Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001256.1

Orthogroup ID

OG0005968

Physical Location & Seq

Genomic Coordinates Reverse (-)

44381 .. 49157

Gene Structure 4777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001256.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

atggccggaaccctagctaagctggcttgtgtgctcgtgatgtgcatggtggtcgccgaagcggccatgacatgcaaccagatccagggcgggatggcaccgtgcctgggctacctcaccaaaggtgggatccccagtgcggggtgttgcaccaacctaagaaacatggtcaactcggcgagaaccaccgctgaccgcaagaatgcttgcaagtgcttgaaagcagctgctgctaaattccaagggatcaacccaaccaacgctgctaagctcccttccaactgcaaggtcaacattccttacaagatcagcgtctccactaattgcgccagacctgggactaaagaaaacaccatcaccaccctattgtcaacaccatccatccaccactgttccaaatcgccatcgctccaactcgatcccagacaagaaggacccactagaaggccaaggatgattgtctatagccagacgttttctccaccgctgctgacccaactccagaacaggaactaccccgagaccgcgaaagagaagattgtcactgccacatccttagcccaggccgggcccacactcagattaaggcccagtccgccaccgccgaaacactcgccaccactggaaacagaccgccgccagcatcataccatcttcccttccgccgtaaaccagaccaatatcgaaccagccatcacccctgaaggagcggaatcccatcgtcctgacgccaaccttccatcatccccactactcaggcaaggcgcaccaccccaccccaccccagacccaacccaaaccttccgaatccgatcgaagcaaactgtctggatcgaaagcccgaagaaaccagcgaagccgccacccggtcatcaccgccaagagacctccgatcccgccactctaactcagagccaccccccgccgtccgcactcctccctcgtatagagcaataccgatcccacttgcctgccgccaacgtcgatgtcgccaaacgatctggtttgctccgtcatcccccgcaatctcttctccgactggacctctcacaatcgggtactaagtccctgctgtcccgtccgacgacgacgccggagggcgcgccgccggacaggcgctgctcactctctgttttgcctagggtttctctccctagcggcttgaacaaaaaaagtaaaataacctaccagcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

398

Amino Acids

43.06

Weight (kDa)

10.07

Isoelectric Point (pI)

64.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15050 AT2G15050 AT2G15050 AT2G38530 AT2G38540 AT3G51600 AT5G59310 AT5G59320
fragaria_vesca	FvH4_6g09990
malus_domestica	MD04G1173500.v1.1 MD12G1187000.v1.1
prunus_persica	Prupe.6G292500_v2.0.a1
pyrus_communis	pycom12g17530
rosa_chinensis	RchiOBHm_Chr3g0460661
rosa_multiflora	Rmu_co8170460.1_g000001 Rmu_sc0001256.1_g000011 Rmu_sc0011069.1_g000011
rosa_roxburghii	Rroxscaffold_6G00419320
rosa_rugosa	Rorug03G0044600 Rorug03G0044700 Rorug03G0044800 Rorug03G0044900
rosa_samantha	Rh3AG102500 Rh3BG106200 Rh3CG108100 Rh3DG107700
rosa_wichuraiana	Rw3G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	710
AccII	CGCG	2 cut(s)	527, 1103
AclWI	GGATC	8 cut(s)	76, 124, 137, 254, 413, 839, 887, 954
AcoI	YGGCCR	2 cut(s)	3, 63
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	723
AcyI	GRCGYC	2 cut(s)	729, 1091
AfaI	GTAC	1 cut(s)	1060
AgsI	TTSAA	2 cut(s)	220, 1165
AjnI	CCWGG	4 cut(s)	84, 105, 334, 561
AluBI	AGCT	4 cut(s)	17, 22, 227, 271
AluI	AGCT	4 cut(s)	17, 22, 227, 271
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	3 cut(s)	319, 515, 878
AlwI	GGATC	8 cut(s)	76, 124, 137, 254, 413, 839, 887, 954
AlwNI	CAGNNNCTG	2 cut(s)	230, 1119
Ama87I	CYCGRG	1 cut(s)	518
AoxI	GGCC	6 cut(s)	3, 63, 446, 564, 569, 587
ApaI	GGGCCC	1 cut(s)	573
ApeKI	GCWGC	6 cut(s)	224, 227, 230, 263, 487, 1119
ApoI	RAATTY	1 cut(s)	236
AscI	GGCGCGCC	1 cut(s)	1101
AspA2I	CCTAGG	1 cut(s)	1139
AspLEI	GCGC	5 cut(s)	329, 767, 1103, 1105, 1119
AspS9I	GGNCC	5 cut(s)	434, 569, 570, 588, 1042
AsuC2I	CCSGG	2 cut(s)	568, 867
AsuHPI	GGTGA	4 cut(s)	109, 349, 688, 866
AvaI	CYCGRG	1 cut(s)	518
AvaII	GGWCC	2 cut(s)	434, 1042
AvrII	CCTAGG	1 cut(s)	1139
BaeGI	GKGCMC	1 cut(s)	573
BamHI	GGATCC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	573
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	6 cut(s)	214, 217, 236, 250, 474, 1106
BccI	CCATC	9 cut(s)	88, 362, 385, 389, 412, 659, 701, 726, 748
BceAI	ACGGC	2 cut(s)	650, 910
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	4 cut(s)	86, 107, 336, 563
BcnI	CCSGG	2 cut(s)	568, 867
BcoDI	GTCTC	3 cut(s)	319, 515, 878
BfaI	CTAG	4 cut(s)	14, 441, 1140, 1155
BfmI	CTRYAG	1 cut(s)	463
BfoI	RGCGCY	1 cut(s)	1120
BglI	GCCNNNNNGGC	2 cut(s)	62, 1114
BlnI	CCTAGG	1 cut(s)	1139
BlpI	GCTNAGC	2 cut(s)	18, 267
Bme1390I	CCNGG	6 cut(s)	86, 107, 336, 563, 568, 867
Bme18I	GGWCC	2 cut(s)	434, 1042
BmeT110I	CYCGRG	1 cut(s)	518
BmgT120I	GGNCC	5 cut(s)	434, 569, 570, 588, 1042
BmiI	GGNNCC	5 cut(s)	10, 99, 131, 436, 571
BmrFI	CCNGG	6 cut(s)	86, 107, 336, 563, 568, 867
BmrI	ACTGGG	2 cut(s)	129, 585
BmsI	GCATC	1 cut(s)	652
BmuI	ACTGGG	2 cut(s)	129, 585
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	556
Bpu1102I	GCTNAGC	2 cut(s)	18, 267
BpuMI	CCSGG	2 cut(s)	568, 867
BsaHI	GRCGYC	2 cut(s)	729, 1091
BsaI	GGTCTC	2 cut(s)	515, 878
BsaJI	CCNNGG	7 cut(s)	85, 106, 241, 335, 449, 561, 1139
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bse1I	ACTGG	4 cut(s)	135, 591, 627, 1044
BseBI	CCWGG	4 cut(s)	86, 107, 336, 563
BseDI	CCNNGG	7 cut(s)	85, 106, 241, 335, 449, 561, 1139
BseGI	GGATG	7 cut(s)	99, 377, 381, 459, 551, 743, 1015
BseMII	CTCAG	3 cut(s)	592, 769, 923
BseNI	ACTGG	4 cut(s)	135, 591, 627, 1044
BsePI	GCGCGC	1 cut(s)	1101
BseRI	GAGGAG	1 cut(s)	926
BseSI	GKGCMC	1 cut(s)	573
BseXI	GCAGC	6 cut(s)	214, 217, 236, 250, 474, 1106
Bsh1236I	CGCG	2 cut(s)	527, 1103
Bsh1285I	CGRYCG	1 cut(s)	815
BshFI	GGCC	6 cut(s)	5, 65, 448, 566, 571, 589
BshNI	GGYRCC	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	815
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	5 cut(s)	6, 567, 867, 1094, 1109
BslFI	GGGAC	3 cut(s)	352, 1051, 1060
BsmAI	GTCTC	3 cut(s)	319, 515, 878
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	3 cut(s)	352, 1051, 1060
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	6 cut(s)	5, 65, 448, 566, 571, 589
Bso31I	GGTCTC	2 cut(s)	515, 878
BsoBI	CYCGRG	1 cut(s)	518
Bsp120I	GGGCCC	1 cut(s)	569
Bsp1286I	GDGCHC	2 cut(s)	36, 573
Bsp1720I	GCTNAGC	2 cut(s)	18, 267
BspANI	GGCC	6 cut(s)	5, 65, 448, 566, 571, 589
BspCNI	CTCAG	3 cut(s)	591, 768, 922
BspFNI	CGCG	2 cut(s)	527, 1103
BspLI	GGNNCC	5 cut(s)	10, 99, 131, 436, 571
BspPI	GGATC	8 cut(s)	76, 124, 137, 254, 413, 839, 887, 954
BspT107I	GGYRCC	1 cut(s)	97
BspTNI	GGTCTC	2 cut(s)	515, 878
BsrBI	CCGCTC	1 cut(s)	710
BsrI	ACTGG	4 cut(s)	135, 591, 627, 1044
BssECI	CCNNGG	7 cut(s)	85, 106, 241, 335, 449, 561, 1139
BssHII	GCGCGC	1 cut(s)	1101
BssNI	GRCGYC	2 cut(s)	729, 1091
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	3 cut(s)	241, 449, 1139
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	4 cut(s)	86, 107, 336, 563
Bst4CI	ACNGT	3 cut(s)	102, 392, 826
Bst6I	CTCTTC	1 cut(s)	1035
BstACI	GRCGYC	2 cut(s)	729, 1091
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	5 cut(s)	24, 208, 641, 972, 1103
BstDEI	CTNAG	8 cut(s)	18, 158, 267, 556, 578, 755, 909, 1062
BstF5I	GGATG	7 cut(s)	99, 377, 381, 459, 551, 743, 1015
BstFNI	CGCG	2 cut(s)	527, 1103
BstH2I	RGCGCY	1 cut(s)	1120
BstHHI	GCGC	5 cut(s)	329, 767, 1103, 1105, 1119
BstMAI	GTCTC	3 cut(s)	319, 515, 878
BstMCI	CGRYCG	1 cut(s)	815
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 62, 230, 595, 1114
BstNI	CCWGG	4 cut(s)	86, 107, 336, 563
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	6 cut(s)	84, 105, 334, 561, 566, 865
BstSFI	CTRYAG	1 cut(s)	463
BstSLI	GKGCMC	1 cut(s)	573
BstUI	CGCG	2 cut(s)	527, 1103
BstV1I	GCAGC	6 cut(s)	214, 217, 236, 250, 474, 1106
BstX2I	RGATCY	2 cut(s)	81, 129
BstYI	RGATCY	2 cut(s)	81, 129
BsuRI	GGCC	6 cut(s)	5, 65, 448, 566, 571, 589
BtgZI	GCGATG	1 cut(s)	390
BtsCI	GGATG	7 cut(s)	99, 377, 381, 459, 551, 743, 1015
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	4 cut(s)	142, 388, 543, 620
Cac8I	GCNNGC	5 cut(s)	24, 208, 641, 972, 1103
CaiI	CAGNNNCTG	2 cut(s)	230, 1119
CfoI	GCGC	5 cut(s)	329, 767, 1103, 1105, 1119
Cfr13I	GGNCC	5 cut(s)	434, 569, 570, 588, 1042
CseI	GACGC	3 cut(s)	301, 737, 1099
Csp6I	GTAC	1 cut(s)	1059
CviAII	CATG	4 cut(s)	46, 67, 72, 166
CviQI	GTAC	1 cut(s)	1059
DdeI	CTNAG	8 cut(s)	18, 158, 267, 556, 578, 755, 909, 1062
EaeI	YGGCCR	2 cut(s)	3, 63
Eam1104I	CTCTTC	1 cut(s)	1035
EarI	CTCTTC	1 cut(s)	1035
EciI	GGCGGA	2 cut(s)	585, 652
Eco130I	CCWWGG	3 cut(s)	241, 449, 1139
Eco24I	GRGCYC	1 cut(s)	573
Eco31I	GGTCTC	2 cut(s)	515, 878
Eco47I	GGWCC	2 cut(s)	434, 1042
Eco57I	CTGAAG	1 cut(s)	723
Eco88I	CYCGRG	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	434
EcoRII	CCWGG	4 cut(s)	84, 105, 334, 561
EcoT14I	CCWWGG	3 cut(s)	241, 449, 1139
EcoT38I	GRGCYC	1 cut(s)	573
ErhI	CCWWGG	3 cut(s)	241, 449, 1139
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	4 cut(s)	49, 70, 75, 169
FaiI	YATR	7 cut(s)	47, 68, 73, 167, 465, 648, 947
FaqI	GGGAC	3 cut(s)	352, 1051, 1060
FatI	CATG	4 cut(s)	45, 66, 71, 165
FauI	CCCGC	5 cut(s)	83, 133, 904, 930, 1029
FokI	GGATG	7 cut(s)	106, 364, 368, 466, 538, 730, 1002
FriOI	GRGCYC	1 cut(s)	573
FspBI	CTAG	4 cut(s)	14, 441, 1140, 1155
GlaI	GCGC	5 cut(s)	328, 766, 1102, 1104, 1118
GsuI	CTGGAG	1 cut(s)	485
HaeII	RGCGCY	1 cut(s)	1120
HaeIII	GGCC	6 cut(s)	5, 65, 448, 566, 571, 589
HapII	CCGG	5 cut(s)	6, 567, 867, 1094, 1109
HgaI	GACGC	3 cut(s)	301, 737, 1099
HhaI	GCGC	5 cut(s)	329, 767, 1103, 1105, 1119
Hin1I	GRCGYC	2 cut(s)	729, 1091
Hin1II	CATG	4 cut(s)	49, 70, 75, 169
Hin6I	GCGC	5 cut(s)	327, 765, 1101, 1103, 1117
HinP1I	GCGC	5 cut(s)	327, 765, 1101, 1103, 1117
HincII	GTYRAC	3 cut(s)	172, 292, 372
HindII	GTYRAC	3 cut(s)	172, 292, 372
HinfI	GANTC	2 cut(s)	713, 807
HpaII	CCGG	5 cut(s)	6, 567, 867, 1094, 1109
HphI	GGTGA	4 cut(s)	109, 349, 688, 866
Hpy166II	GTNNAC	4 cut(s)	172, 292, 372, 670
Hpy188I	TCNGA	7 cut(s)	581, 806, 812, 892, 912, 1037, 1083
Hpy188III	TCNNGA	4 cut(s)	37, 502, 725, 829
Hpy8I	GTNNAC	4 cut(s)	172, 292, 372, 670
Hpy99I	CGWCG	4 cut(s)	986, 1087, 1090, 1093
HpyAV	CCTTC	7 cut(s)	285, 425, 438, 669, 698, 746, 811
HpyCH4III	ACNGT	3 cut(s)	102, 392, 826
HpyCH4IV	ACGT	2 cut(s)	473, 981
HpyCH4V	TGCA	5 cut(s)	45, 75, 150, 210, 285
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 62, 230, 595, 1114
HpyF3I	CTNAG	8 cut(s)	18, 158, 267, 556, 578, 755, 909, 1062
HpySE526I	ACGT	2 cut(s)	473, 981
Hsp92I	GRCGYC	2 cut(s)	729, 1091
Hsp92II	CATG	4 cut(s)	49, 70, 75, 169
HspAI	GCGC	5 cut(s)	327, 765, 1101, 1103, 1117
LmnI	GCTCC	4 cut(s)	276, 414, 707, 1014
Lsp1109I	GCAGC	6 cut(s)	214, 217, 236, 250, 474, 1106
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	4 cut(s)	14, 441, 1140, 1155
MaeII	ACGT	2 cut(s)	473, 981
MaeIII	GTNAC	1 cut(s)	541
MbiI	CCGCTC	1 cut(s)	710
MboII	GAAGA	4 cut(s)	547, 646, 856, 1022
MflI	RGATCY	2 cut(s)	81, 129
MhlI	GDGCHC	2 cut(s)	36, 573
MluCI	AATT	2 cut(s)	236, 322
MmeI	TCCRAC	4 cut(s)	303, 436, 1060, 1106
MnlI	CCTC	6 cut(s)	125, 898, 947, 951, 1055, 1090
MseI	TTAA	1 cut(s)	584
MspA1I	CMGCKG	3 cut(s)	191, 227, 487
MspI	CCGG	5 cut(s)	6, 567, 867, 1094, 1109
MspR9I	CCNGG	6 cut(s)	86, 107, 336, 563, 568, 867
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	4 cut(s)	86, 107, 336, 563
MvnI	CGCG	2 cut(s)	527, 1103
MwoI	GCNNNNNNNGC	5 cut(s)	23, 62, 230, 595, 1114
NciI	CCSGG	2 cut(s)	568, 867
NlaIII	CATG	4 cut(s)	49, 70, 75, 169
NlaIV	GGNNCC	5 cut(s)	10, 99, 131, 436, 571
NmeAIII	GCCGAG	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	541
NspI	RCATGY	1 cut(s)	75
PalAI	GGCGCGCC	1 cut(s)	1101
PauI	GCGCGC	1 cut(s)	1101
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	713, 807
Ple19I	CGATCG	1 cut(s)	815
PpuMI	RGGWCCY	1 cut(s)	434
Psp5II	RGGWCCY	1 cut(s)	434
Psp6I	CCWGG	4 cut(s)	84, 105, 334, 561
PspGI	CCWGG	4 cut(s)	84, 105, 334, 561
PspN4I	GGNNCC	5 cut(s)	10, 99, 131, 436, 571
PspOMI	GGGCCC	1 cut(s)	569
PspPI	GGNCC	5 cut(s)	434, 569, 570, 588, 1042
PspPPI	RGGWCCY	1 cut(s)	434
PsrI	GAACNNNNNNTAC	2 cut(s)	497, 529
PstNI	CAGNNNCTG	2 cut(s)	230, 1119
PsuI	RGATCY	2 cut(s)	81, 129
PteI	GCGCGC	1 cut(s)	1101
PvuI	CGATCG	1 cut(s)	815
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	1060
RsaNI	GTAC	1 cut(s)	1059
SaqAI	TTAA	1 cut(s)	584
Sau96I	GGNCC	5 cut(s)	434, 569, 570, 588, 1042
ScrFI	CCNGG	6 cut(s)	86, 107, 336, 563, 568, 867
SduI	GDGCHC	2 cut(s)	36, 573
SfaNI	GCATC	1 cut(s)	652
SfcI	CTRYAG	1 cut(s)	463
SgsI	GGCGCGCC	1 cut(s)	1101
SinI	GGWCC	2 cut(s)	434, 1042
Sse9I	AATT	2 cut(s)	236, 322
SspMI	CTAG	4 cut(s)	14, 441, 1140, 1155
StyD4I	CCNGG	6 cut(s)	84, 105, 334, 561, 566, 865
StyI	CCWWGG	3 cut(s)	241, 449, 1139
TaaI	ACNGT	3 cut(s)	102, 392, 826
TaiI	ACGT	2 cut(s)	476, 984
TaqI	TCGA	5 cut(s)	417, 684, 815, 834, 984
TasI	AATT	2 cut(s)	236, 322
TauI	GCSGC	6 cut(s)	65, 639, 862, 977, 1108, 1161
TfiI	GAWTC	2 cut(s)	713, 807
Tru1I	TTAA	1 cut(s)	584
Tru9I	TTAA	1 cut(s)	584
TscAI	CASTG	4 cut(s)	142, 395, 550, 627
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	6 cut(s)	224, 227, 230, 263, 487, 1119
Tsp45I	GTSAC	1 cut(s)	541
TspGWI	ACGGA	1 cut(s)	1001
TspRI	CASTG	4 cut(s)	142, 395, 550, 627
VpaK11BI	GGWCC	2 cut(s)	434, 1042
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	75
XmaJI	CCTAGG	1 cut(s)	1139
XspI	CTAG	4 cut(s)	14, 441, 1140, 1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.