AT4G34290

SWI complex, BAF60b domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007672
Physical Location & Seq
Forward (+)
16410791 .. 16412385
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34290.1

Sequence Viewer

Length: 435 bp
ATGGCTCTTTCTTCTGGAATCTTCTCTACTACTTTTCTCTGCGTCGATACGGCGCCGTTGCGCAGCTCAATGTTGTCTCCATCTTCGCTCCGTTTGTCCCCTAATCATCCGACTAACCTGCGCATGGTTCGAGCTGTAACTTCCGCGGCGGCGGCTTCCTCCGACCCGACAACCACGACCAAGACTCGGGAGCCACGTGGCATCATGAAGCCTCGTCCAGTGTCCCAGGCGATGCAGGATGTCGTTGGCGTTCCTGAAATCCCTCGTACTCAAGCTCTCAAACGCATTTGGGCTTACATCAAGGAACATGACCTTCAAGACCCACAAAACAAGAGGGATATACTCTGCGACGAGAAGCTGAAGAAGATATTTGAAGGCAAAGAACGTGTTGGGTTCTTGGAGATTGCAAAACTCATTGGTCCTCACTTTCTCTGA

Protein Analysis

144

Amino Acids

16.0

Weight (kDa)

9.79

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 70 - 143 3e-30 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 62, 122
Acc36I ACCTGC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 52
AccII CGCG 1 cut(s) 146
AciI CCGC 4 cut(s) 144, 146, 149, 152
AcuI CTGAAG 1 cut(s) 380
AcvI CACGTG 1 cut(s) 197
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 2 cut(s) 124, 186
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 2 cut(s) 317, 374
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 4 cut(s) 66, 134, 275, 358
AluI AGCT 4 cut(s) 66, 134, 275, 358
Alw26I GTCTC 1 cut(s) 81
Ama87I CYCGRG 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 63
AspLEI GCGC 3 cut(s) 55, 63, 123
AspS9I GGNCC 1 cut(s) 419
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 419
BanI GGYRCC 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 197
BbvI GCAGC 1 cut(s) 75
BccI CCATC 1 cut(s) 88
BceAI ACGGC 2 cut(s) 40, 66
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 126
BisI GCNGC 4 cut(s) 64, 147, 150, 153
BlsI GCNGC 4 cut(s) 65, 148, 151, 154
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 419
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 2 cut(s) 54, 192
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 2 cut(s) 210, 222
BpuEI CTTGAG 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 197
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 144, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 186
Bse1I ACTGG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 144, 225
BseGI GGATG 2 cut(s) 106, 244
BseLI CCNNNNNNNGG 2 cut(s) 124, 186
BseNI ACTGG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 186
BslFI GGGAC 2 cut(s) 82, 208
BslI CCNNNNNNNGG 2 cut(s) 124, 186
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 2 cut(s) 82, 208
BsoBI CYCGRG 1 cut(s) 186
BspACI CCGC 4 cut(s) 144, 146, 149, 152
BspFNI CGCG 1 cut(s) 146
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 2 cut(s) 54, 192
BspMI ACCTGC 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 144, 225
BssNI GRCGYC 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 197
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 106, 244
BstFNI CGCG 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 3 cut(s) 55, 63, 123
BstMAI GTCTC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 2 cut(s) 106, 244
BtsIMutI CAGTG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 126
CciI TCATGA 1 cut(s) 204
CfoI GCGC 3 cut(s) 55, 63, 123
Cfr13I GGNCC 1 cut(s) 419
Cfr42I CCGCGG 1 cut(s) 147
CseI GACGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 267
CviAII CATG 3 cut(s) 124, 205, 308
CviJI RGCY 9 cut(s) 5, 66, 134, 155, 193, 211, 275, 293, 358
CviKI_1 RGCY 9 cut(s) 5, 66, 134, 155, 193, 211, 275, 293, 358
CviQI GTAC 1 cut(s) 267
DinI GGCGCC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 380
Eco72I CACGTG 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 225
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
FaeI CATG 3 cut(s) 127, 208, 311
FaiI YATR 4 cut(s) 125, 206, 309, 341
FaqI GGGAC 2 cut(s) 82, 208
FatI CATG 3 cut(s) 123, 204, 307
Fnu4HI GCNGC 4 cut(s) 64, 147, 150, 153
FokI GGATG 2 cut(s) 93, 251
Fsp4HI GCNGC 4 cut(s) 64, 147, 150, 153
FspI TGCGCA 2 cut(s) 62, 122
GlaI GCGC 3 cut(s) 54, 62, 122
GluI GCNGC 4 cut(s) 64, 147, 150, 153
HaeII RGCGCY 1 cut(s) 56
HgaI GACGC 1 cut(s) 31
HhaI GCGC 3 cut(s) 55, 63, 123
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 3 cut(s) 127, 208, 311
Hin6I GCGC 3 cut(s) 53, 61, 121
HinP1I GCGC 3 cut(s) 53, 61, 121
HinfI GANTC 2 cut(s) 18, 184
Hpy188I TCNGA 3 cut(s) 111, 163, 434
Hpy188III TCNNGA 5 cut(s) 15, 188, 205, 254, 317
Hpy99I CGWCG 2 cut(s) 47, 353
HpyAV CCTTC 2 cut(s) 323, 368
HpyCH4IV ACGT 2 cut(s) 196, 385
HpyCH4V TGCA 2 cut(s) 235, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpySE526I ACGT 2 cut(s) 196, 385
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 3 cut(s) 127, 208, 311
HspAI GCGC 3 cut(s) 53, 61, 121
KasI GGCGCC 1 cut(s) 52
KspI CCGCGG 1 cut(s) 147
LmnI GCTCC 2 cut(s) 93, 190
LpnPI CCDG 6 cut(s) 131, 212, 221, 231, 239, 267
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 2 cut(s) 210, 222
MaeII ACGT 2 cut(s) 196, 385
MaeIII GTNAC 1 cut(s) 136
MboII GAAGA 5 cut(s) 3, 13, 75, 373, 376
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 1 cut(s) 178
MmeI TCCRAC 2 cut(s) 134, 186
MnlI CCTC 5 cut(s) 169, 222, 273, 327, 432
MspA1I CMGCKG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 152
NarI GGCGCC 1 cut(s) 53
NlaIII CATG 3 cut(s) 127, 208, 311
NlaIV GGNNCC 2 cut(s) 54, 192
NsbI TGCGCA 2 cut(s) 62, 122
PagI TCATGA 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 193
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 4 cut(s) 65, 148, 151, 154
PleI GAGTC 1 cut(s) 178
PluTI GGCGCC 1 cut(s) 56
PmaCI CACGTG 1 cut(s) 197
PmlI CACGTG 1 cut(s) 197
PpsI GAGTC 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 225
PspCI CACGTG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 54, 192
PspPI GGNCC 1 cut(s) 419
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SacII CCGCGG 1 cut(s) 147
SatI GCNGC 4 cut(s) 64, 147, 150, 153
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 227
SetI ASST 8 cut(s) 68, 120, 136, 199, 277, 315, 360, 388
SfaNI GCATC 2 cut(s) 210, 222
SfoI GGCGCC 1 cut(s) 54
Sfr303I CCGCGG 1 cut(s) 147
SgrBI CCGCGG 1 cut(s) 147
SinI GGWCC 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
SsiI CCGC 4 cut(s) 144, 146, 149, 152
SspDI GGCGCC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 225
TaiI ACGT 2 cut(s) 199, 388
TaqI TCGA 2 cut(s) 45, 130
TauI GCSGC 3 cut(s) 149, 152, 155
TfiI GAWTC 1 cut(s) 18
TscAI CASTG 1 cut(s) 225
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.