Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005968

Physical Location & Seq

Genomic Coordinates Reverse (-)

19138338 .. 19139423

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAGGGACTCTTGAAGTTGTCAACTTTGGTGATTGTGTGCATGTTAGTGACCGCTCCAATGGCGTCCGAGGCAGCAATCTCGTGCGGCGCAGTCACCGGCAGCTTAGGTCAATGCTATAACTACTTGACCCGAGGCGGTTTCATTCCTAGAGGGTGTTGCTCTGGCGTTCAGAGGCTCAACAGCTTGGCTCGTACCACCCGTGACCGCCAACAAGCTTGTCGTTGTATCCAGGGAGCAGCGAGAGCCTTGGGTTCTCGACTTAACGCTGGTCGTGCTGCTCGTCTCCCTGGTGCTTGCCGTGTTAGGATCTCTTACCCCATCAGTGCCAGAACCAACTGTAACACCGTCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010035 GO:0010154 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016049 GO:0019222 GO:0022412 GO:0022414 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033036 GO:0040007 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0060560 GO:0061024 GO:0061458 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090376 GO:0090378 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

118

Amino Acids

12.49

Weight (kDa)

10.43

Isoelectric Point (pI)

22.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	13 - 105	5.3e-06	Probable lipid transfer
Tryp_alpha_amyl	PF00234	29 - 114	4.9e-13	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15050 AT2G15050 AT2G15050 AT2G38530 AT2G38540 AT3G51600 AT5G59310 AT5G59320
fragaria_vesca	FvH4_6g09990
malus_domestica	MD04G1173500.v1.1 MD12G1187000.v1.1
prunus_persica	Prupe.6G292500_v2.0.a1
pyrus_communis	pycom12g17530
rosa_chinensis	RchiOBHm_Chr3g0460661
rosa_multiflora	Rmu_co8170460.1_g000001 Rmu_sc0001256.1_g000011 Rmu_sc0011069.1_g000011
rosa_roxburghii	Rroxscaffold_6G00419320
rosa_rugosa	Rorug03G0044600 Rorug03G0044700 Rorug03G0044800 Rorug03G0044900
rosa_samantha	Rh3AG102500 Rh3BG106200 Rh3CG108100 Rh3DG107700
rosa_wichuraiana	Rw3G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	56
AciI	CCGC	4 cut(s)	54, 87, 138, 208
AclWI	GGATC	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	2 cut(s)	231, 289
AluBI	AGCT	3 cut(s)	105, 186, 218
AluI	AGCT	3 cut(s)	105, 186, 218
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	132
ApeKI	GCWGC	4 cut(s)	74, 102, 239, 278
AspLEI	GCGC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	43, 88
AvaI	CYCGRG	1 cut(s)	132
BauI	CACGAG	1 cut(s)	82
BbvI	GCAGC	4 cut(s)	86, 114, 251, 265
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	285
BcgI	CGANNNNNNTGC	2 cut(s)	63, 97
BciT130I	CCWGG	2 cut(s)	233, 291
BciVI	GTATCC	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	239
BisI	GCNGC	5 cut(s)	75, 88, 103, 240, 279
BlsI	GCNGC	5 cut(s)	76, 89, 104, 241, 280
Bme1390I	CCNGG	2 cut(s)	233, 291
BmeT110I	CYCGRG	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	233, 291
Bpu10I	CCTNAGC	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	5 cut(s)	69, 133, 232, 249, 289
Bse118I	RCCGGY	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	233, 291
BseDI	CCNNGG	5 cut(s)	69, 133, 232, 249, 289
BseXI	GCAGC	4 cut(s)	86, 114, 251, 265
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	290
BsmBI	CGTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	21
BsoBI	CYCGRG	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	309
BspACI	CCGC	4 cut(s)	54, 87, 138, 208
BspPI	GGATC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	5 cut(s)	69, 133, 232, 249, 289
BssMI	GATC	1 cut(s)	309
BssNI	GRCGYC	1 cut(s)	65
BssSI	CACGAG	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	82
Bst2UI	CCWGG	2 cut(s)	233, 291
Bst4CI	ACNGT	2 cut(s)	341, 349
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 71, 245, 275
BstNI	CCWGG	2 cut(s)	233, 291
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	2 cut(s)	231, 289
BstV1I	GCAGC	4 cut(s)	86, 114, 251, 265
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	298
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	98
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	6 cut(s)	105, 178, 186, 191, 218, 248
CviKI_1	RGCY	6 cut(s)	105, 178, 186, 191, 218, 248
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	132
EcoRII	CCWGG	2 cut(s)	231, 289
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	290
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	44, 120
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	5 cut(s)	75, 88, 103, 240, 279
Fsp4HI	GCNGC	5 cut(s)	75, 88, 103, 240, 279
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	5 cut(s)	75, 88, 103, 240, 279
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	1 cut(s)	54
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	2 cut(s)	43, 88
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	2 cut(s)	70, 174
Hpy188III	TCNNGA	2 cut(s)	13, 258
Hpy8I	GTNNAC	1 cut(s)	24
HpyCH4III	ACNGT	2 cut(s)	341, 349
HpyCH4V	TGCA	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 71, 245, 275
HpyF3I	CTNAG	1 cut(s)	106
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	309
LmnI	GCTCC	2 cut(s)	61, 236
LpnPI	CCDG	9 cut(s)	112, 150, 218, 245, 255, 276, 303, 337, 343
Lsp1109I	GCAGC	4 cut(s)	86, 114, 251, 265
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	4 cut(s)	49, 94, 203, 341
MalI	GATC	1 cut(s)	311
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	1 cut(s)	309
MflI	RGATCY	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	3
MnlI	CCTC	4 cut(s)	64, 128, 146, 168
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	233, 291
MvaI	CCWGG	2 cut(s)	233, 291
MwoI	GCNNNNNNNGC	4 cut(s)	62, 71, 245, 275
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	1 cut(s)	46
NmuCI	GTSAC	3 cut(s)	49, 94, 203
NspI	RCATGY	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	2 cut(s)	199, 280
PkrI	GCNGC	5 cut(s)	76, 89, 104, 241, 280
PleI	GAGTC	1 cut(s)	3
PpsI	GAGTC	1 cut(s)	3
Psp6I	CCWGG	2 cut(s)	231, 289
PspGI	CCWGG	2 cut(s)	231, 289
PsuI	RGATCY	1 cut(s)	309
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	5 cut(s)	75, 88, 103, 240, 279
Sau3AI	GATC	1 cut(s)	309
SchI	GAGTC	1 cut(s)	3
ScrFI	CCNGG	2 cut(s)	233, 291
SetI	ASST	5 cut(s)	107, 112, 188, 220, 356
SmiMI	CAYNNNNRTG	1 cut(s)	47
SsiI	CCGC	4 cut(s)	54, 87, 138, 208
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	2 cut(s)	231, 289
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	341, 349
TaqI	TCGA	1 cut(s)	259
TauI	GCSGC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	3 cut(s)	49, 94, 203
TseI	GCWGC	4 cut(s)	74, 102, 239, 278
Tsp45I	GTSAC	3 cut(s)	49, 94, 203
TspDTI	ATGAA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	331
XceI	RCATGY	1 cut(s)	46
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.