Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005652.1

Orthogroup ID

OG0007672

Physical Location & Seq

Genomic Coordinates Forward (+)

139451 .. 143184

Gene Structure 3734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005652.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atgaggtggcagatcggtaatggtgttggggttcgagtttggatggatccgtggcttccaaatgtctatccttttgttccggtgcctcaggcaattggtgtggatgtcactttgcttgtggagaatcttcttttagctccagggaggtgggatatgaataaggtgcatgcctgtaaactcttcttgggactacaacatgcagctaatggtgggggtgcagcagttatttcaaaggtttggaaaggtgtatggcaagcttgtattcctggaactgctcgaatttgcatatggaaagtgcttcagaacatattgcctacagttgacagattggtgtcaaagggagtacaaattgagtcttatttgtctgtgctgtgtgggatggggaatgagtcctcagatcatttatgtcgtttatgtccttttacgaagactttattggagtcggaggaagagctcaagcaagtttgttatgaggagaggaatcatagagtttgggaacaggtagaggcccgggaaggtgatatgcttttcagcttaaatgctaggcttactgacttccagttctataggaggtcatttcctaggattgagaaggggagttgtaggtggaaacctcctgctcaagaacatgtggaggctcttgctggtaaagcagctgtgaagtatgtacgagataaagggctctctccagtagtgtttgagacggattctttaactctttctaatgctactaagcaagttgtcattccccatacttcccaattgggtcgtgtgtatgatgacataatagaaaagttgaatttcattccaggattctcagaaaacttccttcatgaaagttgtagaacgcgtcgatacgagttcgtggacatgcggaacgcattaatcggagttcatcagttcgcctcctcagtctggtcacccctgtggtgttctctagtggcgatatccaccgtgtgtggcacagcaaggcggagcaggttggtgttttcggacccgaccggaaaacgtagctccggcgaccgtacggcttcaagtttccttccttggcttcgtgggggtcgtctgagtcgatctatggtgtttgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

RVT_1 zf-RVT

Protein Analysis

363

Amino Acids

40.94

Weight (kDa)

9.12

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14880 AT2G14880 AT2G14880 AT4G34290
fragaria_vesca	FvH4_2g04600
malus_domestica	MD13G1205100.v1.1
prunus_persica	Prupe.8G139100_v2.0.a1
pyrus_communis	pycom05g09340 pycom10g08680
rosa_chinensis	RchiOBHm_Chr6g0254211
rosa_laevigata	RLG00000014934
rosa_multiflora	Rmu_sc0000010.1_g000013 Rmu_sc0003711.1_g000013 Rmu_sc0003711.1_g000014 Rmu_sc0005652.1_g000031
rosa_roxburghii	Rroxscaffold_7G00211060
rosa_rugosa	Rorug05G0089400 Rorug05G0550700 Rorug05G0551000
rosa_samantha	Rh6AG067100 Rh6BG060300 Rh6CG060200 Rh6DG057200
rosa_wichuraiana	Rw6G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	969
AccB1I	GGYRCC	1 cut(s)	82
AccII	CGCG	1 cut(s)	850
AciI	CCGC	2 cut(s)	874, 973
AclWI	GGATC	2 cut(s)	41, 54
AcsI	RAATTY	2 cut(s)	279, 799
AcuI	CTGAAG	1 cut(s)	284
AdeI	CACNNNGTG	1 cut(s)	957
AfaI	GTAC	3 cut(s)	345, 669, 1027
AfiI	CCNNNNNNNGG	1 cut(s)	915
AflIII	ACRYGT	2 cut(s)	628, 848
AgsI	TTSAA	3 cut(s)	231, 799, 1035
AjnI	CCWGG	3 cut(s)	139, 265, 808
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AleI	CACNNNNGTG	1 cut(s)	925
AluBI	AGCT	7 cut(s)	137, 203, 257, 454, 534, 656, 1014
AluI	AGCT	7 cut(s)	137, 203, 257, 454, 534, 656, 1014
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	695
AlwI	GGATC	2 cut(s)	41, 54
Ama87I	CYCGRG	1 cut(s)	510
AoxI	GGCC	1 cut(s)	507
ApeKI	GCWGC	3 cut(s)	200, 218, 653
ApoI	RAATTY	2 cut(s)	279, 799
AseI	ATTAAT	1 cut(s)	884
AspA2I	CCTAGG	1 cut(s)	581
AspS9I	GGNCC	2 cut(s)	508, 994
AsuC2I	CCSGG	2 cut(s)	511, 512
AsuHPI	GGTGA	2 cut(s)	530, 912
AvaI	CYCGRG	1 cut(s)	510
AvaII	GGWCC	1 cut(s)	994
AvrII	CCTAGG	1 cut(s)	581
AxyI	CCTNAGG	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	82
BanII	GRGCYC	2 cut(s)	456, 684
BbsI	GAAGAC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	3 cut(s)	212, 230, 665
BccI	CCATC	2 cut(s)	37, 373
BceAI	ACGGC	1 cut(s)	1044
BciT130I	CCWGG	3 cut(s)	141, 267, 810
BcnI	CCSGG	2 cut(s)	511, 512
BcoDI	GTCTC	1 cut(s)	695
BfaI	CTAG	3 cut(s)	543, 582, 938
BfmI	CTRYAG	2 cut(s)	315, 565
BfuAI	ACCTGC	1 cut(s)	969
BisI	GCNGC	3 cut(s)	201, 219, 654
BlnI	CCTAGG	1 cut(s)	581
BlsI	GCNGC	3 cut(s)	202, 220, 655
Bme1390I	CCNGG	5 cut(s)	141, 267, 511, 512, 810
Bme18I	GGWCC	1 cut(s)	994
BmeT110I	CYCGRG	1 cut(s)	510
BmgT120I	GGNCC	2 cut(s)	508, 994
BmiI	GGNNCC	3 cut(s)	48, 84, 996
BmrFI	CCNGG	5 cut(s)	141, 267, 511, 512, 810
BpiI	GAAGAC	1 cut(s)	434
BpmI	CTGGAG	2 cut(s)	123, 672
BpuEI	CTTGAG	2 cut(s)	440, 606
BpuMI	CCSGG	2 cut(s)	511, 512
BsaJI	CCNNGG	5 cut(s)	50, 140, 510, 581, 1046
BsaWI	WCCGGW	2 cut(s)	79, 1001
Bsc4I	CCNNNNNNNGG	1 cut(s)	915
Bse1I	ACTGG	2 cut(s)	559, 689
Bse21I	CCTNAGG	1 cut(s)	87
BseBI	CCWGG	3 cut(s)	141, 267, 810
BseDI	CCNNGG	5 cut(s)	50, 140, 510, 581, 1046
BseGI	GGATG	3 cut(s)	48, 109, 384
BseLI	CCNNNNNNNGG	1 cut(s)	915
BseMII	CTCAG	5 cut(s)	101, 408, 831, 924, 1058
BseNI	ACTGG	2 cut(s)	559, 689
BseRI	GAGGAG	2 cut(s)	488, 898
BseXI	GCAGC	3 cut(s)	212, 230, 665
BsgI	GTGCAG	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	850
Bsh1285I	CGRYCG	2 cut(s)	1002, 1024
BshFI	GGCC	1 cut(s)	509
BshNI	GGYRCC	1 cut(s)	82
BsiEI	CGRYCG	2 cut(s)	1002, 1024
BsiHKAI	GWGCWC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	4 cut(s)	80, 511, 1002, 1017
BsiWI	CGTACG	1 cut(s)	1025
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	915
BsmAI	GTCTC	1 cut(s)	695
BsmBI	CGTCTC	1 cut(s)	695
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	509
BsoBI	CYCGRG	1 cut(s)	510
Bsp1286I	GDGCHC	2 cut(s)	456, 684
Bsp143I	GATC	4 cut(s)	12, 46, 397, 1073
BspACI	CCGC	2 cut(s)	874, 973
BspANI	GGCC	1 cut(s)	509
BspCNI	CTCAG	5 cut(s)	100, 407, 830, 923, 1059
BspFNI	CGCG	1 cut(s)	850
BspHI	TCATGA	1 cut(s)	832
BspLI	GGNNCC	3 cut(s)	48, 84, 996
BspMI	ACCTGC	1 cut(s)	969
BspPI	GGATC	2 cut(s)	41, 54
BspQI	GCTCTTC	1 cut(s)	444
BspT107I	GGYRCC	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	559, 689
BssECI	CCNNGG	5 cut(s)	50, 140, 510, 581, 1046
BssMI	GATC	4 cut(s)	12, 46, 397, 1073
BssT1I	CCWWGG	2 cut(s)	581, 1046
Bst2UI	CCWGG	3 cut(s)	141, 267, 810
Bst4CI	ACNGT	3 cut(s)	319, 955, 1025
Bst6I	CTCTTC	2 cut(s)	185, 444
BstC8I	GCNNGC	2 cut(s)	168, 255
BstDEI	CTNAG	6 cut(s)	87, 394, 732, 817, 910, 1067
BstDSI	CCRYGG	1 cut(s)	50
BstEII	GGTNACC	1 cut(s)	918
BstF5I	GGATG	3 cut(s)	48, 109, 384
BstFNI	CGCG	1 cut(s)	850
BstKTI	GATC	4 cut(s)	15, 49, 400, 1076
BstMAI	GTCTC	1 cut(s)	695
BstMBI	GATC	4 cut(s)	12, 46, 397, 1073
BstMCI	CGRYCG	2 cut(s)	1002, 1024
BstMWI	GCNNNNNNNGC	1 cut(s)	650
BstNI	CCWGG	3 cut(s)	141, 267, 810
BstNSI	RCATGY	4 cut(s)	170, 200, 632, 874
BstPI	GGTNACC	1 cut(s)	918
BstSCI	CCNGG	5 cut(s)	139, 265, 509, 510, 808
BstSFI	CTRYAG	2 cut(s)	315, 565
BstUI	CGCG	1 cut(s)	850
BstV1I	GCAGC	3 cut(s)	212, 230, 665
BstV2I	GAAGAC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	46
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	509
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	3 cut(s)	48, 109, 384
BveI	ACCTGC	1 cut(s)	969
Cac8I	GCNNGC	2 cut(s)	168, 255
CciI	TCATGA	1 cut(s)	832
Cfr13I	GGNCC	2 cut(s)	508, 994
Cfr9I	CCCGGG	1 cut(s)	510
CseI	GACGC	1 cut(s)	839
Csp6I	GTAC	3 cut(s)	344, 668, 1026
CspCI	CAANNNNNGTGG	2 cut(s)	81, 116
CviAII	CATG	5 cut(s)	167, 197, 629, 833, 871
CviQI	GTAC	3 cut(s)	344, 668, 1026
DdeI	CTNAG	6 cut(s)	87, 394, 732, 817, 910, 1067
DpnI	GATC	4 cut(s)	14, 48, 399, 1075
DpnII	GATC	4 cut(s)	12, 46, 397, 1073
DraIII	CACNNNGTG	1 cut(s)	957
Eam1104I	CTCTTC	2 cut(s)	185, 444
EarI	CTCTTC	2 cut(s)	185, 444
EciI	GGCGGA	1 cut(s)	988
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	2 cut(s)	581, 1046
Eco24I	GRGCYC	2 cut(s)	456, 684
Eco32I	GATATC	1 cut(s)	948
Eco47I	GGWCC	1 cut(s)	994
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	284
Eco81I	CCTNAGG	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	510
Eco91I	GGTNACC	1 cut(s)	918
EcoICRI	GAGCTC	1 cut(s)	454
EcoO65I	GGTNACC	1 cut(s)	918
EcoRII	CCWGG	3 cut(s)	139, 265, 808
EcoRV	GATATC	1 cut(s)	948
EcoT14I	CCWWGG	2 cut(s)	581, 1046
EcoT38I	GRGCYC	2 cut(s)	456, 684
ErhI	CCWWGG	2 cut(s)	581, 1046
Esp3I	CGTCTC	1 cut(s)	695
FaeI	CATG	5 cut(s)	170, 200, 632, 836, 874
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	5 cut(s)	166, 196, 628, 832, 870
FauNDI	CATATG	1 cut(s)	287
Fnu4HI	GCNGC	3 cut(s)	201, 219, 654
FokI	GGATG	3 cut(s)	55, 116, 391
FriOI	GRGCYC	2 cut(s)	456, 684
Fsp4HI	GCNGC	3 cut(s)	201, 219, 654
FspBI	CTAG	3 cut(s)	543, 582, 938
GluI	GCNGC	3 cut(s)	201, 219, 654
GsuI	CTGGAG	2 cut(s)	123, 672
HaeIII	GGCC	1 cut(s)	509
HapII	CCGG	4 cut(s)	80, 511, 1002, 1017
HgaI	GACGC	1 cut(s)	839
Hin1II	CATG	5 cut(s)	170, 200, 632, 836, 874
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	8 cut(s)	124, 353, 389, 440, 481, 707, 813, 1069
HpaII	CCGG	4 cut(s)	80, 511, 1002, 1017
HphI	GGTGA	2 cut(s)	530, 912
Hpy166II	GTNNAC	3 cut(s)	176, 322, 868
Hpy188I	TCNGA	7 cut(s)	303, 397, 445, 820, 890, 994, 1068
Hpy188III	TCNNGA	2 cut(s)	623, 833
Hpy8I	GTNNAC	3 cut(s)	176, 322, 868
Hpy99I	CGWCG	1 cut(s)	855
HpyAV	CCTTC	4 cut(s)	509, 586, 839, 1052
HpyCH4III	ACNGT	3 cut(s)	319, 955, 1025
HpyCH4IV	ACGT	1 cut(s)	1009
HpyCH4V	TGCA	4 cut(s)	166, 200, 218, 285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	650
HpyF3I	CTNAG	6 cut(s)	87, 394, 732, 817, 910, 1067
HpySE526I	ACGT	1 cut(s)	1009
Hsp92II	CATG	5 cut(s)	170, 200, 632, 836, 874
Kzo9I	GATC	4 cut(s)	12, 46, 397, 1073
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	3 cut(s)	142, 975, 1019
Lsp1109I	GCAGC	3 cut(s)	212, 230, 665
MaeI	CTAG	3 cut(s)	543, 582, 938
MaeII	ACGT	1 cut(s)	1009
MaeIII	GTNAC	2 cut(s)	106, 918
MalI	GATC	4 cut(s)	14, 48, 399, 1075
MboI	GATC	4 cut(s)	12, 46, 397, 1073
MboII	GAAGA	4 cut(s)	119, 172, 439, 461
MfeI	CAATTG	2 cut(s)	93, 761
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	2 cut(s)	456, 684
MluCI	AATT	5 cut(s)	93, 279, 348, 761, 799
MluI	ACGCGT	1 cut(s)	848
MlyI	GAGTC	4 cut(s)	362, 398, 449, 1078
MmeI	TCCRAC	1 cut(s)	423
MseI	TTAA	3 cut(s)	536, 713, 884
MslI	CAYNNNNRTG	1 cut(s)	925
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	4 cut(s)	80, 511, 1002, 1017
MspR9I	CCNGG	5 cut(s)	141, 267, 511, 512, 810
MunI	CAATTG	2 cut(s)	93, 761
MvaI	CCWGG	3 cut(s)	141, 267, 810
MvnI	CGCG	1 cut(s)	850
MwoI	GCNNNNNNNGC	1 cut(s)	650
NciI	CCSGG	2 cut(s)	511, 512
NdeI	CATATG	1 cut(s)	287
NdeII	GATC	4 cut(s)	12, 46, 397, 1073
NlaIII	CATG	5 cut(s)	170, 200, 632, 836, 874
NlaIV	GGNNCC	3 cut(s)	48, 84, 996
NmuCI	GTSAC	2 cut(s)	106, 918
NspI	RCATGY	4 cut(s)	170, 200, 632, 874
OliI	CACNNNNGTG	1 cut(s)	925
PaeI	GCATGC	1 cut(s)	170
PagI	TCATGA	1 cut(s)	832
PciI	ACATGT	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	2 cut(s)	1060, 1069
PfeI	GAWTC	4 cut(s)	124, 481, 707, 813
Pfl23II	CGTACG	1 cut(s)	1025
PfoI	TCCNGGA	2 cut(s)	265, 808
PkrI	GCNGC	3 cut(s)	202, 220, 655
PleI	GAGTC	4 cut(s)	361, 397, 448, 1077
PpsI	GAGTC	4 cut(s)	361, 397, 448, 1077
PscI	ACATGT	1 cut(s)	628
PshBI	ATTAAT	1 cut(s)	884
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	3 cut(s)	139, 265, 808
PspEI	GGTNACC	1 cut(s)	918
PspGI	CCWGG	3 cut(s)	139, 265, 808
PspLI	CGTACG	1 cut(s)	1025
PspN4I	GGNNCC	3 cut(s)	48, 84, 996
PspPI	GGNCC	2 cut(s)	508, 994
PsuI	RGATCY	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	3 cut(s)	345, 669, 1027
RsaNI	GTAC	3 cut(s)	344, 668, 1026
RseI	CAYNNNNRTG	1 cut(s)	925
SacI	GAGCTC	1 cut(s)	456
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	3 cut(s)	536, 713, 884
SatI	GCNGC	3 cut(s)	201, 219, 654
Sau3AI	GATC	4 cut(s)	12, 46, 397, 1073
Sau96I	GGNCC	2 cut(s)	508, 994
SchI	GAGTC	4 cut(s)	362, 398, 449, 1078
ScrFI	CCNGG	5 cut(s)	141, 267, 511, 512, 810
SduI	GDGCHC	2 cut(s)	456, 684
SfcI	CTRYAG	2 cut(s)	315, 565
SinI	GGWCC	1 cut(s)	994
SmaI	CCCGGG	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	925
SmlI	CTYRAG	2 cut(s)	455, 621
SmoI	CTYRAG	2 cut(s)	455, 621
SphI	GCATGC	1 cut(s)	170
Sse9I	AATT	5 cut(s)	93, 279, 348, 761, 799
SsiI	CCGC	2 cut(s)	874, 973
SspMI	CTAG	3 cut(s)	543, 582, 938
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	5 cut(s)	139, 265, 509, 510, 808
StyI	CCWWGG	2 cut(s)	581, 1046
TaaI	ACNGT	3 cut(s)	319, 955, 1025
TaiI	ACGT	1 cut(s)	1012
TaqI	TCGA	4 cut(s)	34, 277, 853, 1072
TasI	AATT	5 cut(s)	93, 279, 348, 761, 799
TatI	WGTACW	1 cut(s)	343
TfiI	GAWTC	4 cut(s)	124, 481, 707, 813
Tru1I	TTAA	3 cut(s)	536, 713, 884
Tru9I	TTAA	3 cut(s)	536, 713, 884
TseFI	GTSAC	2 cut(s)	106, 918
TseI	GCWGC	3 cut(s)	200, 218, 653
Tsp45I	GTSAC	2 cut(s)	106, 918
TspDTI	ATGAA	5 cut(s)	170, 793, 821, 849, 884
TspGWI	ACGGA	2 cut(s)	39, 719
TspMI	CCCGGG	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	994
VspI	ATTAAT	1 cut(s)	884
XapI	RAATTY	2 cut(s)	279, 799
XceI	RCATGY	4 cut(s)	170, 200, 632, 874
XmaI	CCCGGG	1 cut(s)	510
XmaJI	CCTAGG	1 cut(s)	581
XspI	CTAG	3 cut(s)	543, 582, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.