Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007672

Physical Location & Seq

Genomic Coordinates Reverse (-)

73917502 .. 73918706

Gene Structure 1205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0551000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTGGAGGCAGGTCATTGTAAGCCGGATGTGTTTACTGTCACCGCAATAATAAAAGGCTTTCGCATGATAGGAAACAACACTGCAGCTATTCAGTTACTTGGGAAGATGGAAGAAAGAGGATGCGAGCCTGACATATTTACCTATAGCACCATCATTCACAGTCTTTGCAAGGATACACTAATTGATGAAGCGTTGAACCTCTTCGCAGAAATGATTAGTCGAGGTATTGCTCCGAACGTTGTTACTTACACCTCTTTGATTCAAGGAGTTTGCAATATAGGCCAGTGGAAACGAGCTACGGGGTTGTTGAATGAAATGGCGAGTAAAGCGGGGAGACTACAAGAAGCAGAAAAGTTGTTCTCTGAGATGCTAGGTTGTGGCCAGCTTCCGGATGTTGAAACTTATGCTGTGATACTTGATGGCCTGTGTAACAACCAGCAACTTTCTACAGCAGTAGAATTGCTTAGAGAGATGGAAGCCAACAAAATAGAACTTGATATTGTAGTTTACACTCTTGTTATTGAAGAAAAGTTGCTGAGAGAAATGGGAGGGAAAGGCTGTTCTCCAGATGGTTGCACCTATAACACCATTATTCGAGGGTTGTTAAATAACAGTAAAACATCATGGGCCATGAAATTTATTCAAGAAATGGTGGAGTTGGGTTTCTCTGCAGATGCTTCAACTATGGAATTGATAGTTGGTTTATTGTCAAAGGATATTGTAGATCCAGCTTTGCTGCCGCTGTTTAAAGGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

253

Amino Acids

27.71

Weight (kDa)

4.8

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	7 - 54	3.2e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	7 - 105	6.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	9 - 58	1.5e-13	PPR repeat family
PPR_1	PF12854	40 - 72	3.2e-13	PPR repeat
PPR_2	PF13041	46 - 93	9.2e-17	PPR repeat family
PPR	PF01535	47 - 77	3.9e-07	PPR repeat
PPR_1	PF12854	75 - 107	3e-10	PPR repeat
PPR_2	PF13041	80 - 110	1.8e-06	PPR repeat family
PPR_2	PF13041	110 - 145	1.2e-08	PPR repeat family
PPR_1	PF12854	128 - 160	1.5e-07	PPR repeat
PPR_2	PF13041	131 - 175	2e-08	PPR repeat family
PPR_1	PF12854	186 - 219	2.2e-06	PPR repeat
PPR_2	PF13041	190 - 232	7.4e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14880 AT2G14880 AT2G14880 AT4G34290
fragaria_vesca	FvH4_2g04600
malus_domestica	MD13G1205100.v1.1
prunus_persica	Prupe.8G139100_v2.0.a1
pyrus_communis	pycom05g09340 pycom10g08680
rosa_chinensis	RchiOBHm_Chr6g0254211
rosa_laevigata	RLG00000014934
rosa_multiflora	Rmu_sc0000010.1_g000013 Rmu_sc0003711.1_g000013 Rmu_sc0003711.1_g000014 Rmu_sc0005652.1_g000031
rosa_roxburghii	Rroxscaffold_7G00211060
rosa_rugosa	Rorug05G0089400 Rorug05G0550700 Rorug05G0551000
rosa_samantha	Rh6AG067100 Rh6BG060300 Rh6CG060200 Rh6DG057200
rosa_wichuraiana	Rw6G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	3 cut(s)	45, 332, 743
AclI	AACGTT	1 cut(s)	240
AclWI	GGATC	1 cut(s)	722
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	638
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	7 cut(s)	199, 266, 313, 401, 527, 647, 684
AjuI	GAANNNNNNNTTGG	2 cut(s)	684, 716
AloI	GAACNNNNNNTCC	2 cut(s)	547, 579
AluBI	AGCT	4 cut(s)	89, 299, 388, 734
AluI	AGCT	4 cut(s)	89, 299, 388, 734
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	1 cut(s)	722
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	4 cut(s)	283, 382, 424, 630
ApeKI	GCWGC	2 cut(s)	86, 739
ApoI	RAATTY	1 cut(s)	638
Asp700I	GAANNNNTTC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	630
AsuHPI	GGTGA	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	98, 726
BccI	CCATC	5 cut(s)	103, 161, 416, 469, 566
BciVI	GTATCC	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	4 cut(s)	84, 145, 450, 672
BfuAI	ACCTGC	1 cut(s)	2
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	3 cut(s)	87, 740, 743
BlsI	GCNGC	3 cut(s)	88, 741, 744
BmgT120I	GGNCC	1 cut(s)	630
BmsI	GCATC	3 cut(s)	113, 360, 667
BpmI	CTGGAG	1 cut(s)	552
BsaWI	WCCGGW	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	286
BseAI	TCCGGA	1 cut(s)	391
BseGI	GGATG	3 cut(s)	34, 128, 400
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMII	CTCAG	2 cut(s)	357, 530
BseNI	ACTGG	1 cut(s)	286
BseXI	GCAGC	2 cut(s)	98, 726
BshFI	GGCC	4 cut(s)	285, 384, 426, 632
BsiSI	CCGG	2 cut(s)	26, 392
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	1 cut(s)	331
BsnI	GGCC	4 cut(s)	285, 384, 426, 632
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	1 cut(s)	727
BspACI	CCGC	3 cut(s)	45, 332, 743
BspANI	GGCC	4 cut(s)	285, 384, 426, 632
BspCNI	CTCAG	2 cut(s)	358, 531
BspEI	TCCGGA	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	758
BspMAI	CTGCAG	2 cut(s)	88, 676
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	286
BssMI	GATC	1 cut(s)	727
Bst4CI	ACNGT	3 cut(s)	40, 164, 617
Bst6I	CTCTTC	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	128, 386
BstDEI	CTNAG	3 cut(s)	366, 467, 539
BstF5I	GGATG	3 cut(s)	34, 128, 400
BstKTI	GATC	1 cut(s)	730
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	727
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 329
BstSFI	CTRYAG	4 cut(s)	84, 145, 450, 672
BstV1I	GCAGC	2 cut(s)	98, 726
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	4 cut(s)	285, 384, 426, 632
BtsCI	GGATG	3 cut(s)	34, 128, 400
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	81, 293
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	2 cut(s)	128, 386
CciI	TCATGA	1 cut(s)	758
Cfr13I	GGNCC	1 cut(s)	630
CviAII	CATG	4 cut(s)	67, 627, 634, 759
DdeI	CTNAG	3 cut(s)	366, 467, 539
DpnI	GATC	1 cut(s)	729
DpnII	GATC	1 cut(s)	727
DraI	TTTAAA	1 cut(s)	751
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
FaeI	CATG	4 cut(s)	70, 630, 637, 762
FatI	CATG	4 cut(s)	66, 626, 633, 758
FauI	CCCGC	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	87, 740, 743
FokI	GGATG	3 cut(s)	41, 135, 407
Fsp4HI	GCNGC	3 cut(s)	87, 740, 743
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	3 cut(s)	87, 740, 743
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	4 cut(s)	285, 384, 426, 632
HapII	CCGG	2 cut(s)	26, 392
Hin1II	CATG	4 cut(s)	70, 630, 637, 762
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	2 cut(s)	26, 392
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	36, 511
Hpy188I	TCNGA	2 cut(s)	237, 367
Hpy188III	TCNNGA	4 cut(s)	392, 569, 647, 759
Hpy8I	GTNNAC	2 cut(s)	36, 511
HpyCH4III	ACNGT	3 cut(s)	40, 164, 617
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	5 cut(s)	86, 171, 276, 579, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 329
HpyF3I	CTNAG	3 cut(s)	366, 467, 539
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	4 cut(s)	70, 630, 637, 762
Kpn2I	TCCGGA	1 cut(s)	391
Kzo9I	GATC	1 cut(s)	727
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	9 cut(s)	39, 144, 299, 398, 405, 440, 452, 582, 744
Lsp1109I	GCAGC	2 cut(s)	98, 726
LweI	GCATC	3 cut(s)	113, 360, 667
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	4 cut(s)	40, 96, 244, 431
MalI	GATC	1 cut(s)	729
MboI	GATC	1 cut(s)	727
MboII	GAAGA	4 cut(s)	118, 125, 196, 539
MflI	RGATCY	1 cut(s)	727
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	4 cut(s)	183, 461, 638, 692
MluNI	TGGCCA	1 cut(s)	384
MnlI	CCTC	6 cut(s)	113, 212, 218, 265, 545, 593
Mox20I	TGGCCA	1 cut(s)	384
MroI	TCCGGA	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	2 cut(s)	608, 750
Msp20I	TGGCCA	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	745
MspI	CCGG	2 cut(s)	26, 392
MwoI	GCNNNNNNNGC	2 cut(s)	282, 329
NdeII	GATC	1 cut(s)	727
NlaIII	CATG	4 cut(s)	70, 630, 637, 762
NmuCI	GTSAC	1 cut(s)	40
PagI	TCATGA	1 cut(s)	758
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	88, 741, 744
Psp1406I	AACGTT	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	630
PstI	CTGCAG	2 cut(s)	88, 676
PsuI	RGATCY	1 cut(s)	727
SaqAI	TTAA	2 cut(s)	608, 750
SatI	GCNGC	3 cut(s)	87, 740, 743
Sau3AI	GATC	1 cut(s)	727
Sau96I	GGNCC	1 cut(s)	630
SfaNI	GCATC	3 cut(s)	113, 360, 667
SfcI	CTRYAG	4 cut(s)	84, 145, 450, 672
Sse9I	AATT	4 cut(s)	183, 461, 638, 692
SsiI	CCGC	3 cut(s)	45, 332, 743
SspMI	CTAG	1 cut(s)	374
TaaI	ACNGT	3 cut(s)	40, 164, 617
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	223, 598
TasI	AATT	4 cut(s)	183, 461, 638, 692
TauI	GCSGC	1 cut(s)	745
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	2 cut(s)	608, 750
Tru9I	TTAA	2 cut(s)	608, 750
TscAI	CASTG	2 cut(s)	88, 293
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	2 cut(s)	86, 739
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	4 cut(s)	204, 330, 650, 747
TspRI	CASTG	2 cut(s)	88, 293
XapI	RAATTY	1 cut(s)	638
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.