Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007672

Physical Location & Seq

Genomic Coordinates Reverse (-)

9806896 .. 9810663

Gene Structure 3768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG067100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCGTTGTCAACAGGCCTCATCACCTCCACCACCTTCCTCTCCGGCGAGACGTCGTCGCTGGCCAAGCCTTCTCTCGCCGCCGCCGCCTCCTCCTCCTCCGCTCTCAGGTTCGCCTACCCCAACTTCCCTGCTAACCTCCGTATGCCGCGCACCCCAACCCCCCTCGCCGCCGTGTCGAAGCAGGCCGCCACCACCCCACGGGAGCCACGTGGCATCATGAAGCCGCGCAAGGTGTCGCCGGAGATGCAGGCCCTTGTCGGCGTCCCTGAGATTTCTCGCACCCAAGCTCTGAAGCTGATTTGGGCCCACATTAAGGGCAACAATCTTCAGGACCCTGAAAACAAGAAGATCATTGTTTGTGATGACAAGCTGAAGAAGATTTTTGCAGGGAAGGACCGTGTTGGCTTTCTTGAGGTTGCTGGACTGATTACCCCGCATTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIB

Protein Analysis

149

Amino Acids

16.02

Weight (kDa)

10.2

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	75 - 148	7.7e-29	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14880 AT2G14880 AT2G14880 AT4G34290
fragaria_vesca	FvH4_2g04600
malus_domestica	MD13G1205100.v1.1
prunus_persica	Prupe.8G139100_v2.0.a1
pyrus_communis	pycom05g09340 pycom10g08680
rosa_chinensis	RchiOBHm_Chr6g0254211
rosa_laevigata	RLG00000014934
rosa_multiflora	Rmu_sc0000010.1_g000013 Rmu_sc0003711.1_g000013 Rmu_sc0003711.1_g000014 Rmu_sc0005652.1_g000031
rosa_roxburghii	Rroxscaffold_7G00211060
rosa_rugosa	Rorug05G0089400 Rorug05G0550700 Rorug05G0551000
rosa_samantha	Rh6AG067100 Rh6BG060300 Rh6CG060200 Rh6DG057200
rosa_wichuraiana	Rw6G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	104
AccII	CGCG	2 cut(s)	151, 229
AciI	CCGC	9 cut(s)	81, 84, 87, 102, 149, 171, 189, 227, 437
AcoI	YGGCCR	1 cut(s)	63
AcuI	CTGAAG	3 cut(s)	314, 314, 395
AcvI	CACGTG	1 cut(s)	212
AcyI	GRCGYC	2 cut(s)	53, 264
AfiI	CCNNNNNNNGG	3 cut(s)	108, 201, 316
AluBI	AGCT	3 cut(s)	290, 298, 373
AluI	AGCT	3 cut(s)	290, 298, 373
Alw26I	GTCTC	1 cut(s)	44
AoxI	GGCC	5 cut(s)	16, 63, 186, 252, 306
ApaI	GGGCCC	1 cut(s)	310
AspLEI	GCGC	2 cut(s)	153, 231
AspS9I	GGNCC	5 cut(s)	253, 306, 307, 334, 397
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	334, 397
BaeGI	GKGCMC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	310
BbrPI	CACGTG	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	44
BisI	GCNGC	7 cut(s)	81, 84, 87, 149, 171, 189, 227
BlsI	GCNGC	7 cut(s)	82, 85, 88, 150, 172, 190, 228
Bme18I	GGWCC	2 cut(s)	334, 397
BmgT120I	GGNCC	5 cut(s)	253, 306, 307, 334, 397
BmiI	GGNNCC	3 cut(s)	207, 308, 336
BmsI	GCATC	2 cut(s)	225, 237
BpuEI	CTTGAG	1 cut(s)	434
BsaAI	YACGTR	1 cut(s)	212
BsaHI	GRCGYC	2 cut(s)	53, 264
BsaJI	CCNNGG	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 201, 316
BseDI	CCNNGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	3 cut(s)	108, 201, 316
BseMII	CTCAG	2 cut(s)	121, 261
BseRI	GAGGAG	3 cut(s)	82, 85, 88
BseSI	GKGCMC	1 cut(s)	310
Bsh1236I	CGCG	2 cut(s)	151, 229
BshFI	GGCC	5 cut(s)	18, 65, 188, 254, 308
BsiSI	CCGG	2 cut(s)	45, 242
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	3 cut(s)	108, 201, 316
BsmAI	GTCTC	1 cut(s)	44
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	5 cut(s)	18, 65, 188, 254, 308
Bsp120I	GGGCCC	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	351
BspACI	CCGC	9 cut(s)	81, 84, 87, 102, 149, 171, 189, 227, 437
BspANI	GGCC	5 cut(s)	18, 65, 188, 254, 308
BspCNI	CTCAG	2 cut(s)	120, 262
BspFNI	CGCG	2 cut(s)	151, 229
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	3 cut(s)	207, 308, 336
BsrBI	CCGCTC	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	351
BssNI	GRCGYC	2 cut(s)	53, 264
Bst4CI	ACNGT	1 cut(s)	401
BstACI	GRCGYC	2 cut(s)	53, 264
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	3 cut(s)	63, 186, 252
BstDEI	CTNAG	2 cut(s)	107, 270
BstDSI	CCRYGG	1 cut(s)	200
BstFNI	CGCG	2 cut(s)	151, 229
BstHHI	GCGC	2 cut(s)	153, 231
BstKTI	GATC	1 cut(s)	354
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 86, 247
BstSLI	GKGCMC	1 cut(s)	310
BstUI	CGCG	2 cut(s)	151, 229
BsuRI	GGCC	5 cut(s)	18, 65, 188, 254, 308
BtgI	CCRYGG	1 cut(s)	200
Cac8I	GCNNGC	3 cut(s)	63, 186, 252
CciI	TCATGA	1 cut(s)	219
CfoI	GCGC	2 cut(s)	153, 231
Cfr13I	GGNCC	5 cut(s)	253, 306, 307, 334, 397
CseI	GACGC	1 cut(s)	253
CviAII	CATG	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	107, 270
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	63
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	334, 397
Eco57I	CTGAAG	3 cut(s)	314, 314, 395
Eco72I	CACGTG	1 cut(s)	212
EcoO109I	RGGNCCY	2 cut(s)	253, 334
EcoT38I	GRGCYC	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	1 cut(s)	223
FaiI	YATR	2 cut(s)	146, 221
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	1 cut(s)	219
FauI	CCCGC	1 cut(s)	444
Fnu4HI	GCNGC	7 cut(s)	81, 84, 87, 149, 171, 189, 227
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	7 cut(s)	81, 84, 87, 149, 171, 189, 227
GlaI	GCGC	2 cut(s)	152, 230
GluI	GCNGC	7 cut(s)	81, 84, 87, 149, 171, 189, 227
HaeIII	GGCC	5 cut(s)	18, 65, 188, 254, 308
HapII	CCGG	2 cut(s)	45, 242
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	2 cut(s)	153, 231
Hin1I	GRCGYC	2 cut(s)	53, 264
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	2 cut(s)	151, 229
HinP1I	GCGC	2 cut(s)	151, 229
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HpaII	CCGG	2 cut(s)	45, 242
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	3 cut(s)	220, 332, 413
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	2 cut(s)	58, 61
HpyAV	CCTTC	3 cut(s)	46, 81, 388
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	2 cut(s)	53, 211
HpyCH4V	TGCA	2 cut(s)	250, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 86, 247
HpyF3I	CTNAG	2 cut(s)	107, 270
HpySE526I	ACGT	2 cut(s)	53, 211
Hsp92I	GRCGYC	2 cut(s)	53, 264
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	2 cut(s)	151, 229
Kzo9I	GATC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	205
LweI	GCATC	2 cut(s)	225, 237
MaeII	ACGT	2 cut(s)	53, 211
MalI	GATC	1 cut(s)	353
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	1 cut(s)	351
MboII	GAAGA	4 cut(s)	320, 361, 388, 391
MhlI	GDGCHC	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	65
MluNI	TGGCCA	1 cut(s)	65
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	315
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	2 cut(s)	45, 242
MvnI	CGCG	2 cut(s)	151, 229
MwoI	GCNNNNNNNGC	3 cut(s)	67, 86, 247
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	3 cut(s)	207, 308, 336
PagI	TCATGA	1 cut(s)	219
PceI	AGGCCT	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PflFI	GACNNNGTC	1 cut(s)	55
PkrI	GCNGC	7 cut(s)	82, 85, 88, 150, 172, 190, 228
PmaCI	CACGTG	1 cut(s)	212
PmlI	CACGTG	1 cut(s)	212
Ppu21I	YACGTR	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	334
PspCI	CACGTG	1 cut(s)	212
PspN4I	GGNNCC	3 cut(s)	207, 308, 336
PspOMI	GGGCCC	1 cut(s)	306
PspPI	GGNCC	5 cut(s)	253, 306, 307, 334, 397
PspPPI	RGGWCCY	1 cut(s)	334
PsyI	GACNNNGTC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	7 cut(s)	81, 84, 87, 149, 171, 189, 227
Sau3AI	GATC	1 cut(s)	351
Sau96I	GGNCC	5 cut(s)	253, 306, 307, 334, 397
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	225, 237
SinI	GGWCC	2 cut(s)	334, 397
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	9 cut(s)	81, 84, 87, 102, 149, 171, 189, 227, 437
StuI	AGGCCT	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	2 cut(s)	56, 214
TaqI	TCGA	1 cut(s)	179
TauI	GCSGC	7 cut(s)	83, 86, 89, 151, 173, 191, 229
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TspDTI	ATGAA	1 cut(s)	236
TspGWI	ACGGA	1 cut(s)	131
Tth111I	GACNNNGTC	1 cut(s)	55
VpaK11BI	GGWCC	2 cut(s)	334, 397
ZraI	GACGTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.