RchiOBHm_Chr6g0254211

SWI complex, BAF60b domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0007672
Physical Location & Seq
Reverse (-)
9235320 .. 9238747
3428 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22801

Sequence Viewer

Length: 450 bp
ATGGCGTTGTCAACAGGCCTCATCACCTCCACCACCTTCCTCTCCGGCGAGACGTCGTCGCTGGCCAAGCCTTCTCTCGCCGCCGCCGCCTCCTCCTCCTCCGCTCTCAGGTTCGCCTACCCCAACTTCCCTGCTAACCTCCGCATGCCGCGCACACCAACCCCCCTCGCCGCCGTGTCGAAGCAGGCCACCACCACCCCACGGGAGCCACGTGGCATCATGAAGCCGCGCAAGGTGTCGCCGGAGATGCAGGCCCTTGTCGGCGTCCCTGAGATTTCTCGCACCCAAGCTCTGAAGCTGATTTGGGCCCACATTAAGGGCAACAATCTTCAGGACCCTGAAAACAAGAAGATCATTGTTTGTGATGACAAGCTGAAGAAGATTTTTGCAGGGAAGGACCGTGTTGGCTTTCTTGAGGTTGCTGGACTGATTACCCCGCATTTCCTTTGA

Protein Analysis

149

Amino Acids

16.05

Weight (kDa)

10.2

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 75 - 148 7.7e-29 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 56
AccBSI CCGCTC 1 cut(s) 104
AccII CGCG 2 cut(s) 151, 229
AciI CCGC 9 cut(s) 81, 84, 87, 102, 142, 149, 171, 227, 437
AcoI YGGCCR 1 cut(s) 63
AcuI CTGAAG 3 cut(s) 314, 314, 395
AcvI CACGTG 1 cut(s) 212
AcyI GRCGYC 2 cut(s) 53, 264
AfiI CCNNNNNNNGG 3 cut(s) 108, 201, 316
AluBI AGCT 3 cut(s) 290, 298, 373
AluI AGCT 3 cut(s) 290, 298, 373
Alw26I GTCTC 1 cut(s) 44
AoxI GGCC 5 cut(s) 16, 63, 186, 252, 306
ApaI GGGCCC 1 cut(s) 310
AspLEI GCGC 2 cut(s) 153, 231
AspS9I GGNCC 5 cut(s) 253, 306, 307, 334, 397
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 2 cut(s) 334, 397
BaeGI GKGCMC 1 cut(s) 310
BalI TGGCCA 1 cut(s) 65
BanII GRGCYC 1 cut(s) 310
BbrPI CACGTG 1 cut(s) 212
BceAI ACGGC 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 44
BisI GCNGC 6 cut(s) 81, 84, 87, 149, 171, 227
BlsI GCNGC 6 cut(s) 82, 85, 88, 150, 172, 228
Bme18I GGWCC 2 cut(s) 334, 397
BmgT120I GGNCC 5 cut(s) 253, 306, 307, 334, 397
BmiI GGNNCC 3 cut(s) 207, 308, 336
BmsI GCATC 2 cut(s) 225, 237
BpuEI CTTGAG 1 cut(s) 434
BsaAI YACGTR 1 cut(s) 212
BsaHI GRCGYC 2 cut(s) 53, 264
BsaJI CCNNGG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 201, 316
BseDI CCNNGG 1 cut(s) 200
BseLI CCNNNNNNNGG 3 cut(s) 108, 201, 316
BseMII CTCAG 2 cut(s) 121, 261
BseRI GAGGAG 3 cut(s) 82, 85, 88
BseSI GKGCMC 1 cut(s) 310
Bsh1236I CGCG 2 cut(s) 151, 229
BshFI GGCC 5 cut(s) 18, 65, 188, 254, 308
BsiSI CCGG 2 cut(s) 45, 242
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 3 cut(s) 108, 201, 316
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 5 cut(s) 18, 65, 188, 254, 308
Bsp120I GGGCCC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 1 cut(s) 351
BspACI CCGC 9 cut(s) 81, 84, 87, 102, 142, 149, 171, 227, 437
BspANI GGCC 5 cut(s) 18, 65, 188, 254, 308
BspCNI CTCAG 2 cut(s) 120, 262
BspFNI CGCG 2 cut(s) 151, 229
BspHI TCATGA 1 cut(s) 219
BspLI GGNNCC 3 cut(s) 207, 308, 336
BsrBI CCGCTC 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 1 cut(s) 351
BssNI GRCGYC 2 cut(s) 53, 264
Bst4CI ACNGT 1 cut(s) 401
BstACI GRCGYC 2 cut(s) 53, 264
BstBAI YACGTR 1 cut(s) 212
BstC8I GCNNGC 4 cut(s) 63, 146, 186, 252
BstDEI CTNAG 2 cut(s) 107, 270
BstDSI CCRYGG 1 cut(s) 200
BstFNI CGCG 2 cut(s) 151, 229
BstHHI GCGC 2 cut(s) 153, 231
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 4 cut(s) 67, 86, 150, 247
BstNSI RCATGY 1 cut(s) 148
BstSLI GKGCMC 1 cut(s) 310
BstUI CGCG 2 cut(s) 151, 229
BsuRI GGCC 5 cut(s) 18, 65, 188, 254, 308
BtgI CCRYGG 1 cut(s) 200
Cac8I GCNNGC 4 cut(s) 63, 146, 186, 252
CciI TCATGA 1 cut(s) 219
CfoI GCGC 2 cut(s) 153, 231
Cfr13I GGNCC 5 cut(s) 253, 306, 307, 334, 397
CseI GACGC 1 cut(s) 253
CviAII CATG 2 cut(s) 145, 220
DdeI CTNAG 2 cut(s) 107, 270
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
EaeI YGGCCR 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 310
Eco47I GGWCC 2 cut(s) 334, 397
Eco57I CTGAAG 3 cut(s) 314, 314, 395
Eco72I CACGTG 1 cut(s) 212
EcoO109I RGGNCCY 2 cut(s) 253, 334
EcoT38I GRGCYC 1 cut(s) 310
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 2 cut(s) 148, 223
FaiI YATR 2 cut(s) 146, 221
FaqI GGGAC 1 cut(s) 251
FatI CATG 2 cut(s) 144, 219
FauI CCCGC 1 cut(s) 444
Fnu4HI GCNGC 6 cut(s) 81, 84, 87, 149, 171, 227
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 6 cut(s) 81, 84, 87, 149, 171, 227
GlaI GCGC 2 cut(s) 152, 230
GluI GCNGC 6 cut(s) 81, 84, 87, 149, 171, 227
HaeIII GGCC 5 cut(s) 18, 65, 188, 254, 308
HapII CCGG 2 cut(s) 45, 242
HgaI GACGC 1 cut(s) 253
HhaI GCGC 2 cut(s) 153, 231
Hin1I GRCGYC 2 cut(s) 53, 264
Hin1II CATG 2 cut(s) 148, 223
Hin6I GCGC 2 cut(s) 151, 229
HinP1I GCGC 2 cut(s) 151, 229
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HpaII CCGG 2 cut(s) 45, 242
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 3 cut(s) 220, 332, 413
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 2 cut(s) 58, 61
HpyAV CCTTC 3 cut(s) 46, 81, 388
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 2 cut(s) 53, 211
HpyCH4V TGCA 2 cut(s) 250, 389
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 86, 150, 247
HpyF3I CTNAG 2 cut(s) 107, 270
HpySE526I ACGT 2 cut(s) 53, 211
Hsp92I GRCGYC 2 cut(s) 53, 264
Hsp92II CATG 2 cut(s) 148, 223
HspAI GCGC 2 cut(s) 151, 229
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 205
LweI GCATC 2 cut(s) 225, 237
MaeII ACGT 2 cut(s) 53, 211
MalI GATC 1 cut(s) 353
MbiI CCGCTC 1 cut(s) 104
MboI GATC 1 cut(s) 351
MboII GAAGA 4 cut(s) 320, 361, 388, 391
MhlI GDGCHC 1 cut(s) 310
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MseI TTAA 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 2 cut(s) 45, 242
MvnI CGCG 2 cut(s) 151, 229
MwoI GCNNNNNNNGC 4 cut(s) 67, 86, 150, 247
NdeII GATC 1 cut(s) 351
NlaIII CATG 2 cut(s) 148, 223
NlaIV GGNNCC 3 cut(s) 207, 308, 336
NspI RCATGY 1 cut(s) 148
PaeI GCATGC 1 cut(s) 148
PagI TCATGA 1 cut(s) 219
PceI AGGCCT 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 208
PflFI GACNNNGTC 1 cut(s) 55
PkrI GCNGC 6 cut(s) 82, 85, 88, 150, 172, 228
PmaCI CACGTG 1 cut(s) 212
PmlI CACGTG 1 cut(s) 212
Ppu21I YACGTR 1 cut(s) 212
PpuMI RGGWCCY 1 cut(s) 334
Psp5II RGGWCCY 1 cut(s) 334
PspCI CACGTG 1 cut(s) 212
PspN4I GGNNCC 3 cut(s) 207, 308, 336
PspOMI GGGCCC 1 cut(s) 306
PspPI GGNCC 5 cut(s) 253, 306, 307, 334, 397
PspPPI RGGWCCY 1 cut(s) 334
PsyI GACNNNGTC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 6 cut(s) 81, 84, 87, 149, 171, 227
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 5 cut(s) 253, 306, 307, 334, 397
SduI GDGCHC 1 cut(s) 310
SfaNI GCATC 2 cut(s) 225, 237
SinI GGWCC 2 cut(s) 334, 397
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
SphI GCATGC 1 cut(s) 148
SseBI AGGCCT 1 cut(s) 18
SsiI CCGC 9 cut(s) 81, 84, 87, 102, 142, 149, 171, 227, 437
StuI AGGCCT 1 cut(s) 18
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 2 cut(s) 56, 214
TaqI TCGA 1 cut(s) 179
TauI GCSGC 6 cut(s) 83, 86, 89, 151, 173, 229
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TspDTI ATGAA 1 cut(s) 236
Tth111I GACNNNGTC 1 cut(s) 55
VpaK11BI GGWCC 2 cut(s) 334, 397
XceI RCATGY 1 cut(s) 148
ZraI GACGTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.