Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007672

Physical Location & Seq

Genomic Coordinates Forward (+)

18559808 .. 18559960

Gene Structure 153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1205100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGTGCGCATCCCAACCCTCGCCACTGCCTCGAAGCCGGCCACCACCCCCTTCCGCGAGCCCCGCAGAATCATGAAGCCTCGCAAAGTATCGCCTAAGATGCAAGCCCTTATGGGTGCCCCCAAGATTTCTCGCACCCAGGATCTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

51

Amino Acids

5.63

Weight (kDa)

12.0

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14880 AT2G14880 AT2G14880 AT4G34290
fragaria_vesca	FvH4_2g04600
malus_domestica	MD13G1205100.v1.1
prunus_persica	Prupe.8G139100_v2.0.a1
pyrus_communis	pycom05g09340 pycom10g08680
rosa_chinensis	RchiOBHm_Chr6g0254211
rosa_laevigata	RLG00000014934
rosa_multiflora	Rmu_sc0000010.1_g000013 Rmu_sc0003711.1_g000013 Rmu_sc0003711.1_g000014 Rmu_sc0005652.1_g000031
rosa_roxburghii	Rroxscaffold_7G00211060
rosa_rugosa	Rorug05G0089400 Rorug05G0550700 Rorug05G0551000
rosa_samantha	Rh6AG067100 Rh6BG060300 Rh6CG060200 Rh6DG057200
rosa_wichuraiana	Rw6G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	116
AccII	CGCG	1 cut(s)	57
AciI	CCGC	2 cut(s)	55, 64
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	39
AjnI	CCWGG	1 cut(s)	138
AlwI	GGATC	1 cut(s)	150
AlwNI	CAGNNNCTG	1 cut(s)	145
AoxI	GGCC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	18, 90
BsaJI	CCNNGG	1 cut(s)	138
Bse118I	RCCGGY	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	38
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	63, 121
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	2 cut(s)	55, 64
BspANI	GGCC	1 cut(s)	41
BspFNI	CGCG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	140
BstC8I	GCNNGC	3 cut(s)	39, 59, 105
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	9
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 100
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	121
BstUI	CGCG	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	9
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	3 cut(s)	39, 59, 105
CaiI	CAGNNNCTG	1 cut(s)	145
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	37
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	5 cut(s)	37, 41, 61, 79, 107
CviKI_1	RGCY	5 cut(s)	37, 41, 61, 79, 107
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	63
FaeI	CATG	1 cut(s)	76
FaiI	YATR	2 cut(s)	74, 113
FatI	CATG	1 cut(s)	72
FauI	CCCGC	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	63
FspAI	RTGCGCAY	1 cut(s)	8
FspI	TGCGCA	1 cut(s)	8
GlaI	GCGC	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	38
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	61
HpyCH4V	TGCA	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 100
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	1 cut(s)	7
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	142
LpnPI	CCDG	2 cut(s)	51, 125
LweI	GCATC	2 cut(s)	18, 90
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	2 cut(s)	63, 121
MnlI	CCTC	3 cut(s)	29, 40, 90
MroNI	GCCGGC	1 cut(s)	37
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	63, 100
NaeI	GCCGGC	1 cut(s)	39
NdeII	GATC	1 cut(s)	142
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	118
NsbI	TGCGCA	1 cut(s)	8
PagI	TCATGA	1 cut(s)	72
PdiI	GCCGGC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	142
Sau3AI	GATC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	63, 121
SfaNI	GCATC	2 cut(s)	18, 90
SsiI	CCGC	2 cut(s)	55, 64
StyD4I	CCNGG	1 cut(s)	138
TaqI	TCGA	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	69
TscAI	CASTG	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.