RchiOBHm_Chr3g0460661

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
8691130 .. 8691910
781 bp
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UTR
Exon/CDS
Intron
PRQ42716

Sequence Viewer

Length: 342 bp
ATGGCCGGAACCCTAGCTAAGCTGGCTTGTGTGCTCGTGATGTGCATGGTGGTCGCCGAAGCGGCCATGACATGCAACCAGATCCAGGGCGGGATGGCACCGTGCCTGGGCTACCTCACCAAAGGTGGGATCCCCAGTGCGGGGTGTTGCACCAACCTAAGAAACATGGTCAACTCGGCGAGAACCACCGCTGACCGCAAGAATGCTTGCAAGTGCTTGAAAGCAGCTGCTGCTAAATTCCAAGGGATCAACCCAACCAACGCTGCTAAGCTCCCTTCCAACTGCAAGGTCAACATTCCTTACAAGATCAGCGTCTCCACTAATTGCGCCAGCGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

11.65

Weight (kDa)

9.45

Isoelectric Point (pI)

28.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 16 - 101 3.4e-07 Probable lipid transfer
Tryp_alpha_amyl PF00234 25 - 109 9e-13 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 97
AciI CCGC 5 cut(s) 62, 90, 140, 189, 196
AclWI GGATC 4 cut(s) 76, 124, 137, 254
AcoI YGGCCR 2 cut(s) 3, 63
AcsI RAATTY 1 cut(s) 236
AfiI CCNNNNNNNGG 6 cut(s) 85, 107, 126, 139, 140, 141
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 2 cut(s) 84, 105
AluBI AGCT 4 cut(s) 17, 22, 227, 271
AluI AGCT 4 cut(s) 17, 22, 227, 271
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 4 cut(s) 76, 124, 137, 254
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 2 cut(s) 3, 63
ApeKI GCWGC 4 cut(s) 224, 227, 230, 263
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 109
BamHI GGATCC 1 cut(s) 129
BanI GGYRCC 1 cut(s) 97
BauI CACGAG 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 4 cut(s) 214, 217, 236, 250
BccI CCATC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 2 cut(s) 86, 107
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 14
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 5 cut(s) 63, 225, 228, 231, 264
BlpI GCTNAGC 2 cut(s) 18, 267
BlsI GCNGC 5 cut(s) 64, 226, 229, 232, 265
Bme1390I CCNGG 2 cut(s) 86, 107
BmiI GGNNCC 3 cut(s) 10, 99, 131
BmrFI CCNGG 2 cut(s) 86, 107
BmrI ACTGGG 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 129
Bpu1102I GCTNAGC 2 cut(s) 18, 267
BsaJI CCNNGG 3 cut(s) 85, 106, 241
Bsc4I CCNNNNNNNGG 6 cut(s) 85, 107, 126, 139, 140, 141
Bse1I ACTGG 1 cut(s) 135
BseBI CCWGG 2 cut(s) 86, 107
BseDI CCNNGG 3 cut(s) 85, 106, 241
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 6 cut(s) 85, 107, 126, 139, 140, 141
BseNI ACTGG 1 cut(s) 135
BseXI GCAGC 4 cut(s) 214, 217, 236, 250
BshFI GGCC 2 cut(s) 5, 65
BshNI GGYRCC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 6 cut(s) 85, 107, 126, 139, 140, 141
BsmAI GTCTC 1 cut(s) 319
BsmBI CGTCTC 1 cut(s) 319
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 2 cut(s) 5, 65
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 4 cut(s) 81, 129, 246, 306
Bsp1720I GCTNAGC 2 cut(s) 18, 267
BspACI CCGC 5 cut(s) 62, 90, 140, 189, 196
BspANI GGCC 2 cut(s) 5, 65
BspLI GGNNCC 3 cut(s) 10, 99, 131
BspPI GGATC 4 cut(s) 76, 124, 137, 254
BspT107I GGYRCC 1 cut(s) 97
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 3 cut(s) 85, 106, 241
BssMI GATC 4 cut(s) 81, 129, 246, 306
BssSI CACGAG 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 86, 107
Bst4CI ACNGT 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 230
BstC8I GCNNGC 3 cut(s) 24, 208, 331
BstDEI CTNAG 3 cut(s) 18, 158, 267
BstF5I GGATG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 4 cut(s) 84, 132, 249, 309
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 4 cut(s) 81, 129, 246, 306
BstMWI GCNNNNNNNGC 3 cut(s) 23, 62, 230
BstNI CCWGG 2 cut(s) 86, 107
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 84, 105
BstV1I GCAGC 4 cut(s) 214, 217, 236, 250
BstX2I RGATCY 2 cut(s) 81, 129
BstYI RGATCY 2 cut(s) 81, 129
BsuRI GGCC 2 cut(s) 5, 65
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 142
Cac8I GCNNGC 3 cut(s) 24, 208, 331
CaiI CAGNNNCTG 1 cut(s) 230
CfoI GCGC 1 cut(s) 329
CseI GACGC 1 cut(s) 301
CviAII CATG 4 cut(s) 46, 67, 72, 166
CviJI RGCY 8 cut(s) 5, 17, 22, 26, 65, 111, 227, 271
CviKI_1 RGCY 8 cut(s) 5, 17, 22, 26, 65, 111, 227, 271
DdeI CTNAG 3 cut(s) 18, 158, 267
DpnI GATC 4 cut(s) 83, 131, 248, 308
DpnII GATC 4 cut(s) 81, 129, 246, 306
EaeI YGGCCR 2 cut(s) 3, 63
Eco130I CCWWGG 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 84, 105
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 4 cut(s) 49, 70, 75, 169
FaiI YATR 4 cut(s) 47, 68, 73, 167
FatI CATG 4 cut(s) 45, 66, 71, 165
FauI CCCGC 2 cut(s) 83, 133
Fnu4HI GCNGC 5 cut(s) 63, 225, 228, 231, 264
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 5 cut(s) 63, 225, 228, 231, 264
FspBI CTAG 1 cut(s) 14
GlaI GCGC 1 cut(s) 328
GluI GCNGC 5 cut(s) 63, 225, 228, 231, 264
HaeIII GGCC 2 cut(s) 5, 65
HapII CCGG 1 cut(s) 6
HgaI GACGC 1 cut(s) 301
HhaI GCGC 1 cut(s) 329
Hin1II CATG 4 cut(s) 49, 70, 75, 169
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HincII GTYRAC 2 cut(s) 172, 292
HindII GTYRAC 2 cut(s) 172, 292
HpaII CCGG 1 cut(s) 6
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 172, 292
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 2 cut(s) 172, 292
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4V TGCA 5 cut(s) 45, 75, 150, 210, 285
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 62, 230
HpyF3I CTNAG 3 cut(s) 18, 158, 267
Hsp92II CATG 4 cut(s) 49, 70, 75, 169
HspAI GCGC 1 cut(s) 327
Kzo9I GATC 4 cut(s) 81, 129, 246, 306
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 8 cut(s) 8, 19, 71, 92, 92, 98, 119, 148
Lsp1109I GCAGC 4 cut(s) 214, 217, 236, 250
MaeI CTAG 1 cut(s) 14
MalI GATC 4 cut(s) 83, 131, 248, 308
MboI GATC 4 cut(s) 81, 129, 246, 306
MflI RGATCY 2 cut(s) 81, 129
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 2 cut(s) 236, 322
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 191, 227
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 2 cut(s) 86, 107
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 2 cut(s) 86, 107
MwoI GCNNNNNNNGC 3 cut(s) 23, 62, 230
NdeII GATC 4 cut(s) 81, 129, 246, 306
NlaIII CATG 4 cut(s) 49, 70, 75, 169
NlaIV GGNNCC 3 cut(s) 10, 99, 131
NmeAIII GCCGAG 1 cut(s) 155
NspI RCATGY 1 cut(s) 75
PctI GAATGC 1 cut(s) 208
PkrI GCNGC 5 cut(s) 64, 226, 229, 232, 265
Psp6I CCWGG 2 cut(s) 84, 105
PspGI CCWGG 2 cut(s) 84, 105
PspN4I GGNNCC 3 cut(s) 10, 99, 131
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 2 cut(s) 81, 129
PvuII CAGCTG 1 cut(s) 227
SatI GCNGC 5 cut(s) 63, 225, 228, 231, 264
Sau3AI GATC 4 cut(s) 81, 129, 246, 306
ScrFI CCNGG 2 cut(s) 86, 107
SduI GDGCHC 1 cut(s) 36
SetI ASST 8 cut(s) 19, 24, 117, 127, 159, 229, 273, 291
Sse9I AATT 2 cut(s) 236, 322
SsiI CCGC 5 cut(s) 62, 90, 140, 189, 196
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 2 cut(s) 84, 105
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 102
TasI AATT 2 cut(s) 236, 322
TauI GCSGC 1 cut(s) 65
TscAI CASTG 1 cut(s) 142
TseI GCWGC 4 cut(s) 224, 227, 230, 263
TspRI CASTG 1 cut(s) 142
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 75
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.