(s)	1094
BstYI	RGATCY	1 cut(s)	1094
BsuRI	GGCC	2 cut(s)	114, 581
BtsCI	GGATG	2 cut(s)	348, 823
BtsIMutI	CAGTG	1 cut(s)	1063
Cac8I	GCNNGC	3 cut(s)	219, 945, 1035
CaiI	CAGNNNCTG	1 cut(s)	811
Cfr13I	GGNCC	1 cut(s)	580
Cfr9I	CCCGGG	1 cut(s)	582
Csp6I	GTAC	5 cut(s)	59, 308, 783, 875, 1142
CviAII	CATG	3 cut(s)	161, 836, 1034
CviQI	GTAC	5 cut(s)	59, 308, 783, 875, 1142
DdeI	CTNAG	3 cut(s)	64, 419, 939
DpnI	GATC	3 cut(s)	363, 453, 1096
DpnII	GATC	3 cut(s)	361, 451, 1094
Eam1104I	CTCTTC	2 cut(s)	82, 149
EarI	CTCTTC	2 cut(s)	82, 149
Ecl136II	GAGCTC	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	420
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	582
EcoICRI	GAGCTC	1 cut(s)	418
EcoRII	CCWGG	2 cut(s)	229, 1015
EcoT38I	GRGCYC	1 cut(s)	420
FaeI	CATG	3 cut(s)	164, 839, 1037
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	3 cut(s)	160, 835, 1033
FauNDI	CATATG	2 cut(s)	251, 530
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	3 cut(s)	14, 183, 861
FokI	GGATG	2 cut(s)	355, 830
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	3 cut(s)	14, 183, 861
FspBI	CTAG	5 cut(s)	615, 654, 738, 744, 1092
GluI	GCNGC	3 cut(s)	14, 183, 861
GsuI	CTGGAG	1 cut(s)	833
HaeIII	GGCC	2 cut(s)	114, 581
HapII	CCGG	2 cut(s)	583, 896
Hin1II	CATG	3 cut(s)	164, 839, 1037
HindIII	AAGCTT	2 cut(s)	219, 491
HinfI	GANTC	4 cut(s)	317, 353, 404, 553
HpaII	CCGG	2 cut(s)	583, 896
HphI	GGTGA	2 cut(s)	602, 721
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	4 cut(s)	67, 267, 409, 1153
Hpy188III	TCNNGA	5 cut(s)	32, 101, 487, 812, 1092
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	3 cut(s)	250, 538, 581
HpyCH4III	ACNGT	3 cut(s)	124, 283, 1067
HpyCH4V	TGCA	6 cut(s)	13, 164, 182, 249, 446, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	857, 1079
HpyF3I	CTNAG	3 cut(s)	64, 419, 939
Hsp92II	CATG	3 cut(s)	164, 839, 1037
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	361, 451, 1094
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	3 cut(s)	25, 194, 872
LweI	GCATC	2 cut(s)	106, 763
MaeI	CTAG	5 cut(s)	615, 654, 738, 744, 1092
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	3 cut(s)	363, 453, 1096
MboI	GATC	3 cut(s)	361, 451, 1094
MboII	GAAGA	4 cut(s)	20, 99, 136, 403
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	1 cut(s)	1094
MhlI	GDGCHC	1 cut(s)	420
MlyI	GAGTC	2 cut(s)	326, 362
MmeI	TCCRAC	1 cut(s)	324
MseI	TTAA	4 cut(s)	608, 704, 920, 1137
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	2 cut(s)	583, 896
MspR9I	CCNGG	4 cut(s)	231, 583, 584, 1017
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	2 cut(s)	231, 1017
MwoI	GCNNNNNNNGC	2 cut(s)	857, 1079
NciI	CCSGG	2 cut(s)	583, 584
NdeI	CATATG	2 cut(s)	251, 530
NdeII	GATC	3 cut(s)	361, 451, 1094
NlaIII	CATG	3 cut(s)	164, 839, 1037
NspI	RCATGY	3 cut(s)	164, 839, 1037
PaeI	GCATGC	1 cut(s)	1037
PciI	ACATGT	1 cut(s)	835
PfeI	GAWTC	2 cut(s)	404, 553
PfoI	TCCNGGA	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	15, 184, 862
PleI	GAGTC	2 cut(s)	325, 361
PpsI	GAGTC	2 cut(s)	325, 361
PscI	ACATGT	1 cut(s)	835
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	2 cut(s)	229, 1015
PspGI	CCWGG	2 cut(s)	229, 1015
PspPI	GGNCC	1 cut(s)	580
PstI	CTGCAG	1 cut(s)	832
PstNI	CAGNNNCTG	1 cut(s)	811
PsuI	RGATCY	1 cut(s)	1094
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	5 cut(s)	60, 309, 784, 876, 1143
RsaNI	GTAC	5 cut(s)	59, 308, 783, 875, 1142
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	4 cut(s)	608, 704, 920, 1137
SatI	GCNGC	3 cut(s)	14, 183, 861
Sau3AI	GATC	3 cut(s)	361, 451, 1094
Sau96I	GGNCC	1 cut(s)	580
SchI	GAGTC	2 cut(s)	326, 362
ScrFI	CCNGG	4 cut(s)	231, 583, 584, 1017
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	2 cut(s)	106, 763
SfcI	CTRYAG	2 cut(s)	637, 828
SmaI	CCCGGG	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	693
SmoI	CTYRAG	1 cut(s)	693
SphI	GCATGC	1 cut(s)	1037
SspMI	CTAG	5 cut(s)	615, 654, 738, 744, 1092
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	4 cut(s)	229, 581, 582, 1015
TaaI	ACNGT	3 cut(s)	124, 283, 1067
TaqI	TCGA	1 cut(s)	241
TatI	WGTACW	4 cut(s)	58, 307, 874, 1141
TfiI	GAWTC	2 cut(s)	404, 553
Tru1I	TTAA	4 cut(s)	608, 704, 920, 1137
Tru9I	TTAA	4 cut(s)	608, 704, 920, 1137
TscAI	CASTG	1 cut(s)	1070
TseI	GCWGC	3 cut(s)	13, 182, 860
TspDTI	ATGAA	4 cut(s)	17, 517, 566, 1000
TspMI	CCCGGG	1 cut(s)	582
TspRI	CASTG	1 cut(s)	1070
XapI	RAATTY	5 cut(s)	73, 243, 868, 1006, 1126
XbaI	TCTAGA	1 cut(s)	1091
XceI	RCATGY	3 cut(s)	164, 839, 1037
XmaI	CCCGGG	1 cut(s)	582
XspI	CTAG	5 cut(s)	615, 654, 738, 744, 1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.