Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007672

Physical Location & Seq

Genomic Coordinates Forward (+)

15815628 .. 15818370

Gene Structure 2743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G139100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCAGCAACAACAGGCCTCATCTCCTCCACCTTCCTCTCCGGCGAGACATCGTCGTTTCCCAACACATCTTTCTCCTCCTCATCCTCCTCTCTAAGGTTTCCCCACCCTAACTTCCCCGCTAACCTGCGCATGGTGCGTATCCCAACCCTCGCCACTGCCTCGAAGCCAGCCACCACCCCCCGCCAGCCCCGCGGCATCATGAAGCCTCGCAAAGTCTCGCCCGAGATGCAAGCCCTTGTGGGTACCCCTGAAATTTCTCGCACCCAAGCTCTGAAACTGATTTGGGCTCACATTAAGCAAAATAATCTTCAGGACCCTCAAAACAAGAGGATTATAGTTTGTGATGAGAAGCTGAAGAAGATTTTTGCAGGGAAGGACCAAGTTGGATTTCTGGAGGTTGCTGGGTTGATCACTCCTCATTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

144

Amino Acids

15.69

Weight (kDa)

10.54

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14880 AT2G14880 AT2G14880 AT4G34290
fragaria_vesca	FvH4_2g04600
malus_domestica	MD13G1205100.v1.1
prunus_persica	Prupe.8G139100_v2.0.a1
pyrus_communis	pycom05g09340 pycom10g08680
rosa_chinensis	RchiOBHm_Chr6g0254211
rosa_laevigata	RLG00000014934
rosa_multiflora	Rmu_sc0000010.1_g000013 Rmu_sc0003711.1_g000013 Rmu_sc0003711.1_g000014 Rmu_sc0005652.1_g000031
rosa_roxburghii	Rroxscaffold_7G00211060
rosa_rugosa	Rorug05G0089400 Rorug05G0550700 Rorug05G0551000
rosa_samantha	Rh6AG067100 Rh6BG060300 Rh6CG060200 Rh6DG057200
rosa_wichuraiana	Rw6G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	135
Acc65I	GGTACC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	1 cut(s)	195
AciI	CCGC	4 cut(s)	120, 184, 193, 195
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	2 cut(s)	296, 377
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	96, 133
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 375, 407
AluBI	AGCT	2 cut(s)	272, 355
AluI	AGCT	2 cut(s)	272, 355
Alw26I	GTCTC	2 cut(s)	41, 223
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	255
Asp718I	GGTACC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	2 cut(s)	316, 379
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	2 cut(s)	316, 379
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	152
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	41, 223
BfuAI	ACCTGC	1 cut(s)	135
BfuI	GTATCC	1 cut(s)	152
BisI	GCNGC	2 cut(s)	6, 196
BlsI	GCNGC	2 cut(s)	7, 197
Bme18I	GGWCC	2 cut(s)	316, 379
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	316, 379
BmiI	GGNNCC	2 cut(s)	247, 318
BmsI	GCATC	2 cut(s)	207, 219
BpmI	CTGGAG	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 133
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	96, 133
BseRI	GAGGAG	5 cut(s)	16, 67, 70, 79, 408
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	2 cut(s)	96, 133
BsmAI	GTCTC	2 cut(s)	41, 223
BsnI	GGCC	1 cut(s)	18
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	4 cut(s)	120, 184, 193, 195
BspANI	GGCC	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	247, 318
BspMI	ACCTGC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	411
BstC8I	GCNNGC	3 cut(s)	171, 188, 234
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	193
BstENI	CCTNNNNNAGG	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	83
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	2 cut(s)	41, 223
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 192, 229
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	17
BsuI	GTATCC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	135
Cac8I	GCNNGC	3 cut(s)	171, 188, 234
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	316, 379
Cfr42I	CCGCGG	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	2 cut(s)	133, 202
CviJI	RGCY	9 cut(s)	18, 169, 173, 190, 208, 236, 272, 290, 355
CviKI_1	RGCY	9 cut(s)	18, 169, 173, 190, 208, 236, 272, 290, 355
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	292
Eco47I	GGWCC	2 cut(s)	316, 379
Eco57I	CTGAAG	2 cut(s)	296, 377
Eco88I	CYCGRG	1 cut(s)	224
EcoNI	CCTNNNNNAGG	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	2 cut(s)	136, 205
FaiI	YATR	3 cut(s)	134, 203, 338
FatI	CATG	2 cut(s)	132, 201
FauI	CCCGC	3 cut(s)	127, 191, 200
FbaI	TGATCA	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	6, 196
FokI	GGATG	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	2 cut(s)	6, 196
FspI	TGCGCA	1 cut(s)	131
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	2 cut(s)	6, 196
GsaI	CCCAGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	136, 205
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	42
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	3 cut(s)	202, 314, 395
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	43, 370
HpyCH4V	TGCA	2 cut(s)	232, 371
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 192, 229
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	136, 205
HspAI	GCGC	1 cut(s)	130
KpnI	GGTACC	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	411
KspI	CCGCGG	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	411
LpnPI	CCDG	9 cut(s)	55, 140, 183, 200, 264, 299, 357, 380, 390
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	207, 219
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	3 cut(s)	302, 370, 373
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	367
MseI	TTAA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	1 cut(s)	42
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	136, 192, 229
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	2 cut(s)	136, 205
NlaIV	GGNNCC	2 cut(s)	247, 318
NsbI	TGCGCA	1 cut(s)	131
PagI	TCATGA	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	18
PflFI	GACNNNGTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	7, 197
PpuMI	RGGWCCY	1 cut(s)	316
Psp5II	RGGWCCY	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	404
PspN4I	GGNNCC	2 cut(s)	247, 318
PspPI	GGNCC	2 cut(s)	316, 379
PspPPI	RGGWCCY	1 cut(s)	316
PsyI	GACNNNGTC	1 cut(s)	52
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SacII	CCGCGG	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	6, 196
Sau3AI	GATC	1 cut(s)	411
Sau96I	GGNCC	2 cut(s)	316, 379
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	6 cut(s)	35, 101, 129, 274, 357, 402
SfaNI	GCATC	2 cut(s)	207, 219
Sfr303I	CCGCGG	1 cut(s)	196
SgrBI	CCGCGG	1 cut(s)	196
SinI	GGWCC	2 cut(s)	316, 379
Sse9I	AATT	1 cut(s)	255
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	4 cut(s)	120, 184, 193, 195
StuI	AGGCCT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	164
TasI	AATT	1 cut(s)	255
TauI	GCSGC	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	163
Tth111I	GACNNNGTC	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	316, 379
XagI	CCTNNNNNAGG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.