Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005968

Physical Location & Seq

Genomic Coordinates Forward (+)

26933975 .. 26935200

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G292500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCACATCGAGTCTCGATCATCTTCTGCATGCGTTTTGGAGGGCATTGAAACCAGACGTCTACAGTCAGTGCCATTAGTTCTGGACACAGAAAAGCACAACCTCCCACTACTATTTTTCCCTATAAAAACACCACACTCTGCACCCCATACATCACTCACCAACATTAATTCAATTGATCAAAGCACCCCAAGCGAAAGAAACACTACAACAATTGCCATGGCTATCCTTAAGGTGGTTTGTGCTCTCTTCATGTGCATGGTGGTGGCTGCACCCTTGATCACCGAGGCAGCCCTTACTTGTCCTCAGATTCAGGCCGGGCTTGCCCCATGTCTGGGATACCTCCAGCGGGGCGGTGTCCCCGCTGGGGGCTGCTGCCCCGGGATCAAAAGACTGGTCGGCTCAGCCACGACCACAGCTGATCGCCAAAATGCTTGCAAGTGCTTGAAAACAGTTGCTGGCGCAGTCAAAGGCATAAACCCAGGCTACGCTGCTGCCCTCCCTTCCTTGTGTGGCGTCAAAATTCCCTACAAGATCAGCGCCTCCACTAACTGCAATAGCGTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

190

Amino Acids

19.76

Weight (kDa)

9.04

Isoelectric Point (pI)

61.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15050 AT2G15050 AT2G15050 AT2G38530 AT2G38540 AT3G51600 AT5G59310 AT5G59320
fragaria_vesca	FvH4_6g09990
malus_domestica	MD04G1173500.v1.1 MD12G1187000.v1.1
prunus_persica	Prupe.6G292500_v2.0.a1
pyrus_communis	pycom12g17530
rosa_chinensis	RchiOBHm_Chr3g0460661
rosa_multiflora	Rmu_co8170460.1_g000001 Rmu_sc0001256.1_g000011 Rmu_sc0011069.1_g000011
rosa_roxburghii	Rroxscaffold_6G00419320
rosa_rugosa	Rorug03G0044600 Rorug03G0044700 Rorug03G0044800 Rorug03G0044900
rosa_samantha	Rh3AG102500 Rh3BG106200 Rh3CG108100 Rh3DG107700
rosa_wichuraiana	Rw3G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	61
AciI	CCGC	3 cut(s)	349, 354, 363
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	522
AcyI	GRCGYC	2 cut(s)	58, 516
AfiI	CCNNNNNNNGG	6 cut(s)	235, 334, 335, 349, 367, 368
AflII	CTTAAG	1 cut(s)	230
AgsI	TTSAA	3 cut(s)	50, 174, 448
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	1 cut(s)	419
AluI	AGCT	1 cut(s)	419
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	392
AlwNI	CAGNNNCTG	1 cut(s)	458
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	6 cut(s)	269, 290, 372, 375, 491, 494
ApoI	RAATTY	1 cut(s)	522
ArsI	GACNNNNNNTTYG	2 cut(s)	381, 413
AseI	ATTAAT	1 cut(s)	168
AspLEI	GCGC	2 cut(s)	464, 542
AsuC2I	CCSGG	3 cut(s)	319, 381, 382
AsuHPI	GGTGA	2 cut(s)	151, 274
AvaI	CYCGRG	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	6 cut(s)	256, 302, 359, 362, 478, 481
BciT130I	CCWGG	1 cut(s)	483
BciVI	GTATCC	1 cut(s)	332
BclI	TGATCA	2 cut(s)	178, 279
BcnI	CCSGG	3 cut(s)	319, 381, 382
BcoDI	GTCTC	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	62
BfoI	RGCGCY	1 cut(s)	543
BfrI	CTTAAG	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	332
BisI	GCNGC	6 cut(s)	270, 291, 373, 376, 492, 495
BlpI	GCTNAGC	1 cut(s)	403
BlsI	GCNGC	6 cut(s)	271, 292, 374, 377, 493, 496
Bme1390I	CCNGG	4 cut(s)	319, 381, 382, 483
BmeT110I	CYCGRG	1 cut(s)	380
BmrFI	CCNGG	4 cut(s)	319, 381, 382, 483
BpmI	CTGGAG	1 cut(s)	329
Bpu1102I	GCTNAGC	1 cut(s)	403
BpuMI	CCSGG	3 cut(s)	319, 381, 382
BsaHI	GRCGYC	2 cut(s)	58, 516
BsaJI	CCNNGG	5 cut(s)	219, 285, 379, 380, 481
Bsc4I	CCNNNNNNNGG	6 cut(s)	235, 334, 335, 349, 367, 368
Bse1I	ACTGG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	5 cut(s)	219, 285, 379, 380, 481
BseLI	CCNNNNNNNGG	6 cut(s)	235, 334, 335, 349, 367, 368
BseMII	CTCAG	2 cut(s)	320, 417
BseNI	ACTGG	1 cut(s)	399
BseXI	GCAGC	6 cut(s)	256, 302, 359, 362, 478, 481
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	2 cut(s)	126, 255
BshFI	GGCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	318, 381
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	6 cut(s)	235, 334, 335, 349, 367, 368
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	317
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	6 cut(s)	17, 178, 279, 384, 421, 534
Bsp1720I	GCTNAGC	1 cut(s)	403
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	3 cut(s)	349, 354, 363
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	2 cut(s)	319, 416
BspPI	GGATC	1 cut(s)	392
BspTI	CTTAAG	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	5 cut(s)	219, 285, 379, 380, 481
BssMI	GATC	6 cut(s)	17, 178, 279, 384, 421, 534
BssNI	GRCGYC	2 cut(s)	58, 516
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	66, 454
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	2 cut(s)	58, 516
BstAFI	CTTAAG	1 cut(s)	230
BstC8I	GCNNGC	4 cut(s)	31, 324, 436, 460
BstDEI	CTNAG	2 cut(s)	306, 403
BstDSI	CCRYGG	1 cut(s)	219
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	2 cut(s)	464, 542
BstKTI	GATC	6 cut(s)	20, 181, 282, 387, 424, 537
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	6 cut(s)	17, 178, 279, 384, 421, 534
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 323
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	4 cut(s)	317, 379, 380, 481
BstSFI	CTRYAG	1 cut(s)	62
BstV1I	GCAGC	6 cut(s)	256, 302, 359, 362, 478, 481
BsuI	GTATCC	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	4 cut(s)	31, 324, 436, 460
CaiI	CAGNNNCTG	1 cut(s)	458
CfoI	GCGC	2 cut(s)	464, 542
Cfr9I	CCCGGG	1 cut(s)	380
CseI	GACGC	1 cut(s)	505
CviAII	CATG	5 cut(s)	30, 220, 253, 259, 330
DdeI	CTNAG	2 cut(s)	306, 403
DpnI	GATC	6 cut(s)	19, 180, 281, 386, 423, 536
DpnII	GATC	6 cut(s)	17, 178, 279, 384, 421, 534
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	5 cut(s)	33, 223, 256, 262, 333
FaiI	YATR	8 cut(s)	31, 125, 150, 221, 254, 260, 331, 476
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	5 cut(s)	29, 219, 252, 258, 329
FauI	CCCGC	2 cut(s)	342, 370
FbaI	TGATCA	2 cut(s)	178, 279
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	6 cut(s)	270, 291, 373, 376, 492, 495
Fsp4HI	GCNGC	6 cut(s)	270, 291, 373, 376, 492, 495
GlaI	GCGC	2 cut(s)	463, 541
GluI	GCNGC	6 cut(s)	270, 291, 373, 376, 492, 495
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	329
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	2 cut(s)	318, 381
HgaI	GACGC	1 cut(s)	505
HhaI	GCGC	2 cut(s)	464, 542
Hin1I	GRCGYC	2 cut(s)	58, 516
Hin1II	CATG	5 cut(s)	33, 223, 256, 262, 333
Hin6I	GCGC	2 cut(s)	462, 540
HinP1I	GCGC	2 cut(s)	462, 540
HinfI	GANTC	2 cut(s)	11, 310
HpaII	CCGG	2 cut(s)	318, 381
HphI	GGTGA	2 cut(s)	151, 274
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	2 cut(s)	15, 83
Hpy8I	GTNNAC	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	513
HpyCH4III	ACNGT	2 cut(s)	66, 454
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	7 cut(s)	4, 29, 143, 258, 272, 438, 555
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 323
HpyF3I	CTNAG	2 cut(s)	306, 403
HpySE526I	ACGT	1 cut(s)	58
Hsp92I	GRCGYC	2 cut(s)	58, 516
Hsp92II	CATG	5 cut(s)	33, 223, 256, 262, 333
HspAI	GCGC	2 cut(s)	462, 540
Ksp22I	TGATCA	2 cut(s)	178, 279
Kzo9I	GATC	6 cut(s)	17, 178, 279, 384, 421, 534
Lsp1109I	GCAGC	6 cut(s)	256, 302, 359, 362, 478, 481
MaeII	ACGT	1 cut(s)	58
MalI	GATC	6 cut(s)	19, 180, 281, 386, 423, 536
MboI	GATC	6 cut(s)	17, 178, 279, 384, 421, 534
MboII	GAAGA	2 cut(s)	15, 241
MfeI	CAATTG	2 cut(s)	174, 213
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	4 cut(s)	169, 174, 213, 522
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	7 cut(s)	34, 113, 280, 315, 353, 509, 553
MseI	TTAA	2 cut(s)	168, 231
MslI	CAYNNNNRTG	2 cut(s)	257, 263
MspA1I	CMGCKG	3 cut(s)	349, 365, 419
MspCI	CTTAAG	1 cut(s)	230
MspI	CCGG	2 cut(s)	318, 381
MspR9I	CCNGG	4 cut(s)	319, 381, 382, 483
MunI	CAATTG	2 cut(s)	174, 213
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	192, 323
NciI	CCSGG	3 cut(s)	319, 381, 382
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	6 cut(s)	17, 178, 279, 384, 421, 534
NlaIII	CATG	5 cut(s)	33, 223, 256, 262, 333
NspI	RCATGY	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	6 cut(s)	271, 292, 374, 377, 493, 496
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PshBI	ATTAAT	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	481
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	481
PstNI	CAGNNNCTG	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	419
RseI	CAYNNNNRTG	2 cut(s)	257, 263
SaqAI	TTAA	2 cut(s)	168, 231
SatI	GCNGC	6 cut(s)	270, 291, 373, 376, 492, 495
Sau3AI	GATC	6 cut(s)	17, 178, 279, 384, 421, 534
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	4 cut(s)	319, 381, 382, 483
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	5 cut(s)	61, 105, 237, 345, 421
SfcI	CTRYAG	1 cut(s)	62
SmaI	CCCGGG	1 cut(s)	382
SmiMI	CAYNNNNRTG	2 cut(s)	257, 263
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	4 cut(s)	169, 174, 213, 522
SsiI	CCGC	3 cut(s)	349, 354, 363
StyD4I	CCNGG	4 cut(s)	317, 379, 380, 481
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	66, 454
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	2 cut(s)	9, 16
TasI	AATT	4 cut(s)	169, 174, 213, 522
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	2 cut(s)	168, 231
Tru9I	TTAA	2 cut(s)	168, 231
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	6 cut(s)	269, 290, 372, 375, 491, 494
TspDTI	ATGAA	1 cut(s)	241
TspMI	CCCGGG	1 cut(s)	380
TspRI	CASTG	1 cut(s)	75
Vha464I	CTTAAG	1 cut(s)	230
VspI	ATTAAT	1 cut(s)	168
XapI	RAATTY	1 cut(s)	522
XceI	RCATGY	1 cut(s)	33
XmaI	CCCGGG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	61
ZraI	GACGTC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.