Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007672

Physical Location & Seq

Genomic Coordinates Reverse (-)

9556361 .. 9559827

Gene Structure 3467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG060300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCGTTGTCAACAGGGCTCATCACCTCCACCACCTTCCTCTCCGGCGAGACGTCGTCGCTGGCCAAGCCTTCTCTCGCCGCCTCCTCCTCCTCCTCCGCTCTCAGGTCCGCCTACCCCAACTTCCCTGCTAACCTCCGCATGCCGCGCACCCCAACCCCCCTCGCCGCCGTGTCGAAGCAGGCCACCACCACCCCACGGGAGCCACGTGGCATCATGAAGCCGCGCAAGGTGTCGCCGGAGATGCAGGCCCTTGTCGGCGTCCCTGAGATTTCTCGCACCCAAGCTCTGAAGCTGATTTGGGCCCACATTAAGGGCAACAATCTTCAGGACCCTGAAAACAAGAAGATCATCGTTTGTGATGACAAGCTGAAGAAGATTTTTGCAGGGAAGGACCGTGTTGGGTTTCTTGAGGTCGCTGGACTGATTACCCCGCATTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

148

Amino Acids

15.94

Weight (kDa)

10.2

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	74 - 147	7.6e-29	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14880 AT2G14880 AT2G14880 AT4G34290
fragaria_vesca	FvH4_2g04600
malus_domestica	MD13G1205100.v1.1
prunus_persica	Prupe.8G139100_v2.0.a1
pyrus_communis	pycom05g09340 pycom10g08680
rosa_chinensis	RchiOBHm_Chr6g0254211
rosa_laevigata	RLG00000014934
rosa_multiflora	Rmu_sc0000010.1_g000013 Rmu_sc0003711.1_g000013 Rmu_sc0003711.1_g000014 Rmu_sc0005652.1_g000031
rosa_roxburghii	Rroxscaffold_7G00211060
rosa_rugosa	Rorug05G0089400 Rorug05G0550700 Rorug05G0551000
rosa_samantha	Rh6AG067100 Rh6BG060300 Rh6CG060200 Rh6DG057200
rosa_wichuraiana	Rw6G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	101
AccII	CGCG	2 cut(s)	148, 226
AciI	CCGC	8 cut(s)	81, 99, 111, 139, 146, 168, 224, 434
AcoI	YGGCCR	1 cut(s)	63
AcuI	CTGAAG	3 cut(s)	311, 311, 392
AcvI	CACGTG	1 cut(s)	209
AcyI	GRCGYC	2 cut(s)	53, 261
AfiI	CCNNNNNNNGG	3 cut(s)	105, 198, 313
AluBI	AGCT	3 cut(s)	287, 295, 370
AluI	AGCT	3 cut(s)	287, 295, 370
Alw26I	GTCTC	1 cut(s)	44
AoxI	GGCC	4 cut(s)	63, 183, 249, 303
ApaI	GGGCCC	1 cut(s)	307
AspLEI	GCGC	2 cut(s)	150, 228
AspS9I	GGNCC	6 cut(s)	108, 250, 303, 304, 331, 394
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	3 cut(s)	108, 331, 394
BaeGI	GKGCMC	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	65
BanII	GRGCYC	2 cut(s)	21, 307
BbrPI	CACGTG	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	44
BisI	GCNGC	4 cut(s)	81, 146, 168, 224
BlsI	GCNGC	4 cut(s)	82, 147, 169, 225
Bme18I	GGWCC	3 cut(s)	108, 331, 394
BmgT120I	GGNCC	6 cut(s)	108, 250, 303, 304, 331, 394
BmiI	GGNNCC	3 cut(s)	204, 305, 333
BmsI	GCATC	2 cut(s)	222, 234
BpuEI	CTTGAG	1 cut(s)	431
BsaAI	YACGTR	1 cut(s)	209
BsaHI	GRCGYC	2 cut(s)	53, 261
BsaJI	CCNNGG	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 198, 313
BseDI	CCNNGG	1 cut(s)	197
BseLI	CCNNNNNNNGG	3 cut(s)	105, 198, 313
BseMII	CTCAG	2 cut(s)	118, 258
BseRI	GAGGAG	4 cut(s)	76, 79, 82, 85
BseSI	GKGCMC	1 cut(s)	307
Bsh1236I	CGCG	2 cut(s)	148, 226
BshFI	GGCC	4 cut(s)	65, 185, 251, 305
BsiSI	CCGG	2 cut(s)	45, 239
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	3 cut(s)	105, 198, 313
BsmAI	GTCTC	1 cut(s)	44
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	4 cut(s)	65, 185, 251, 305
Bsp120I	GGGCCC	1 cut(s)	303
Bsp1286I	GDGCHC	2 cut(s)	21, 307
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	8 cut(s)	81, 99, 111, 139, 146, 168, 224, 434
BspANI	GGCC	4 cut(s)	65, 185, 251, 305
BspCNI	CTCAG	2 cut(s)	117, 259
BspFNI	CGCG	2 cut(s)	148, 226
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	3 cut(s)	204, 305, 333
BsrBI	CCGCTC	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	1 cut(s)	348
BssNI	GRCGYC	2 cut(s)	53, 261
Bst4CI	ACNGT	1 cut(s)	398
BstACI	GRCGYC	2 cut(s)	53, 261
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	4 cut(s)	63, 143, 183, 249
BstDEI	CTNAG	2 cut(s)	104, 267
BstDSI	CCRYGG	1 cut(s)	197
BstFNI	CGCG	2 cut(s)	148, 226
BstHHI	GCGC	2 cut(s)	150, 228
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 147, 244
BstNSI	RCATGY	1 cut(s)	145
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	2 cut(s)	148, 226
BsuRI	GGCC	4 cut(s)	65, 185, 251, 305
BtgI	CCRYGG	1 cut(s)	197
Cac8I	GCNNGC	4 cut(s)	63, 143, 183, 249
CciI	TCATGA	1 cut(s)	216
CfoI	GCGC	2 cut(s)	150, 228
Cfr13I	GGNCC	6 cut(s)	108, 250, 303, 304, 331, 394
CseI	GACGC	1 cut(s)	250
CviAII	CATG	2 cut(s)	142, 217
DdeI	CTNAG	2 cut(s)	104, 267
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	63
EciI	GGCGGA	1 cut(s)	100
Eco24I	GRGCYC	2 cut(s)	21, 307
Eco47I	GGWCC	3 cut(s)	108, 331, 394
Eco57I	CTGAAG	3 cut(s)	311, 311, 392
Eco72I	CACGTG	1 cut(s)	209
EcoO109I	RGGNCCY	2 cut(s)	250, 331
EcoT38I	GRGCYC	2 cut(s)	21, 307
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	2 cut(s)	145, 220
FaiI	YATR	2 cut(s)	143, 218
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	2 cut(s)	141, 216
FauI	CCCGC	1 cut(s)	441
Fnu4HI	GCNGC	4 cut(s)	81, 146, 168, 224
FriOI	GRGCYC	2 cut(s)	21, 307
Fsp4HI	GCNGC	4 cut(s)	81, 146, 168, 224
GlaI	GCGC	2 cut(s)	149, 227
GluI	GCNGC	4 cut(s)	81, 146, 168, 224
HaeIII	GGCC	4 cut(s)	65, 185, 251, 305
HapII	CCGG	2 cut(s)	45, 239
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	2 cut(s)	150, 228
Hin1I	GRCGYC	2 cut(s)	53, 261
Hin1II	CATG	2 cut(s)	145, 220
Hin6I	GCGC	2 cut(s)	148, 226
HinP1I	GCGC	2 cut(s)	148, 226
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HpaII	CCGG	2 cut(s)	45, 239
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	3 cut(s)	217, 329, 410
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	2 cut(s)	58, 61
HpyAV	CCTTC	3 cut(s)	46, 81, 385
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4IV	ACGT	2 cut(s)	53, 208
HpyCH4V	TGCA	2 cut(s)	247, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 147, 244
HpyF3I	CTNAG	2 cut(s)	104, 267
HpySE526I	ACGT	2 cut(s)	53, 208
Hsp92I	GRCGYC	2 cut(s)	53, 261
Hsp92II	CATG	2 cut(s)	145, 220
HspAI	GCGC	2 cut(s)	148, 226
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	202
LweI	GCATC	2 cut(s)	222, 234
MaeII	ACGT	2 cut(s)	53, 208
MalI	GATC	1 cut(s)	350
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	1 cut(s)	348
MboII	GAAGA	4 cut(s)	317, 358, 385, 388
MhlI	GDGCHC	2 cut(s)	21, 307
MlsI	TGGCCA	1 cut(s)	65
MluNI	TGGCCA	1 cut(s)	65
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	312
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	2 cut(s)	45, 239
MvnI	CGCG	2 cut(s)	148, 226
MwoI	GCNNNNNNNGC	3 cut(s)	67, 147, 244
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	2 cut(s)	145, 220
NlaIV	GGNNCC	3 cut(s)	204, 305, 333
NspI	RCATGY	1 cut(s)	145
PaeI	GCATGC	1 cut(s)	145
PagI	TCATGA	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PflFI	GACNNNGTC	1 cut(s)	55
PkrI	GCNGC	4 cut(s)	82, 147, 169, 225
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	331
Psp5II	RGGWCCY	1 cut(s)	331
PspCI	CACGTG	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	204, 305, 333
PspOMI	GGGCCC	1 cut(s)	303
PspPI	GGNCC	6 cut(s)	108, 250, 303, 304, 331, 394
PspPPI	RGGWCCY	1 cut(s)	331
PsyI	GACNNNGTC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	4 cut(s)	81, 146, 168, 224
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	6 cut(s)	108, 250, 303, 304, 331, 394
SduI	GDGCHC	2 cut(s)	21, 307
SfaNI	GCATC	2 cut(s)	222, 234
SinI	GGWCC	3 cut(s)	108, 331, 394
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SphI	GCATGC	1 cut(s)	145
SsiI	CCGC	8 cut(s)	81, 99, 111, 139, 146, 168, 224, 434
TaaI	ACNGT	1 cut(s)	398
TaiI	ACGT	2 cut(s)	56, 211
TaqI	TCGA	1 cut(s)	176
TauI	GCSGC	4 cut(s)	83, 148, 170, 226
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TspDTI	ATGAA	1 cut(s)	233
Tth111I	GACNNNGTC	1 cut(s)	55
VpaK11BI	GGWCC	3 cut(s)	108, 331, 394
XceI	RCATGY	1 cut(s)	145
ZraI	GACGTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.