Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007672

Physical Location & Seq

Genomic Coordinates Forward (+)

12511519 .. 12513676

Gene Structure 2158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCGGCAACCACAGGCCTCATCTCCTCCAGGACATCCACCTTCCTCTCCGGCGAAACGTCGTCGTTTATCAGCCCTCCTTTCTCCTCCCCATCCTCCTCCCTCAGGTTCGCCCCCGCTAACCTGCGCATGGTGCGTATCCCAACCCTCGCCACTGCCTCGAAGCCGGCCACCACCACCCCCCGCGAGCCCCGCGGCATCATGAAGCCTCGCAAAGTATCGCCTGAGATGCAAGCCCTTGTGGGTGCCCCCGAGATTTCTCGCACCCAGGCTCTGAAGCAGATTTGGGCCCACATTAAGCAGAACAATCTTCAGGACCCCCAAAACAAGAAGATCATAGTCTGTGATGAGAAGCTGAAGAACGATCTTTGCAGGGAAGGACCGTGTTGGATTTCTCGAGGTTGCTGGATTGATCACCCCCCATTTCCTTTGAATGACCCTTGTGTAGGAAGAAAGACTTTGGAACTTCGGATCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

160

Amino Acids

17.58

Weight (kDa)

9.91

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	69 - 121	3.5e-21	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14880 AT2G14880 AT2G14880 AT4G34290
fragaria_vesca	FvH4_2g04600
malus_domestica	MD13G1205100.v1.1
prunus_persica	Prupe.8G139100_v2.0.a1
pyrus_communis	pycom05g09340 pycom10g08680
rosa_chinensis	RchiOBHm_Chr6g0254211
rosa_laevigata	RLG00000014934
rosa_multiflora	Rmu_sc0000010.1_g000013 Rmu_sc0003711.1_g000013 Rmu_sc0003711.1_g000014 Rmu_sc0005652.1_g000031
rosa_roxburghii	Rroxscaffold_7G00211060
rosa_rugosa	Rorug05G0089400 Rorug05G0550700 Rorug05G0551000
rosa_samantha	Rh6AG067100 Rh6BG060300 Rh6CG060200 Rh6DG057200
rosa_wichuraiana	Rw6G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	2 cut(s)	186, 195
AciI	CCGC	5 cut(s)	5, 117, 184, 193, 195
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	1 cut(s)	168
AcuI	CTGAAG	3 cut(s)	296, 296, 377
AfiI	CCNNNNNNNGG	3 cut(s)	105, 130, 446
AgsI	TTSAA	1 cut(s)	433
AjnI	CCWGG	2 cut(s)	29, 267
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
AlwI	GGATC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	274
Ama87I	CYCGRG	2 cut(s)	251, 396
AoxI	GGCC	3 cut(s)	16, 168, 288
ApaI	GGGCCC	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	4 cut(s)	288, 289, 316, 380
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	2 cut(s)	251, 396
AvaII	GGWCC	2 cut(s)	316, 380
AxyI	CCTNAGG	1 cut(s)	104
BaeGI	GKGCMC	2 cut(s)	250, 292
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	2 cut(s)	192, 292
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	2 cut(s)	31, 269
BciVI	GTATCC	1 cut(s)	149
BclI	TGATCA	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	132
BfuI	GTATCC	1 cut(s)	149
BisI	GCNGC	2 cut(s)	6, 196
BlsI	GCNGC	2 cut(s)	7, 197
Bme1390I	CCNGG	2 cut(s)	31, 269
Bme18I	GGWCC	2 cut(s)	316, 380
BmeT110I	CYCGRG	2 cut(s)	251, 396
BmgT120I	GGNCC	4 cut(s)	288, 289, 316, 380
BmiI	GGNNCC	3 cut(s)	247, 290, 318
BmrFI	CCNGG	2 cut(s)	31, 269
BmsI	GCATC	2 cut(s)	207, 219
BpmI	CTGGAG	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	193, 267
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 130, 446
Bse118I	RCCGGY	1 cut(s)	166
Bse21I	CCTNAGG	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	31, 269
BseDI	CCNNGG	2 cut(s)	193, 267
BseGI	GGATG	2 cut(s)	35, 92
BseLI	CCNNNNNNNGG	3 cut(s)	105, 130, 446
BseMII	CTCAG	2 cut(s)	118, 216
BseRI	GAGGAG	3 cut(s)	16, 76, 88
BseSI	GKGCMC	2 cut(s)	250, 292
Bsh1236I	CGCG	2 cut(s)	186, 195
BshFI	GGCC	3 cut(s)	18, 170, 290
BshNI	GGYRCC	1 cut(s)	245
BsiHKCI	CYCGRG	2 cut(s)	251, 396
BsiSI	CCGG	2 cut(s)	51, 167
BslI	CCNNNNNNNGG	3 cut(s)	105, 130, 446
BsnI	GGCC	3 cut(s)	18, 170, 290
BsoBI	CYCGRG	2 cut(s)	251, 396
Bsp120I	GGGCCC	1 cut(s)	288
Bsp1286I	GDGCHC	3 cut(s)	192, 250, 292
Bsp143I	GATC	4 cut(s)	333, 364, 412, 471
BspACI	CCGC	5 cut(s)	5, 117, 184, 193, 195
BspANI	GGCC	3 cut(s)	18, 170, 290
BspCNI	CTCAG	2 cut(s)	117, 217
BspFNI	CGCG	2 cut(s)	186, 195
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	3 cut(s)	247, 290, 318
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	479
BspT107I	GGYRCC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	166
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	193, 267
BssMI	GATC	4 cut(s)	333, 364, 412, 471
Bst2UI	CCWGG	2 cut(s)	31, 269
Bst4CI	ACNGT	1 cut(s)	384
BstC8I	GCNNGC	3 cut(s)	168, 188, 234
BstDEI	CTNAG	2 cut(s)	104, 225
BstDSI	CCRYGG	1 cut(s)	193
BstENI	CCTNNNNNAGG	2 cut(s)	103, 444
BstF5I	GGATG	2 cut(s)	35, 92
BstFNI	CGCG	2 cut(s)	186, 195
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	4 cut(s)	336, 367, 415, 474
BstMBI	GATC	4 cut(s)	333, 364, 412, 471
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 192, 229
BstNI	CCWGG	2 cut(s)	31, 269
BstSCI	CCNGG	2 cut(s)	29, 267
BstSLI	GKGCMC	2 cut(s)	250, 292
BstUI	CGCG	2 cut(s)	186, 195
Bsu36I	CCTNAGG	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	149
BsuRI	GGCC	3 cut(s)	18, 170, 290
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	35, 92
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	168, 188, 234
CaiI	CAGNNNCTG	1 cut(s)	274
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	166
Cfr13I	GGNCC	4 cut(s)	288, 289, 316, 380
Cfr42I	CCGCGG	1 cut(s)	196
CviAII	CATG	2 cut(s)	130, 202
DdeI	CTNAG	2 cut(s)	104, 225
DpnI	GATC	4 cut(s)	335, 366, 414, 473
DpnII	GATC	4 cut(s)	333, 364, 412, 471
EaeI	YGGCCR	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	2 cut(s)	192, 292
Eco47I	GGWCC	2 cut(s)	316, 380
Eco57I	CTGAAG	3 cut(s)	296, 296, 377
Eco81I	CCTNAGG	1 cut(s)	104
Eco88I	CYCGRG	2 cut(s)	251, 396
EcoNI	CCTNNNNNAGG	2 cut(s)	103, 444
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	2 cut(s)	29, 267
EcoT38I	GRGCYC	2 cut(s)	192, 292
FaeI	CATG	2 cut(s)	133, 205
FaiI	YATR	3 cut(s)	131, 203, 338
FalI	AAGNNNNNCTT	2 cut(s)	442, 474
FatI	CATG	2 cut(s)	129, 201
FauI	CCCGC	3 cut(s)	124, 191, 200
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	6, 196
FokI	GGATG	2 cut(s)	22, 79
FriOI	GRGCYC	2 cut(s)	192, 292
Fsp4HI	GCNGC	2 cut(s)	6, 196
FspI	TGCGCA	1 cut(s)	128
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	2 cut(s)	6, 196
GsuI	CTGGAG	1 cut(s)	13
HaeIII	GGCC	3 cut(s)	18, 170, 290
HapII	CCGG	2 cut(s)	51, 167
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	133, 205
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HpaII	CCGG	2 cut(s)	51, 167
HphI	GGTGA	1 cut(s)	407
Hpy188I	TCNGA	2 cut(s)	276, 471
Hpy188III	TCNNGA	3 cut(s)	202, 314, 396
Hpy99I	CGWCG	2 cut(s)	64, 67
HpyAV	CCTTC	2 cut(s)	52, 371
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	232, 372
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 192, 229
HpyF3I	CTNAG	2 cut(s)	104, 225
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	133, 205
HspAI	GCGC	1 cut(s)	127
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	412
KspI	CCGCGG	1 cut(s)	196
Kzo9I	GATC	4 cut(s)	333, 364, 412, 471
LweI	GCATC	2 cut(s)	207, 219
MaeII	ACGT	1 cut(s)	59
MalI	GATC	4 cut(s)	335, 366, 414, 473
MboI	GATC	4 cut(s)	333, 364, 412, 471
MboII	GAAGA	4 cut(s)	302, 343, 370, 462
MhlI	GDGCHC	3 cut(s)	192, 250, 292
MmeI	TCCRAC	1 cut(s)	368
MroNI	GCCGGC	1 cut(s)	166
MseI	TTAA	2 cut(s)	297, 478
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	2 cut(s)	51, 167
MspR9I	CCNGG	2 cut(s)	31, 269
MvaI	CCWGG	2 cut(s)	31, 269
MvnI	CGCG	2 cut(s)	186, 195
MwoI	GCNNNNNNNGC	3 cut(s)	133, 192, 229
NaeI	GCCGGC	1 cut(s)	168
NdeII	GATC	4 cut(s)	333, 364, 412, 471
NgoMIV	GCCGGC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	133, 205
NlaIV	GGNNCC	3 cut(s)	247, 290, 318
NsbI	TGCGCA	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	396
PagI	TCATGA	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	18
PdiI	GCCGGC	1 cut(s)	168
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	7, 197
PpuMI	RGGWCCY	1 cut(s)	316
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	29, 267
PspGI	CCWGG	2 cut(s)	29, 267
PspN4I	GGNNCC	3 cut(s)	247, 290, 318
PspOMI	GGGCCC	1 cut(s)	288
PspPI	GGNCC	4 cut(s)	288, 289, 316, 380
PspPPI	RGGWCCY	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	274
SacII	CCGCGG	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	297, 478
SatI	GCNGC	2 cut(s)	6, 196
Sau3AI	GATC	4 cut(s)	333, 364, 412, 471
Sau96I	GGNCC	4 cut(s)	288, 289, 316, 380
ScrFI	CCNGG	2 cut(s)	31, 269
SduI	GDGCHC	3 cut(s)	192, 250, 292
SetI	ASST	6 cut(s)	44, 62, 110, 126, 357, 403
SfaNI	GCATC	2 cut(s)	207, 219
Sfr274I	CTCGAG	1 cut(s)	396
Sfr303I	CCGCGG	1 cut(s)	196
SgrBI	CCGCGG	1 cut(s)	196
SinI	GGWCC	2 cut(s)	316, 380
SlaI	CTCGAG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	5 cut(s)	5, 117, 184, 193, 195
StuI	AGGCCT	1 cut(s)	18
StyD4I	CCNGG	2 cut(s)	29, 267
TaaI	ACNGT	1 cut(s)	384
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	161, 397
TauI	GCSGC	2 cut(s)	8, 198
Tru1I	TTAA	2 cut(s)	297, 478
Tru9I	TTAA	2 cut(s)	297, 478
TscAI	CASTG	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	2 cut(s)	316, 380
XagI	CCTNNNNNAGG	2 cut(s)	103, 444
XhoI	CTCGAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.