FvH4_6g09990

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
5931924 .. 5933005
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09990.t1

Sequence Viewer

Length: 342 bp
ATGGCCGGAACCCTAGCTAAGCTTTCATGTGTGCTCGTGATGTGCATGGTGGTCGCCGAAGCAGCCATGACATGCAACCAGATCCAGGGTGGGATGGCACCGTGCCTTGGCTACCTCACCAAAGGTGGCACCCCCACCACGGGTTGCTGTACCAACCTGAGAAACATGGTCAACTCGGCGACGTCCACCGTTGACCGCCAGAATGCTTGCAAGTGCCTGAAAGCAGCTGCTGCCAAATTTCAAACCATCAACCCAGACAACGCCGCTAAGCTCCCTTCCTACTGCAATGTCAACATTCCTTACAAGATCAGCACCAACACCAACTGCGACAGCGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

11.82

Weight (kDa)

8.87

Isoelectric Point (pI)

29.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 17 - 101 2.4e-07 Probable lipid transfer
Tryp_alpha_amyl PF00234 25 - 109 5.4e-14 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 185
AccB1I GGYRCC 2 cut(s) 97, 128
AciI CCGC 2 cut(s) 196, 264
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 182
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 4 cut(s) 85, 107, 139, 140
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 4 cut(s) 17, 22, 227, 271
AluI AGCT 4 cut(s) 17, 22, 227, 271
Alw21I GWGCWC 1 cut(s) 36
AlwI GGATC 1 cut(s) 76
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 62, 224, 227, 230
ApoI RAATTY 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 109
BanI GGYRCC 2 cut(s) 97, 128
BauI CACGAG 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 4 cut(s) 74, 214, 217, 236
BccI CCATC 2 cut(s) 88, 254
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 1 cut(s) 86
BfaI CTAG 1 cut(s) 14
BisI GCNGC 5 cut(s) 63, 225, 228, 231, 264
BlpI GCTNAGC 2 cut(s) 18, 267
BlsI GCNGC 5 cut(s) 64, 226, 229, 232, 265
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 3 cut(s) 10, 99, 130
BmrFI CCNGG 1 cut(s) 86
Bpu1102I GCTNAGC 2 cut(s) 18, 267
BsaHI GRCGYC 1 cut(s) 182
BsaJI CCNNGG 3 cut(s) 85, 106, 138
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 107, 139, 140
Bse3DI GCAATG 1 cut(s) 292
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 3 cut(s) 85, 106, 138
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 4 cut(s) 85, 107, 139, 140
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 149
BseXI GCAGC 4 cut(s) 74, 214, 217, 236
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 97, 128
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 4 cut(s) 85, 107, 139, 140
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 2 cut(s) 81, 306
Bsp1720I GCTNAGC 2 cut(s) 18, 267
BspACI CCGC 2 cut(s) 196, 264
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 3 cut(s) 10, 99, 130
BspPI GGATC 1 cut(s) 76
BspT107I GGYRCC 2 cut(s) 97, 128
BsrDI GCAATG 1 cut(s) 292
BssECI CCNNGG 3 cut(s) 85, 106, 138
BssMI GATC 2 cut(s) 81, 306
BssNI GRCGYC 1 cut(s) 182
BssSI CACGAG 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 106
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 102, 190
BstACI GRCGYC 1 cut(s) 182
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 3 cut(s) 18, 158, 267
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 99
BstKTI GATC 2 cut(s) 84, 309
BstMBI GATC 2 cut(s) 81, 306
BstMWI GCNNNNNNNGC 2 cut(s) 62, 230
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 84
BstV1I GCAGC 4 cut(s) 74, 214, 217, 236
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 208
CaiI CAGNNNCTG 1 cut(s) 230
Csp6I GTAC 1 cut(s) 150
CviAII CATG 5 cut(s) 27, 46, 67, 72, 166
CviJI RGCY 7 cut(s) 5, 17, 22, 65, 111, 227, 271
CviKI_1 RGCY 7 cut(s) 5, 17, 22, 65, 111, 227, 271
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 3 cut(s) 18, 158, 267
DpnI GATC 2 cut(s) 83, 308
DpnII GATC 2 cut(s) 81, 306
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 5 cut(s) 30, 49, 70, 75, 169
FaiI YATR 5 cut(s) 28, 47, 68, 73, 167
FatI CATG 5 cut(s) 26, 45, 66, 71, 165
Fnu4HI GCNGC 5 cut(s) 63, 225, 228, 231, 264
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 5 cut(s) 63, 225, 228, 231, 264
FspBI CTAG 1 cut(s) 14
GluI GCNGC 5 cut(s) 63, 225, 228, 231, 264
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 5 cut(s) 30, 49, 70, 75, 169
HincII GTYRAC 3 cut(s) 172, 193, 292
HindII GTYRAC 3 cut(s) 172, 193, 292
HindIII AAGCTT 1 cut(s) 20
HpaII CCGG 1 cut(s) 6
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 4 cut(s) 172, 186, 193, 292
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 4 cut(s) 172, 186, 193, 292
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 2 cut(s) 102, 190
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 4 cut(s) 45, 75, 210, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 230
HpyF3I CTNAG 3 cut(s) 18, 158, 267
HpySE526I ACGT 1 cut(s) 182
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 5 cut(s) 30, 49, 70, 75, 169
Kzo9I GATC 2 cut(s) 81, 306
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 8 cut(s) 19, 71, 92, 98, 170, 212, 230, 267
Lsp1109I GCAGC 4 cut(s) 74, 214, 217, 236
MaeI CTAG 1 cut(s) 14
MaeII ACGT 1 cut(s) 182
MalI GATC 2 cut(s) 83, 308
MboI GATC 2 cut(s) 81, 306
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 1 cut(s) 236
MnlI CCTC 1 cut(s) 125
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 62, 230
NdeII GATC 2 cut(s) 81, 306
NlaIII CATG 5 cut(s) 30, 49, 70, 75, 169
NlaIV GGNNCC 3 cut(s) 10, 99, 130
NmeAIII GCCGAG 1 cut(s) 155
NspI RCATGY 1 cut(s) 75
PctI GAATGC 1 cut(s) 208
PkrI GCNGC 5 cut(s) 64, 226, 229, 232, 265
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 3 cut(s) 10, 99, 130
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SatI GCNGC 5 cut(s) 63, 225, 228, 231, 264
Sau3AI GATC 2 cut(s) 81, 306
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 36
SetI ASST 8 cut(s) 19, 24, 117, 127, 159, 185, 229, 273
Sse9I AATT 1 cut(s) 236
SsiI CCGC 2 cut(s) 196, 264
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 2 cut(s) 102, 190
TaiI ACGT 1 cut(s) 185
TasI AATT 1 cut(s) 236
TauI GCSGC 1 cut(s) 266
TseI GCWGC 4 cut(s) 62, 224, 227, 230
TspDTI ATGAA 1 cut(s) 15
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 75
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XspI CTAG 1 cut(s) 14
ZraI GACGTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.