Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005968

Physical Location & Seq

Genomic Coordinates Forward (+)

16128176 .. 16129399

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCTGGAGTGATGAAGTTGGCATGCATGGTCTTGGCTTGCATGATTGTGGCCGGTCCAATCACAGCGAACGCGCTTATGAGTTGTGGCACCGTCAACGGCAACCTGGCAGGGTGCATTGCCTACTTGACCCGAGGTGCTCCACTTACCCAAGGGTGCTGCAACGGCGTTACTAACCTTAAAAACATGGCCAGTACAACCCCAGACCGTCAGCAAGCTTGCCGTTGCCTTCAATCTGCCGCTAAAGCCGTTGGTCCCGGTCTCAACACTGCCCGTGCAGCTGGACTTCCTAGCGCATGCAAAGTCAATATTCCTTACAAAATCAGCGCCAGCACCAACTGCAACACCGTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010035 GO:0010154 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016049 GO:0019222 GO:0022412 GO:0022414 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033036 GO:0040007 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0060560 GO:0061024 GO:0061458 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090376 GO:0090378 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

118

Amino Acids

11.94

Weight (kDa)

9.32

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tryp_alpha_amyl	PF00234	29 - 114	4.7e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15050 AT2G15050 AT2G15050 AT2G38530 AT2G38540 AT3G51600 AT5G59310 AT5G59320
fragaria_vesca	FvH4_6g09990
malus_domestica	MD04G1173500.v1.1 MD12G1187000.v1.1
prunus_persica	Prupe.6G292500_v2.0.a1
pyrus_communis	pycom12g17530
rosa_chinensis	RchiOBHm_Chr3g0460661
rosa_multiflora	Rmu_co8170460.1_g000001 Rmu_sc0001256.1_g000011 Rmu_sc0011069.1_g000011
rosa_roxburghii	Rroxscaffold_6G00419320
rosa_rugosa	Rorug03G0044600 Rorug03G0044700 Rorug03G0044800 Rorug03G0044900
rosa_samantha	Rh3AG102500 Rh3BG106200 Rh3CG108100 Rh3DG107700
rosa_wichuraiana	Rw3G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	1 cut(s)	74
AciI	CCGC	1 cut(s)	240
AcoI	YGGCCR	2 cut(s)	51, 189
AfaI	GTAC	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	2 cut(s)	218, 281
AluI	AGCT	2 cut(s)	218, 281
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	2 cut(s)	51, 189
ApeKI	GCWGC	2 cut(s)	159, 278
AspLEI	GCGC	3 cut(s)	76, 296, 329
AspS9I	GGNCC	2 cut(s)	56, 254
AsuC2I	CCSGG	1 cut(s)	258
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	2 cut(s)	56, 254
BalI	TGGCCA	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	146, 290
BceAI	ACGGC	4 cut(s)	115, 181, 207, 233
BciT130I	CCWGG	1 cut(s)	107
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	330
BisI	GCNGC	3 cut(s)	160, 240, 279
BlsI	GCNGC	3 cut(s)	161, 241, 280
Bme1390I	CCNGG	2 cut(s)	107, 258
Bme18I	GGWCC	2 cut(s)	56, 254
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	56, 254
BmiI	GGNNCC	2 cut(s)	91, 256
BmrFI	CCNGG	2 cut(s)	107, 258
BpmI	CTGGAG	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	133, 151
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	133, 151
BseMI	GCAATG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	146, 290
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	53, 191
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	54, 258
BslFI	GGGAC	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	53, 191
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	2 cut(s)	53, 191
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	91, 256
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	192
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	133, 151
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	3 cut(s)	94, 209, 349
BstAPI	GCANNNNNTGC	1 cut(s)	339
BstC8I	GCNNGC	6 cut(s)	25, 40, 216, 220, 298, 331
BstFNI	CGCG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	3 cut(s)	76, 296, 329
BstMAI	GTCTC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	4 cut(s)	165, 245, 278, 339
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	2 cut(s)	27, 300
BstSCI	CCNGG	2 cut(s)	105, 256
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	146, 290
BsuRI	GGCC	2 cut(s)	53, 191
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	6 cut(s)	25, 40, 216, 220, 298, 331
CfoI	GCGC	3 cut(s)	76, 296, 329
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	56, 254
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	5 cut(s)	24, 28, 43, 187, 297
CviJI	RGCY	7 cut(s)	5, 38, 53, 191, 218, 248, 281
CviKI_1	RGCY	7 cut(s)	5, 38, 53, 191, 218, 248, 281
CviQI	GTAC	1 cut(s)	195
EaeI	YGGCCR	2 cut(s)	51, 189
Eco130I	CCWWGG	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	2 cut(s)	56, 254
Eco88I	CYCGRG	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	151
EcoT22I	ATGCAT	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	5 cut(s)	27, 31, 46, 190, 300
FaiI	YATR	6 cut(s)	25, 29, 44, 80, 188, 298
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	5 cut(s)	23, 27, 42, 186, 296
Fnu4HI	GCNGC	3 cut(s)	160, 240, 279
Fsp4HI	GCNGC	3 cut(s)	160, 240, 279
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	3 cut(s)	75, 295, 328
GluI	GCNGC	3 cut(s)	160, 240, 279
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	53, 191
HapII	CCGG	2 cut(s)	54, 258
HhaI	GCGC	3 cut(s)	76, 296, 329
Hin1II	CATG	5 cut(s)	27, 31, 46, 190, 300
Hin6I	GCGC	3 cut(s)	74, 294, 327
HinP1I	GCGC	3 cut(s)	74, 294, 327
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	216
HpaII	CCGG	2 cut(s)	54, 258
Hpy166II	GTNNAC	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	3 cut(s)	94, 209, 349
HpyCH4V	TGCA	7 cut(s)	27, 42, 117, 162, 278, 300, 342
HpyF10VI	GCNNNNNNNGC	4 cut(s)	165, 245, 278, 339
Hsp92II	CATG	5 cut(s)	27, 31, 46, 190, 300
HspAI	GCGC	3 cut(s)	74, 294, 327
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	9 cut(s)	67, 92, 96, 119, 205, 216, 267, 271, 343
Lsp1109I	GCAGC	2 cut(s)	146, 290
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	191
MluNI	TGGCCA	1 cut(s)	191
MnlI	CCTC	2 cut(s)	128, 345
Mox20I	TGGCCA	1 cut(s)	191
Mph1103I	ATGCAT	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	2 cut(s)	54, 258
MspR9I	CCNGG	2 cut(s)	107, 258
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	4 cut(s)	165, 245, 278, 339
NciI	CCSGG	1 cut(s)	258
NlaIII	CATG	5 cut(s)	27, 31, 46, 190, 300
NlaIV	GGNNCC	2 cut(s)	91, 256
NsiI	ATGCAT	1 cut(s)	29
NspI	RCATGY	2 cut(s)	27, 300
PaeI	GCATGC	2 cut(s)	27, 300
PkrI	GCNGC	3 cut(s)	161, 241, 280
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	91, 256
PspPI	GGNCC	2 cut(s)	56, 254
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	3 cut(s)	160, 240, 279
Sau96I	GGNCC	2 cut(s)	56, 254
ScrFI	CCNGG	2 cut(s)	107, 258
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	6 cut(s)	108, 139, 180, 220, 283, 356
SinI	GGWCC	2 cut(s)	56, 254
SmiMI	CAYNNNNRTG	1 cut(s)	47
SphI	GCATGC	2 cut(s)	27, 300
SsiI	CCGC	1 cut(s)	240
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	105, 256
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	3 cut(s)	94, 209, 349
TatI	WGTACW	1 cut(s)	194
TauI	GCSGC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	2 cut(s)	159, 278
TspDTI	ATGAA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	2 cut(s)	56, 254
XceI	RCATGY	2 cut(s)	27, 300
XspI	CTAG	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.