Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005968

Physical Location & Seq

Genomic Coordinates Forward (+)

6518749 .. 6521549

Gene Structure 2801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G15050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCTGGTCTTATGAAGTTAGGATGCTTGGTCTTTGTCTTCGTGATTGCGGCCGGTCCAATCACAGCAAAGGCGGCTCTGAGCTGTGGCGAAGTTAACAGCAATTTGAAACCGTGCACTGGCTACTTGACCAATGGTGGTATCACTAGCCCAGGCCCACAGTGCTGCAATGGTGTTAGAAAGCTTAACGGCATGGTCCTTACAACCCTAGACCGTCGGCAAGCATGTCGTTGCATTAAAAATGCCGCTAGAAACGTCGGCCCTGGTCTCAACGCTGACCGTGCTGCTGGGATTCCTAGGAGATGCGGAATCAAAATACCTTACAGTACCCAAATCAGGTTCAACACCAAGTGCAACACGTACATATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006869 GO:0007275 GO:0008150 GO:0009505 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010876 GO:0016020 GO:0016043 GO:0016049 GO:0022412 GO:0022414 GO:0030154 GO:0030312 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033036 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060560 GO:0061458 GO:0071702 GO:0071840 GO:0071944 GO:0090376 GO:0090378 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

123

Amino Acids

13.0

Weight (kDa)

9.73

Isoelectric Point (pI)

18.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	15 - 109	1.4e-10	Probable lipid transfer
Tryp_alpha_amyl	PF00234	29 - 115	4.7e-15	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15050 AT2G15050 AT2G15050 AT2G38530 AT2G38540 AT3G51600 AT5G59310 AT5G59320
fragaria_vesca	FvH4_6g09990
malus_domestica	MD04G1173500.v1.1 MD12G1187000.v1.1
prunus_persica	Prupe.6G292500_v2.0.a1
pyrus_communis	pycom12g17530
rosa_chinensis	RchiOBHm_Chr3g0460661
rosa_multiflora	Rmu_co8170460.1_g000001 Rmu_sc0001256.1_g000011 Rmu_sc0011069.1_g000011
rosa_roxburghii	Rroxscaffold_6G00419320
rosa_rugosa	Rorug03G0044600 Rorug03G0044700 Rorug03G0044800 Rorug03G0044900
rosa_samantha	Rh3AG102500 Rh3BG106200 Rh3CG108100 Rh3DG107700
rosa_wichuraiana	Rw3G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	50, 74, 246, 306
AcoI	YGGCCR	1 cut(s)	51
AdeI	CACNNNGTG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	328, 362
AfiI	CCNNNNNNNGG	2 cut(s)	119, 336
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	2 cut(s)	109, 343
AjnI	CCWGG	2 cut(s)	151, 262
AluBI	AGCT	2 cut(s)	84, 184
AluI	AGCT	2 cut(s)	84, 184
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	272
Alw44I	GTGCAC	1 cut(s)	115
AoxI	GGCC	3 cut(s)	51, 154, 259
ApaLI	GTGCAC	1 cut(s)	115
ApeKI	GCWGC	2 cut(s)	165, 284
AspA2I	CCTAGG	1 cut(s)	296
AspS9I	GGNCC	4 cut(s)	56, 155, 196, 260
AvaII	GGWCC	2 cut(s)	56, 196
AvrII	CCTAGG	1 cut(s)	296
BaeGI	GKGCMC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	152, 271
BceAI	ACGGC	1 cut(s)	205
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	2 cut(s)	153, 264
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	4 cut(s)	147, 209, 249, 297
BisI	GCNGC	5 cut(s)	51, 75, 166, 246, 285
BlnI	CCTAGG	1 cut(s)	296
BlsI	GCNGC	5 cut(s)	52, 76, 167, 247, 286
Bme1390I	CCNGG	2 cut(s)	153, 264
Bme18I	GGWCC	2 cut(s)	56, 196
BmgT120I	GGNCC	4 cut(s)	56, 155, 196, 260
BmrFI	CCNGG	2 cut(s)	153, 264
BmsI	GCATC	2 cut(s)	14, 293
BpiI	GAAGAC	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	151, 262, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 336
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	153, 264
BseDI	CCNNGG	3 cut(s)	151, 262, 296
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	119, 336
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	124
BseSI	GKGCMC	1 cut(s)	119
BseX3I	CGGCCG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	152, 271
BseYI	CCCAGC	1 cut(s)	287
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	53, 156, 261
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	119, 336
BsmAI	GTCTC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	53, 156, 261
Bso31I	GGTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	119
BspACI	CCGC	4 cut(s)	50, 74, 246, 306
BspANI	GGCC	3 cut(s)	53, 156, 261
BspCNI	CTCAG	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	3 cut(s)	151, 262, 296
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	2 cut(s)	153, 264
Bst4CI	ACNGT	5 cut(s)	114, 162, 215, 281, 326
BstBAI	YACGTR	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	272
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 162, 281
BstNI	CCWGG	2 cut(s)	153, 264
BstNSI	RCATGY	1 cut(s)	228
BstSCI	CCNGG	2 cut(s)	151, 262
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	152, 271
BstV2I	GAAGAC	1 cut(s)	31
BstZI	CGGCCG	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	53, 156, 261
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	117, 167
Cac8I	GCNNGC	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	4 cut(s)	56, 155, 196, 260
Csp6I	GTAC	2 cut(s)	327, 361
CviAII	CATG	2 cut(s)	193, 225
CviJI	RGCY	9 cut(s)	5, 53, 77, 84, 123, 150, 156, 184, 261
CviKI_1	RGCY	9 cut(s)	5, 53, 77, 84, 123, 150, 156, 184, 261
CviQI	GTAC	2 cut(s)	327, 361
DdeI	CTNAG	1 cut(s)	80
DraIII	CACNNNGTG	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	51
EagI	CGGCCG	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	296
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	56, 196
Eco52I	CGGCCG	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	151, 262
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	2 cut(s)	196, 228
FaiI	YATR	5 cut(s)	14, 194, 226, 365, 367
FatI	CATG	2 cut(s)	192, 224
FauNDI	CATATG	1 cut(s)	365
Fnu4HI	GCNGC	5 cut(s)	51, 75, 166, 246, 285
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	5 cut(s)	51, 75, 166, 246, 285
FspBI	CTAG	4 cut(s)	147, 209, 249, 297
GluI	GCNGC	5 cut(s)	51, 75, 166, 246, 285
GsaI	CCCAGC	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	53, 156, 261
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	2 cut(s)	196, 228
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	2 cut(s)	292, 309
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	54
Hpy166II	GTNNAC	2 cut(s)	97, 117
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	2 cut(s)	97, 117
Hpy99I	CGWCG	2 cut(s)	219, 260
HpyCH4III	ACNGT	5 cut(s)	114, 162, 215, 281, 326
HpyCH4IV	ACGT	2 cut(s)	255, 359
HpyCH4V	TGCA	4 cut(s)	117, 168, 234, 354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 162, 281
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	2 cut(s)	255, 359
Hsp92II	CATG	2 cut(s)	196, 228
KspAI	GTTAAC	1 cut(s)	97
LpnPI	CCDG	8 cut(s)	67, 105, 138, 165, 249, 273, 276, 322
Lsp1109I	GCAGC	2 cut(s)	152, 271
LweI	GCATC	2 cut(s)	14, 293
MaeI	CTAG	4 cut(s)	147, 209, 249, 297
MaeII	ACGT	2 cut(s)	255, 359
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	1 cut(s)	103
MseI	TTAA	4 cut(s)	96, 186, 237, 370
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	153, 264
MvaI	CCWGG	2 cut(s)	153, 264
MwoI	GCNNNNNNNGC	3 cut(s)	74, 162, 281
NdeI	CATATG	1 cut(s)	365
NlaIII	CATG	2 cut(s)	196, 228
NspI	RCATGY	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	292, 309
PkrI	GCNGC	5 cut(s)	52, 76, 167, 247, 286
Ppu21I	YACGTR	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	151, 262
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	2 cut(s)	151, 262
PspPI	GGNCC	4 cut(s)	56, 155, 196, 260
RsaI	GTAC	2 cut(s)	328, 362
RsaNI	GTAC	2 cut(s)	327, 361
SaqAI	TTAA	4 cut(s)	96, 186, 237, 370
SatI	GCNGC	5 cut(s)	51, 75, 166, 246, 285
Sau96I	GGNCC	4 cut(s)	56, 155, 196, 260
ScrFI	CCNGG	2 cut(s)	153, 264
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	6 cut(s)	86, 186, 258, 322, 341, 362
SfaNI	GCATC	2 cut(s)	14, 293
SinI	GGWCC	2 cut(s)	56, 196
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	4 cut(s)	50, 74, 246, 306
SspMI	CTAG	4 cut(s)	147, 209, 249, 297
StyD4I	CCNGG	2 cut(s)	151, 262
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	5 cut(s)	114, 162, 215, 281, 326
TaiI	ACGT	2 cut(s)	258, 362
TasI	AATT	1 cut(s)	103
TauI	GCSGC	3 cut(s)	53, 77, 248
TfiI	GAWTC	2 cut(s)	292, 309
Tru1I	TTAA	4 cut(s)	96, 186, 237, 370
Tru9I	TTAA	4 cut(s)	96, 186, 237, 370
TscAI	CASTG	2 cut(s)	124, 167
TseI	GCWGC	2 cut(s)	165, 284
TspDTI	ATGAA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	124, 167
VneI	GTGCAC	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	56, 196
XceI	RCATGY	1 cut(s)	228
XmaJI	CCTAGG	1 cut(s)	296
XspI	CTAG	4 cut(s)	147, 209, 249, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.