Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005968

Physical Location & Seq

Genomic Coordinates Forward (+)

16130290 .. 16131240

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCTGGAGTGATGAAGTTGGCATGCTTGCTCTTGGCCTGCATGATTGTGGCCGGTCCAATCACATCGAACGCTGCGCTAAGCTGTGGCTCAGTTAACAGCAACTTGGCAGCGTGCATTGGCTACGTGCTCCAAGGTGGTGTCATTCCCCCAGCGTGTTGCTCCGGCGTTAAAAACCTCAACAGCATAGCCAAGACGACCCCAGACCGTCAGCAAGCTTGCAATTGCATTCAAGGTGCCGCTAGAGCCTTAGGCTCTGGTCTCAACGCTGGCCGTGCAGCTGGAATTCCTAAGGCATGTGGAGTCAATATTCCTTACAAAATCAGCACCAGCACCAACTGCAAAACCGTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010035 GO:0010154 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016049 GO:0019222 GO:0022412 GO:0022414 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033036 GO:0040007 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0060560 GO:0061024 GO:0061458 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090376 GO:0090378 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

118

Amino Acids

11.75

Weight (kDa)

9.3

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tryp_alpha_amyl	PF00234	29 - 114	1.9e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15050 AT2G15050 AT2G15050 AT2G38530 AT2G38540 AT3G51600 AT5G59310 AT5G59320
fragaria_vesca	FvH4_6g09990
malus_domestica	MD04G1173500.v1.1 MD12G1187000.v1.1
prunus_persica	Prupe.6G292500_v2.0.a1
pyrus_communis	pycom12g17530
rosa_chinensis	RchiOBHm_Chr3g0460661
rosa_multiflora	Rmu_co8170460.1_g000001 Rmu_sc0001256.1_g000011 Rmu_sc0011069.1_g000011
rosa_roxburghii	Rroxscaffold_6G00419320
rosa_rugosa	Rorug03G0044600 Rorug03G0044700 Rorug03G0044800 Rorug03G0044900
rosa_samantha	Rh3AG102500 Rh3BG106200 Rh3CG108100 Rh3DG107700
rosa_wichuraiana	Rw3G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AciI	CCGC	1 cut(s)	240
AcoI	YGGCCR	2 cut(s)	51, 271
AcsI	RAATTY	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	233
AluBI	AGCT	3 cut(s)	84, 218, 281
AluI	AGCT	3 cut(s)	84, 218, 281
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	266
AoxI	GGCC	3 cut(s)	36, 51, 271
ApeKI	GCWGC	3 cut(s)	74, 110, 278
ApoI	RAATTY	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	56
AxyI	CCTNAGG	2 cut(s)	250, 291
BanI	GGYRCC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	61, 122, 290
BceAI	ACGGC	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	243
BisI	GCNGC	4 cut(s)	75, 111, 240, 279
BlpI	GCTNAGC	1 cut(s)	80
BlsI	GCNGC	4 cut(s)	76, 112, 241, 280
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	27
Bpu1102I	GCTNAGC	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	133
Bse118I	RCCGGY	1 cut(s)	53
Bse21I	CCTNAGG	2 cut(s)	250, 291
BseDI	CCNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	105
BseXI	GCAGC	3 cut(s)	61, 122, 290
BseYI	CCCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	3 cut(s)	38, 53, 273
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	54, 165
BsmAI	GTCTC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	3 cut(s)	38, 53, 273
Bso31I	GGTCTC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp1720I	GCTNAGC	1 cut(s)	80
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	3 cut(s)	38, 53, 273
BspCNI	CTCAG	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	133
Bst4CI	ACNGT	2 cut(s)	209, 349
BstAPI	GCANNNNNTGC	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	7 cut(s)	25, 29, 40, 115, 216, 220, 271
BstDEI	CTNAG	4 cut(s)	80, 91, 250, 291
BstHHI	GCGC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 275, 339
BstNSI	RCATGY	2 cut(s)	27, 300
BstV1I	GCAGC	3 cut(s)	61, 122, 290
Bsu36I	CCTNAGG	2 cut(s)	250, 291
BsuRI	GGCC	3 cut(s)	38, 53, 273
Cac8I	GCNNGC	7 cut(s)	25, 29, 40, 115, 216, 220, 271
CfoI	GCGC	1 cut(s)	79
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	56
CviAII	CATG	3 cut(s)	24, 43, 297
DdeI	CTNAG	4 cut(s)	80, 91, 250, 291
EaeI	YGGCCR	2 cut(s)	51, 271
Eco130I	CCWWGG	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	56
Eco81I	CCTNAGG	2 cut(s)	250, 291
EcoRI	GAATTC	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	3 cut(s)	27, 46, 300
FaiI	YATR	4 cut(s)	25, 44, 188, 298
FatI	CATG	3 cut(s)	23, 42, 296
Fnu4HI	GCNGC	4 cut(s)	75, 111, 240, 279
Fsp4HI	GCNGC	4 cut(s)	75, 111, 240, 279
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	4 cut(s)	75, 111, 240, 279
GsaI	CCCAGC	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	38, 53, 273
HapII	CCGG	2 cut(s)	54, 165
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	27, 46, 300
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	1 cut(s)	303
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	2 cut(s)	54, 165
Hpy166II	GTNNAC	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	97
HpyCH4III	ACNGT	2 cut(s)	209, 349
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	6 cut(s)	42, 117, 222, 228, 278, 342
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 275, 339
HpyF3I	CTNAG	4 cut(s)	80, 91, 250, 291
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	27, 46, 300
HspAI	GCGC	1 cut(s)	77
KspAI	GTTAAC	1 cut(s)	97
LmnI	GCTCC	2 cut(s)	135, 167
LpnPI	CCDG	9 cut(s)	52, 67, 165, 178, 216, 243, 255, 267, 343
Lsp1109I	GCAGC	3 cut(s)	61, 122, 290
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	126
MfeI	CAATTG	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	2 cut(s)	223, 285
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	2 cut(s)	188, 345
MseI	TTAA	2 cut(s)	96, 171
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	2 cut(s)	54, 165
MunI	CAATTG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	245, 275, 339
NlaIII	CATG	3 cut(s)	27, 46, 300
NlaIV	GGNNCC	1 cut(s)	238
NspI	RCATGY	2 cut(s)	27, 300
PaeI	GCATGC	1 cut(s)	27
PctI	GAATGC	1 cut(s)	228
PkrI	GCNGC	4 cut(s)	76, 112, 241, 280
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
Ppu21I	YACGTR	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	96, 171
SatI	GCNGC	4 cut(s)	75, 111, 240, 279
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	8 cut(s)	86, 129, 139, 180, 220, 238, 283, 356
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	47
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	2 cut(s)	223, 285
SsiI	CCGC	1 cut(s)	240
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	209, 349
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	68
TasI	AATT	2 cut(s)	223, 285
TauI	GCSGC	1 cut(s)	242
Tru1I	TTAA	2 cut(s)	96, 171
Tru9I	TTAA	2 cut(s)	96, 171
TseI	GCWGC	3 cut(s)	74, 110, 278
TspDTI	ATGAA	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	2 cut(s)	27, 300
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.