Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005968

Physical Location & Seq

Genomic Coordinates Reverse (-)

23924990 .. 23925957

Gene Structure 968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTTTCGCTTTGAGGTTCTTCACATGCTTTGTTTTGACAGTGTTCATCGTTGCATCAGTGGATGCAGCAATAACATGTGGCACAGTGGCAAGTAGCTTGAGTCCATGTCTAGGCTACCTATCAAAGGGTGGGGTGGTGCCACCTCCGTGCTGTGCAGGAGTCAAAAAGTTGAACGGTATGGCTCAAACCACACCCGACCGCCAACAAGCATGCAGATGCTTACAGTCCGCTGCAAAAGGGGTTAATCCAAGTCTAGCCTCTGGCCTTCCTGGAAAGTGCGGTGTTAGCATCCCCTATCCCATCTCCACGAGCACCAACTGCGCCACCATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006810 GO:0006869 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0010876 GO:0016020 GO:0030312 GO:0033036 GO:0033993 GO:0042221 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

112

Amino Acids

11.41

Weight (kDa)

9.11

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	17 - 100	1.8e-06	Probable lipid transfer
Tryp_alpha_amyl	PF00234	27 - 108	6.8e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15050 AT2G15050 AT2G15050 AT2G38530 AT2G38540 AT3G51600 AT5G59310 AT5G59320
fragaria_vesca	FvH4_6g09990
malus_domestica	MD04G1173500.v1.1 MD12G1187000.v1.1
prunus_persica	Prupe.6G292500_v2.0.a1
pyrus_communis	pycom12g17530
rosa_chinensis	RchiOBHm_Chr3g0460661
rosa_multiflora	Rmu_co8170460.1_g000001 Rmu_sc0001256.1_g000011 Rmu_sc0011069.1_g000011
rosa_roxburghii	Rroxscaffold_6G00419320
rosa_rugosa	Rorug03G0044600 Rorug03G0044700 Rorug03G0044800 Rorug03G0044900
rosa_samantha	Rh3AG102500 Rh3BG106200 Rh3CG108100 Rh3DG107700
rosa_wichuraiana	Rw3G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	139
AciI	CCGC	3 cut(s)	202, 231, 282
AfiI	CCNNNNNNNGG	2 cut(s)	113, 127
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	271
AleI	CACNNNNGTG	1 cut(s)	148
AluBI	AGCT	1 cut(s)	99
AluI	AGCT	1 cut(s)	99
Alw21I	GWGCWC	1 cut(s)	317
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	2 cut(s)	68, 233
AspLEI	GCGC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	139
BauI	CACGAG	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	80, 220
BccI	CCATC	2 cut(s)	311, 338
BciT130I	CCWGG	1 cut(s)	273
BfaI	CTAG	2 cut(s)	113, 257
BisI	GCNGC	2 cut(s)	69, 234
BlsI	GCNGC	2 cut(s)	70, 235
Bme1390I	CCNGG	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	4 cut(s)	55, 65, 209, 300
BpuEI	CTTGAG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 127
BseBI	CCWGG	1 cut(s)	273
BseGI	GGATG	2 cut(s)	70, 291
BseLI	CCNNNNNNNGG	2 cut(s)	113, 127
BseXI	GCAGC	2 cut(s)	80, 220
BsgI	GTGCAG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	139
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	317
BslI	CCNNNNNNNGG	2 cut(s)	113, 127
BsnI	GGCC	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	317
BspACI	CCGC	3 cut(s)	202, 231, 282
BspANI	GGCC	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	139
BssSI	CACGAG	1 cut(s)	310
Bst2BI	CACGAG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	4 cut(s)	43, 88, 179, 228
BstAPI	GCANNNNNTGC	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	214
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	70, 291
BstHHI	GCGC	1 cut(s)	326
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 321
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	3 cut(s)	30, 81, 216
BstSCI	CCNGG	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	80, 220
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	70, 291
BtsIMutI	CAGTG	3 cut(s)	48, 66, 93
Cac8I	GCNNGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	326
CviAII	CATG	4 cut(s)	27, 78, 108, 213
CviJI	RGCY	6 cut(s)	5, 99, 117, 185, 260, 267
CviKI_1	RGCY	6 cut(s)	5, 99, 117, 185, 260, 267
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	4 cut(s)	30, 81, 111, 216
FaiI	YATR	5 cut(s)	28, 79, 109, 182, 214
FatI	CATG	4 cut(s)	26, 77, 107, 212
Fnu4HI	GCNGC	2 cut(s)	69, 234
FokI	GGATG	2 cut(s)	77, 278
Fsp4HI	GCNGC	2 cut(s)	69, 234
FspBI	CTAG	2 cut(s)	113, 257
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	2 cut(s)	69, 234
HaeIII	GGCC	1 cut(s)	267
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	4 cut(s)	30, 81, 111, 216
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HinfI	GANTC	2 cut(s)	103, 162
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	4 cut(s)	43, 88, 179, 228
HpyCH4V	TGCA	5 cut(s)	56, 68, 158, 216, 236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 321
Hsp92II	CATG	4 cut(s)	30, 81, 111, 216
HspAI	GCGC	1 cut(s)	324
LpnPI	CCDG	4 cut(s)	144, 249, 258, 285
Lsp1109I	GCAGC	2 cut(s)	80, 220
LweI	GCATC	4 cut(s)	55, 65, 209, 300
MaeI	CTAG	2 cut(s)	113, 257
MboII	GAAGA	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	317
MlyI	GAGTC	2 cut(s)	112, 171
MnlI	CCTC	3 cut(s)	9, 156, 271
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	2 cut(s)	148, 217
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	288, 321
NlaIII	CATG	4 cut(s)	30, 81, 111, 216
NlaIV	GGNNCC	1 cut(s)	141
NspI	RCATGY	3 cut(s)	30, 81, 216
OliI	CACNNNNGTG	1 cut(s)	148
PaeI	GCATGC	1 cut(s)	216
PciI	ACATGT	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	70, 235
PleI	GAGTC	2 cut(s)	111, 170
PpsI	GAGTC	2 cut(s)	111, 170
PscI	ACATGT	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	141
RseI	CAYNNNNRTG	2 cut(s)	148, 217
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	69, 234
SchI	GAGTC	2 cut(s)	112, 171
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	4 cut(s)	20, 101, 123, 148
SfaNI	GCATC	4 cut(s)	55, 65, 209, 300
SmiMI	CAYNNNNRTG	2 cut(s)	148, 217
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
SphI	GCATGC	1 cut(s)	216
SsiI	CCGC	3 cut(s)	202, 231, 282
SspMI	CTAG	2 cut(s)	113, 257
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	4 cut(s)	43, 88, 179, 228
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	3 cut(s)	48, 66, 93
TseI	GCWGC	2 cut(s)	68, 233
TspDTI	ATGAA	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	3 cut(s)	48, 66, 93
XagI	CCTNNNNNAGG	1 cut(s)	125
XceI	RCATGY	3 cut(s)	30, 81, 216
XspI	CTAG	2 cut(s)	113, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.