Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007672

Physical Location & Seq

Genomic Coordinates Reverse (-)

5876359 .. 5879418

Gene Structure 3060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG057200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCGTTGTCAACAGGCCTCATCACCTCCACCACCTTCCTCTCCGGCGAGACGTCGCCGCTGGCCAAGCCTTCTCTCGCTTCCTCCTCCTCCTCCGCTCTCAGGTTCGCCTACCCCAATTTCCCTGCTAATCTCCGCATGGCTGGCACCCCAACCCCACTCGCCGCCGTGTCCAAGCAGGCCCCCACCACTCCGCGGGAGCCACGTGGCATCATGAAGCCGCGCAAGGTGTCGCCGGAGATGCAGGCCCTCGTCGGCGTCCCTGAGATTTCTCGCACCCAAGCTCTGAAGCTGATTTGGGCCCACATTAAGGCCAACAATCTTCAGGACCCTGAAAACAAGAGGATCATCGTTTGTGATGACAAGCTGAAGAAGATTTTTGCAGGGAAGGACCGTGTTGGCTTTCTTGAGGTTGCTGGACTGATTACCCCGCATTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

147

Amino Acids

15.85

Weight (kDa)

10.14

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	73 - 146	8.5e-30	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14880 AT2G14880 AT2G14880 AT4G34290
fragaria_vesca	FvH4_2g04600
malus_domestica	MD13G1205100.v1.1
prunus_persica	Prupe.8G139100_v2.0.a1
pyrus_communis	pycom05g09340 pycom10g08680
rosa_chinensis	RchiOBHm_Chr6g0254211
rosa_laevigata	RLG00000014934
rosa_multiflora	Rmu_sc0000010.1_g000013 Rmu_sc0003711.1_g000013 Rmu_sc0003711.1_g000014 Rmu_sc0005652.1_g000031
rosa_roxburghii	Rroxscaffold_7G00211060
rosa_rugosa	Rorug05G0089400 Rorug05G0550700 Rorug05G0551000
rosa_samantha	Rh6AG067100 Rh6BG060300 Rh6CG060200 Rh6DG057200
rosa_wichuraiana	Rw6G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	56
AccB1I	GGYRCC	1 cut(s)	146
AccBSI	CCGCTC	1 cut(s)	98
AccII	CGCG	2 cut(s)	196, 223
AciI	CCGC	8 cut(s)	59, 96, 136, 165, 194, 196, 221, 431
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	63
AcuI	CTGAAG	3 cut(s)	308, 308, 389
AcvI	CACGTG	1 cut(s)	206
AcyI	GRCGYC	2 cut(s)	53, 258
AfiI	CCNNNNNNNGG	3 cut(s)	102, 195, 310
AluBI	AGCT	3 cut(s)	284, 292, 367
AluI	AGCT	3 cut(s)	284, 292, 367
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	6 cut(s)	16, 63, 180, 246, 300, 312
ApaI	GGGCCC	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	6 cut(s)	181, 247, 300, 301, 328, 391
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	328, 391
BaeGI	GKGCMC	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	304
BbrPI	CACGTG	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	44
BisI	GCNGC	3 cut(s)	59, 165, 221
BlsI	GCNGC	3 cut(s)	60, 166, 222
Bme18I	GGWCC	2 cut(s)	328, 391
BmgT120I	GGNCC	6 cut(s)	181, 247, 300, 301, 328, 391
BmiI	GGNNCC	5 cut(s)	148, 183, 201, 302, 330
BmsI	GCATC	2 cut(s)	219, 231
BpuEI	CTTGAG	1 cut(s)	428
BsaAI	YACGTR	1 cut(s)	206
BsaHI	GRCGYC	2 cut(s)	53, 258
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 195, 310
BseDI	CCNNGG	1 cut(s)	194
BseLI	CCNNNNNNNGG	3 cut(s)	102, 195, 310
BseMII	CTCAG	2 cut(s)	115, 255
BseRI	GAGGAG	3 cut(s)	76, 79, 82
BseSI	GKGCMC	1 cut(s)	304
Bsh1236I	CGCG	2 cut(s)	196, 223
BshFI	GGCC	6 cut(s)	18, 65, 182, 248, 302, 314
BshNI	GGYRCC	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	45, 236
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	3 cut(s)	102, 195, 310
BsmAI	GTCTC	1 cut(s)	44
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	6 cut(s)	18, 65, 182, 248, 302, 314
Bsp120I	GGGCCC	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	345
BspACI	CCGC	8 cut(s)	59, 96, 136, 165, 194, 196, 221, 431
BspANI	GGCC	6 cut(s)	18, 65, 182, 248, 302, 314
BspCNI	CTCAG	2 cut(s)	114, 256
BspFNI	CGCG	2 cut(s)	196, 223
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	5 cut(s)	148, 183, 201, 302, 330
BspPI	GGATC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	1 cut(s)	345
BssNI	GRCGYC	2 cut(s)	53, 258
Bst4CI	ACNGT	1 cut(s)	395
BstACI	GRCGYC	2 cut(s)	53, 258
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	4 cut(s)	63, 145, 180, 246
BstDEI	CTNAG	2 cut(s)	101, 264
BstDSI	CCRYGG	1 cut(s)	194
BstFNI	CGCG	2 cut(s)	196, 223
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 144, 241
BstSLI	GKGCMC	1 cut(s)	304
BstUI	CGCG	2 cut(s)	196, 223
BsuRI	GGCC	6 cut(s)	18, 65, 182, 248, 302, 314
BtgI	CCRYGG	1 cut(s)	194
Cac8I	GCNNGC	4 cut(s)	63, 145, 180, 246
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	6 cut(s)	181, 247, 300, 301, 328, 391
Cfr42I	CCGCGG	1 cut(s)	197
CseI	GACGC	1 cut(s)	247
CviAII	CATG	2 cut(s)	139, 214
DdeI	CTNAG	2 cut(s)	101, 264
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	63
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	328, 391
Eco57I	CTGAAG	3 cut(s)	308, 308, 389
Eco72I	CACGTG	1 cut(s)	206
EcoO109I	RGGNCCY	3 cut(s)	181, 247, 328
EcoT38I	GRGCYC	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	2 cut(s)	142, 217
FaiI	YATR	2 cut(s)	140, 215
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	2 cut(s)	138, 213
FauI	CCCGC	2 cut(s)	189, 438
Fnu4HI	GCNGC	3 cut(s)	59, 165, 221
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	59, 165, 221
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	3 cut(s)	59, 165, 221
HaeIII	GGCC	6 cut(s)	18, 65, 182, 248, 302, 314
HapII	CCGG	2 cut(s)	45, 236
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	1 cut(s)	225
Hin1I	GRCGYC	2 cut(s)	53, 258
Hin1II	CATG	2 cut(s)	142, 217
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HpaII	CCGG	2 cut(s)	45, 236
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	3 cut(s)	214, 326, 407
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	2 cut(s)	58, 257
HpyAV	CCTTC	3 cut(s)	46, 81, 382
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	2 cut(s)	53, 205
HpyCH4V	TGCA	2 cut(s)	244, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 144, 241
HpyF3I	CTNAG	2 cut(s)	101, 264
HpySE526I	ACGT	2 cut(s)	53, 205
Hsp92I	GRCGYC	2 cut(s)	53, 258
Hsp92II	CATG	2 cut(s)	142, 217
HspAI	GCGC	1 cut(s)	223
KspI	CCGCGG	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	345
LmnI	GCTCC	1 cut(s)	199
LweI	GCATC	2 cut(s)	219, 231
MaeII	ACGT	2 cut(s)	53, 205
MalI	GATC	1 cut(s)	347
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	1 cut(s)	345
MboII	GAAGA	3 cut(s)	314, 382, 385
MhlI	GDGCHC	1 cut(s)	304
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	1 cut(s)	118
MluNI	TGGCCA	1 cut(s)	65
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	61, 196
MspI	CCGG	2 cut(s)	45, 236
MvnI	CGCG	2 cut(s)	196, 223
MwoI	GCNNNNNNNGC	3 cut(s)	67, 144, 241
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	2 cut(s)	142, 217
NlaIV	GGNNCC	5 cut(s)	148, 183, 201, 302, 330
PagI	TCATGA	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	60, 166, 222
PmaCI	CACGTG	1 cut(s)	206
PmlI	CACGTG	1 cut(s)	206
Ppu21I	YACGTR	1 cut(s)	206
PpuMI	RGGWCCY	1 cut(s)	328
Psp5II	RGGWCCY	1 cut(s)	328
PspCI	CACGTG	1 cut(s)	206
PspN4I	GGNNCC	5 cut(s)	148, 183, 201, 302, 330
PspOMI	GGGCCC	1 cut(s)	300
PspPI	GGNCC	6 cut(s)	181, 247, 300, 301, 328, 391
PspPPI	RGGWCCY	1 cut(s)	328
SacII	CCGCGG	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	3 cut(s)	59, 165, 221
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	6 cut(s)	181, 247, 300, 301, 328, 391
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	219, 231
Sfr303I	CCGCGG	1 cut(s)	197
SgrBI	CCGCGG	1 cut(s)	197
SinI	GGWCC	2 cut(s)	328, 391
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	1 cut(s)	118
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	8 cut(s)	59, 96, 136, 165, 194, 196, 221, 431
StuI	AGGCCT	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	2 cut(s)	56, 208
TasI	AATT	1 cut(s)	118
TauI	GCSGC	3 cut(s)	61, 167, 223
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TspDTI	ATGAA	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	328, 391
ZraI	GACGTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.