Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007672

Physical Location & Seq

Genomic Coordinates Forward (+)

3527466 .. 3530202

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCGTTGTCAACCGGCCTCATCACCTCCACCACCTTCCTCTCCGGCGAGTCCTCGTCGCCGCTGGCCAAGCCTTCTCTCAGGTTCGCCTACCCCACCTTCCCTGCTAGCCTCCGCATGTCCCCCCGCACCCCAACCCTCCTCGCCGCCGTGTCCAAGCAGGCGGGCGCCGCCGCCACCACGCCGCGGGAGCCACGTGGCATCATGAAGCCGCGCAAGGTTTCGCCGGAGATGCAGGCTCTTGTCGGCGTCCCTGAGATTTCTCGCACCCAAGCTCTCAAGGTCATCTGGGCCCACATTAAGGGCAACAATCTTCAGGACCCTGAAAACAAGAGGATCATTGTTTGTGATGACAAGCTGAAGAAGATTTTTGCAGGCAAGGACCGAGTTGGCTTTCTTGAGGTTGCTGGACTCATCACCCCGCATTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

145

Amino Acids

15.57

Weight (kDa)

10.28

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	70 - 143	4.6e-29	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14880 AT2G14880 AT2G14880 AT4G34290
fragaria_vesca	FvH4_2g04600
malus_domestica	MD13G1205100.v1.1
prunus_persica	Prupe.8G139100_v2.0.a1
pyrus_communis	pycom05g09340 pycom10g08680
rosa_chinensis	RchiOBHm_Chr6g0254211
rosa_laevigata	RLG00000014934
rosa_multiflora	Rmu_sc0000010.1_g000013 Rmu_sc0003711.1_g000013 Rmu_sc0003711.1_g000014 Rmu_sc0005652.1_g000031
rosa_roxburghii	Rroxscaffold_7G00211060
rosa_rugosa	Rorug05G0089400 Rorug05G0550700 Rorug05G0551000
rosa_samantha	Rh6AG067100 Rh6BG060300 Rh6CG060200 Rh6DG057200
rosa_wichuraiana	Rw6G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	2 cut(s)	187, 214
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	2 cut(s)	299, 380
AcvI	CACGTG	1 cut(s)	197
AcyI	GRCGYC	2 cut(s)	168, 249
AfiI	CCNNNNNNNGG	2 cut(s)	186, 301
AluBI	AGCT	2 cut(s)	275, 358
AluI	AGCT	2 cut(s)	275, 358
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	3 cut(s)	16, 66, 291
ApaI	GGGCCC	1 cut(s)	295
AspLEI	GCGC	2 cut(s)	170, 216
AspS9I	GGNCC	4 cut(s)	291, 292, 319, 382
AsuHPI	GGTGA	2 cut(s)	16, 409
AsuNHI	GCTAGC	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	319, 382
BaeGI	GKGCMC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	295
BbrPI	CACGTG	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	6 cut(s)	62, 147, 171, 174, 185, 212
BlsI	GCNGC	6 cut(s)	63, 148, 172, 175, 186, 213
Bme18I	GGWCC	2 cut(s)	319, 382
BmgT120I	GGNCC	4 cut(s)	291, 292, 319, 382
BmiI	GGNNCC	4 cut(s)	169, 192, 293, 321
BmsI	GCATC	2 cut(s)	210, 222
BmtI	GCTAGC	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	263, 419
BsaAI	YACGTR	1 cut(s)	197
BsaHI	GRCGYC	2 cut(s)	168, 249
BsaJI	CCNNGG	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 301
Bse118I	RCCGGY	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	186, 301
BseMII	CTCAG	2 cut(s)	94, 246
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	295
Bsh1236I	CGCG	2 cut(s)	187, 214
BshFI	GGCC	3 cut(s)	18, 68, 293
BshNI	GGYRCC	1 cut(s)	167
BsiSI	CCGG	3 cut(s)	15, 45, 227
BslFI	GGGAC	2 cut(s)	106, 236
BslI	CCNNNNNNNGG	2 cut(s)	186, 301
BsmFI	GGGAC	2 cut(s)	106, 236
BsnI	GGCC	3 cut(s)	18, 68, 293
Bsp120I	GGGCCC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	336
BspANI	GGCC	3 cut(s)	18, 68, 293
BspCNI	CTCAG	2 cut(s)	93, 247
BspFNI	CGCG	2 cut(s)	187, 214
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	4 cut(s)	169, 192, 293, 321
BspOI	GCTAGC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	1 cut(s)	336
BssNI	GRCGYC	2 cut(s)	168, 249
BstACI	GRCGYC	2 cut(s)	168, 249
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	6 cut(s)	66, 109, 162, 166, 237, 376
BstDEI	CTNAG	2 cut(s)	80, 255
BstDSI	CCRYGG	1 cut(s)	185
BstFNI	CGCG	2 cut(s)	187, 214
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	2 cut(s)	170, 216
BstKTI	GATC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 170, 190, 232
BstNSI	RCATGY	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	295
BstUI	CGCG	2 cut(s)	187, 214
BsuRI	GGCC	3 cut(s)	18, 68, 293
BtgI	CCRYGG	1 cut(s)	185
Cac8I	GCNNGC	6 cut(s)	66, 109, 162, 166, 237, 376
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	2 cut(s)	170, 216
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	4 cut(s)	291, 292, 319, 382
Cfr42I	CCGCGG	1 cut(s)	188
CseI	GACGC	1 cut(s)	238
CviAII	CATG	2 cut(s)	118, 205
DdeI	CTNAG	2 cut(s)	80, 255
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	295
Eco47I	GGWCC	2 cut(s)	319, 382
Eco57I	CTGAAG	2 cut(s)	299, 380
Eco72I	CACGTG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	295
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaeI	CATG	2 cut(s)	121, 208
FaiI	YATR	2 cut(s)	119, 206
FaqI	GGGAC	2 cut(s)	106, 236
FatI	CATG	2 cut(s)	117, 204
FauI	CCCGC	4 cut(s)	134, 157, 180, 429
Fnu4HI	GCNGC	6 cut(s)	62, 147, 171, 174, 185, 212
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	6 cut(s)	62, 147, 171, 174, 185, 212
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	2 cut(s)	169, 215
GluI	GCNGC	6 cut(s)	62, 147, 171, 174, 185, 212
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	3 cut(s)	18, 68, 293
HapII	CCGG	3 cut(s)	15, 45, 227
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	2 cut(s)	170, 216
Hin1I	GRCGYC	2 cut(s)	168, 249
Hin1II	CATG	2 cut(s)	121, 208
Hin6I	GCGC	2 cut(s)	168, 214
HinP1I	GCGC	2 cut(s)	168, 214
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	2 cut(s)	50, 411
HpaII	CCGG	3 cut(s)	15, 45, 227
HphI	GGTGA	2 cut(s)	16, 409
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188III	TCNNGA	3 cut(s)	205, 317, 398
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	46, 84, 109
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	235, 374
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 170, 190, 232
HpyF3I	CTNAG	2 cut(s)	80, 255
HpySE526I	ACGT	1 cut(s)	196
Hsp92I	GRCGYC	2 cut(s)	168, 249
Hsp92II	CATG	2 cut(s)	121, 208
HspAI	GCGC	2 cut(s)	168, 214
KasI	GGCGCC	1 cut(s)	167
KspI	CCGCGG	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	190
LweI	GCATC	2 cut(s)	210, 222
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	196
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	3 cut(s)	305, 373, 376
MhlI	GDGCHC	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	68
MluNI	TGGCCA	1 cut(s)	68
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	59, 405
MnlI	CCTC	9 cut(s)	29, 37, 50, 64, 122, 149, 152, 327, 394
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	68
MspA1I	CMGCKG	2 cut(s)	64, 187
MspI	CCGG	3 cut(s)	15, 45, 227
MvnI	CGCG	2 cut(s)	187, 214
MwoI	GCNNNNNNNGC	4 cut(s)	70, 170, 190, 232
NarI	GGCGCC	1 cut(s)	168
NdeII	GATC	1 cut(s)	336
NheI	GCTAGC	1 cut(s)	107
NlaIII	CATG	2 cut(s)	121, 208
NlaIV	GGNNCC	4 cut(s)	169, 192, 293, 321
NspI	RCATGY	1 cut(s)	121
PagI	TCATGA	1 cut(s)	204
PkrI	GCNGC	6 cut(s)	63, 148, 172, 175, 186, 213
PleI	GAGTC	2 cut(s)	58, 405
PluTI	GGCGCC	1 cut(s)	171
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
PpsI	GAGTC	2 cut(s)	58, 405
Ppu21I	YACGTR	1 cut(s)	197
PpuMI	RGGWCCY	1 cut(s)	319
Psp5II	RGGWCCY	1 cut(s)	319
PspCI	CACGTG	1 cut(s)	197
PspN4I	GGNNCC	4 cut(s)	169, 192, 293, 321
PspOMI	GGGCCC	1 cut(s)	291
PspPI	GGNCC	4 cut(s)	291, 292, 319, 382
PspPPI	RGGWCCY	1 cut(s)	319
SacII	CCGCGG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	6 cut(s)	62, 147, 171, 174, 185, 212
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	4 cut(s)	291, 292, 319, 382
SchI	GAGTC	2 cut(s)	59, 405
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	2 cut(s)	210, 222
SfoI	GGCGCC	1 cut(s)	169
Sfr303I	CCGCGG	1 cut(s)	188
SgrBI	CCGCGG	1 cut(s)	188
SinI	GGWCC	2 cut(s)	319, 382
SmlI	CTYRAG	2 cut(s)	278, 398
SmoI	CTYRAG	2 cut(s)	278, 398
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	108
TaiI	ACGT	1 cut(s)	199
TaqII	GACCGA	1 cut(s)	399
TauI	GCSGC	6 cut(s)	64, 149, 173, 176, 187, 214
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TspDTI	ATGAA	1 cut(s)	221
VpaK11BI	GGWCC	2 cut(s)	319, 382
XceI	RCATGY	1 cut(s)	121
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.