AT2G15530

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002668
Physical Location & Seq
Forward (+)
6772714 .. 6777985
5272 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15530.3

Sequence Viewer

Length: 2115 bp
ATGAATCCAATGCAAGGGCCACGCAGTATTGGTGGTTCGTCTACTGAAGTGAATCAAGTAGATGGTGAATCGATTTATTGCACAGAGACGTCTTTGAATACCATGTTGAATCCAGCAGACACTGGATTTCCAAACAATAGTACACCTTCAGGACGACCAACTTATGCAAGTTCGAGTTCTCATGCTGCTCAAGATCATACCTGGTGGAGGTTTGGGGAATCCAGCTCCATACCAGGTCCTTCTGATCAGGTCAATTCCATTGGAATAAAGACAAGTCACCAGCTGCCTCAAGATGGTACTCACCACTTTGTTGGCTATGGATCTGAGGGAAGGCAAACAGGTCTGAATGGTATGATGGTAGATGGAGGGGTTCATGCTGGCAGTCACATCAGGAATGTGCCGTCTTTCTTGCGCGGTTCAAGTTCTAATCCTATGCCACAGCATGTAGATATGAGTATGGACATGGACAGCGATAATTGTAATGCACAGACTTCCGGGGTAGTTATCCGTCATAATAGCTATGGGAGTTCATTAGGAAGCTCAGTTCAGGCCGCTGGGGAGAGCAGCAGTGGTCCTGCTTCTCCATTTGGTGGTTGGGGTTCGTCTTGCAAAAGAAAGGCTCTTGAAGGATCCCCTAGTCATTATTTTTCTGGTGAAACTCCTAACCGCATTGTTCAGACTGAAAATAGTGCTTCGCATGCAAGTCTTTCTCAATATGGTGCTTCAAGTAGCTTAAGTTTGGCTACACCTTCACAAAGTTCTCCAAATGTTACTAATCATTTTGGCCGGACAGAACAAATGTTTGGATCTGGTGGTGGAAGAGCAGTTGCAGCCAGTGCTTTTCATTCTACAAGAAACACTGACACCTTATCTAGAGCTGGCAGACGATTAAATCCCAGGCAGCCTCAAGAGTCTGTAGCATTCAGCGTATCACATGGTGGGACTTCTGTACGTCCCACTGGTTCTTTGCAACAGAACTTACCATTAAACTCTCCTTTTGTAGATCCTCCAGATGTGAGATCATCATCAATTACTAGTGGCTCAAACACTGGTGAGAATCAGACAAATATAGTCCACCTCCCAGCTTTGACCAGGAATATACACCAATATGCTTGGGATGCTTCTTTCAGTTCTAGAGCCAGTAATCCTTCGGGTATTGGGATGCCTGCAGAGCGATTAGGACCACAGTGGGAAACACCGAGAAGCAACCAAGAGCAGCCCTTGTTTGCACCTGCAACTGACATGAGACAGCCGGTGCATGATCTTTGGAATTTCGCACGTGGAAGCCCTGGTTCATCTGTAGATTCTCTCTTTGTTCCTCGAGCAGGGCCGAGTTCAGCTATTCATACGCCACAGCCTAATCCCACATGGATTCCTCCTCAGAATGCCCCACCACATAATCCATCGAGAACATCAGAACTTTCTCCTTGGTCTTTATTTCCTAGTATTGAATCTCCATCTGCTAGTCATGGTGGCCCTCTTCCATTATTACCCGCAGGCCCTTCTGTTTCCTCAAATGAGGTGACAATGCCATCTAGTTCTAATAGCCGAAGCCATCGCTCACGGCATAGAAGATCAGGTTTGTTATTGGAGAGACAAAATGAACTTCTCCACTTGCGTCACATAGGGAGGAGCTTAGCTGCTGACGGTAATGGAAGGAATCAAATCATTTCTGAGATACGTCAGGTGTTGCATGCCATGAGAAGAGGAGAAAATCTACGGGTTGAGGATTACATGGTGTTCGATCCACTTATCTACCAGGGTATGACTGACATGCATGATAGGCATCGGGAAATGCGGCTTGATGTGGACAACATGTCGTATGAGGAGCTATTGGCACTTGGGGAACGCATAGGTGATGTGAGCACTGGCCTAAGTGAAGAGGTCATTTTGAAAGCAATGAAACAACACAAACATACATCTTCGTCTCCTTCTTCTGTTGAGTTGCATCAGAACATAGAGCCATGCTGCATTTGTCAGGAAGAGTATGTAGAAGGTGATAATCTAGGAACCTTGAAATGTGGACATGAATTCCACAAGGACTGTATCAAGCAATGGGTCATGATCAAGAATCTCTGCCCCATTTGTAAGACCGAAGCATTAAAGACGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0007568 GO:0008045 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009791 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010228 GO:0010259 GO:0010468 GO:0010498 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0021675 GO:0022008 GO:0022414 GO:0023051 GO:0023056 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0030510 GO:0030513 GO:0031175 GO:0031323 GO:0031326 GO:0032446 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0032991 GO:0035107 GO:0035108 GO:0035136 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048468 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048736 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051603 GO:0060173 GO:0060255 GO:0060384 GO:0061061 GO:0061458 GO:0061564 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090092 GO:0090100 GO:0090287 GO:0097485 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

704

Amino Acids

76.02

Weight (kDa)

6.47

Isoelectric Point (pI)

62.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 654 - 697 1e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 656 - 697 1.7e-12 Ring finger domain
zf-RING_11 PF17123 656 - 683 2.8e-07 RING-like zinc finger
zf-C3HC4 PF00097 656 - 696 1e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 656 - 696 1.3e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1240
AatII GACGTC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 1240
AccB7I CCANNNNNTGG 1 cut(s) 590
AccI GTMKAC 1 cut(s) 41
AccII CGCG 1 cut(s) 414
AciI CCGC 5 cut(s) 414, 552, 667, 1494, 1798
AclWI GGATC 6 cut(s) 328, 624, 637, 814, 998, 1739
AcoI YGGCCR 1 cut(s) 784
AcsI RAATTY 2 cut(s) 1270, 2030
AcuI CTGAAG 2 cut(s) 66, 132
AcvI CACGTG 1 cut(s) 1280
AcyI GRCGYC 2 cut(s) 89, 2108
AdeI CACNNNGTG 1 cut(s) 938
AfaI GTAC 3 cut(s) 142, 298, 951
AfiI CCNNNNNNNGG 5 cut(s) 14, 207, 293, 590, 1325
AflII CTTAAG 1 cut(s) 733
AflIII ACRYGT 1 cut(s) 1815
AgsI TTSAA 8 cut(s) 97, 109, 420, 626, 726, 1451, 1894, 2017
AhdI GACNNNNNGTC 1 cut(s) 1816
AhlI ACTAGT 1 cut(s) 1034
AjnI CCWGG 6 cut(s) 200, 232, 896, 1091, 1288, 1758
AjuI GAANNNNNNNTTGG 2 cut(s) 786, 818
AloI GAACNNNNNNTCC 2 cut(s) 528, 560
Alw21I GWGCWC 1 cut(s) 1868
Alw26I GTCTC 4 cut(s) 80, 1240, 1588, 1932
AlwI GGATC 6 cut(s) 328, 624, 637, 814, 998, 1739
AlwNI CAGNNNCTG 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 1320
AoxI GGCC 7 cut(s) 17, 549, 784, 1328, 1474, 1498, 1870
ApeKI GCWGC 8 cut(s) 185, 283, 564, 830, 901, 1216, 1640, 1968
ApoI RAATTY 2 cut(s) 1270, 2030
AspLEI GCGC 1 cut(s) 414
AspS9I GGNCC 7 cut(s) 17, 236, 572, 1181, 1328, 1475, 1499
AsuC2I CCSGG 1 cut(s) 496
AsuHPI GGTGA 8 cut(s) 77, 269, 293, 665, 1064, 1534, 1868, 2009
AvaI CYCGRG 1 cut(s) 1320
AvaII GGWCC 3 cut(s) 236, 572, 1181
BamHI GGATCC 1 cut(s) 629
BbrPI CACGTG 1 cut(s) 1280
Bbv12I GWGCWC 1 cut(s) 1868
BbvI GCAGC 8 cut(s) 172, 270, 576, 842, 913, 1228, 1627, 1955
BccI CCATC 8 cut(s) 56, 287, 349, 356, 1411, 1465, 1540, 1563
BceAI ACGGC 3 cut(s) 385, 1580, 2095
BciT130I CCWGG 6 cut(s) 202, 234, 898, 1093, 1290, 1760
BclI TGATCA 2 cut(s) 244, 2064
BcnI CCSGG 1 cut(s) 496
BcoDI GTCTC 4 cut(s) 80, 1240, 1588, 1932
BcuI ACTAGT 1 cut(s) 1034
BfaI CTAG 8 cut(s) 636, 873, 1035, 1134, 1443, 1464, 1536, 2006
BfmI CTRYAG 3 cut(s) 915, 1167, 1299
BfrI CTTAAG 1 cut(s) 733
BfuAI ACCTGC 1 cut(s) 1240
BlpI GCTNAGC 1 cut(s) 1636
Bme1390I CCNGG 7 cut(s) 202, 234, 496, 898, 1093, 1290, 1760
Bme18I GGWCC 3 cut(s) 236, 572, 1181
BmeRI GACNNNNNGTC 1 cut(s) 1816
BmeT110I CYCGRG 1 cut(s) 1320
BmgT120I GGNCC 7 cut(s) 17, 236, 572, 1181, 1328, 1475, 1499
BmiI GGNNCC 2 cut(s) 631, 2011
BmrFI CCNGG 7 cut(s) 202, 234, 496, 898, 1093, 1290, 1760
BmsI GCATC 4 cut(s) 1108, 1152, 1795, 1957
BpmI CTGGAG 1 cut(s) 993
Bpu1102I GCTNAGC 1 cut(s) 1636
BpuEI CTTGAG 3 cut(s) 174, 273, 891
BpuMI CCSGG 1 cut(s) 496
Bsa29I ATCGAT 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 1280
BsaBI GATNNNNATC 2 cut(s) 1024, 1785
BsaHI GRCGYC 2 cut(s) 89, 2108
BsaJI CCNNGG 5 cut(s) 495, 896, 1288, 1427, 1759
Bsc4I CCNNNNNNNGG 5 cut(s) 14, 207, 293, 590, 1325
Bse118I RCCGGY 1 cut(s) 1252
Bse1I ACTGG 6 cut(s) 127, 834, 964, 1054, 1140, 1873
Bse3DI GCAATG 2 cut(s) 1905, 2060
Bse8I GATNNNNATC 2 cut(s) 1024, 1785
BseBI CCWGG 6 cut(s) 202, 234, 898, 1093, 1290, 1760
BseCI ATCGAT 1 cut(s) 71
BseDI CCNNGG 5 cut(s) 495, 896, 1288, 1427, 1759
BseGI GGATG 2 cut(s) 1123, 1167
BseJI GATNNNNATC 2 cut(s) 1024, 1785
BseLI CCNNNNNNNGG 5 cut(s) 14, 207, 293, 590, 1325
BseMI GCAATG 2 cut(s) 1905, 2060
BseMII CTCAG 4 cut(s) 315, 555, 1394, 1665
BseNI ACTGG 6 cut(s) 127, 834, 964, 1054, 1140, 1873
BseRI GAGGAG 4 cut(s) 1368, 1645, 1722, 1841
BseXI GCAGC 8 cut(s) 172, 270, 576, 842, 913, 1228, 1627, 1955
BseYI CCCAGC 2 cut(s) 554, 1081
Bsh1236I CGCG 1 cut(s) 414
BshFI GGCC 7 cut(s) 19, 551, 786, 1330, 1476, 1500, 1872
BshVI ATCGAT 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 1868
BsiHKCI CYCGRG 1 cut(s) 1320
BsiSI CCGG 3 cut(s) 495, 787, 1253
BslFI GGGAC 2 cut(s) 939, 955
BslI CCNNNNNNNGG 5 cut(s) 14, 207, 293, 590, 1325
BsmAI GTCTC 4 cut(s) 80, 1240, 1588, 1932
BsmBI CGTCTC 2 cut(s) 80, 1932
BsmFI GGGAC 2 cut(s) 939, 955
BsmI GAATGC 2 cut(s) 920, 1390
BsnI GGCC 7 cut(s) 19, 551, 786, 1330, 1476, 1500, 1872
BsoBI CYCGRG 1 cut(s) 1320
Bsp1286I GDGCHC 1 cut(s) 1868
Bsp1720I GCTNAGC 1 cut(s) 1636
BspACI CCGC 5 cut(s) 414, 552, 667, 1494, 1798
BspANI GGCC 7 cut(s) 19, 551, 786, 1330, 1476, 1500, 1872
BspCNI CTCAG 4 cut(s) 316, 554, 1393, 1666
BspDI ATCGAT 1 cut(s) 71
BspFNI CGCG 1 cut(s) 414
BspHI TCATGA 1 cut(s) 2061
BspLI GGNNCC 2 cut(s) 631, 2011
BspMAI CTGCAG 1 cut(s) 1171
BspMI ACCTGC 1 cut(s) 1240
BspPI GGATC 6 cut(s) 328, 624, 637, 814, 998, 1739
BspQI GCTCTTC 1 cut(s) 814
BspTI CTTAAG 1 cut(s) 733
BsrDI GCAATG 2 cut(s) 1905, 2060
BsrFI RCCGGY 1 cut(s) 1252
BsrI ACTGG 6 cut(s) 127, 834, 964, 1054, 1140, 1873
BssAI RCCGGY 1 cut(s) 1252
BssECI CCNNGG 5 cut(s) 495, 896, 1288, 1427, 1759
BssNI GRCGYC 2 cut(s) 89, 2108
BssT1I CCWWGG 1 cut(s) 1427
Bst2UI CCWGG 6 cut(s) 202, 234, 898, 1093, 1290, 1760
Bst4CI ACNGT 3 cut(s) 1188, 1649, 2045
Bst6I CTCTTC 5 cut(s) 814, 1485, 1699, 1875, 1977
BstACI GRCGYC 2 cut(s) 89, 2108
BstAFI CTTAAG 1 cut(s) 733
BstAPI GCANNNNNTGC 1 cut(s) 836
BstBAI YACGTR 1 cut(s) 1280
BstC8I GCNNGC 6 cut(s) 379, 699, 880, 1167, 1498, 1695
BstDEI CTNAG 6 cut(s) 324, 541, 1380, 1636, 1674, 1874
BstENI CCTNNNNNAGG 2 cut(s) 205, 1323
BstF5I GGATG 2 cut(s) 1123, 1167
BstFNI CGCG 1 cut(s) 414
BstHHI GCGC 1 cut(s) 414
BstMAI GTCTC 4 cut(s) 80, 1240, 1588, 1932
BstMWI GCNNNNNNNGC 6 cut(s) 698, 830, 836, 1118, 1171, 1783
BstNI CCWGG 6 cut(s) 202, 234, 898, 1093, 1290, 1760
BstNSI RCATGY 5 cut(s) 446, 701, 1697, 1777, 1819
BstSCI CCNGG 7 cut(s) 200, 232, 494, 896, 1091, 1288, 1758
BstSFI CTRYAG 3 cut(s) 915, 1167, 1299
BstUI CGCG 1 cut(s) 414
BstV1I GCAGC 8 cut(s) 172, 270, 576, 842, 913, 1228, 1627, 1955
BstX2I RGATCY 4 cut(s) 320, 629, 806, 1003
BstXI CCANNNNNNTGG 1 cut(s) 311
BstYI RGATCY 4 cut(s) 320, 629, 806, 1003
Bsu15I ATCGAT 1 cut(s) 71
BsuRI GGCC 7 cut(s) 19, 551, 786, 1330, 1476, 1500, 1872
BsuTUI ATCGAT 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 1541
BtsCI GGATG 2 cut(s) 1123, 1167
BtsI GCAGTG 1 cut(s) 574
BtsIMutI CAGTG 8 cut(s) 120, 574, 841, 858, 957, 1047, 1193, 1866
BveI ACCTGC 1 cut(s) 1240
Cac8I GCNNGC 6 cut(s) 379, 699, 880, 1167, 1498, 1695
CaiI CAGNNNCTG 1 cut(s) 122
CciI TCATGA 1 cut(s) 2061
CfoI GCGC 1 cut(s) 414
Cfr10I RCCGGY 1 cut(s) 1252
Cfr13I GGNCC 7 cut(s) 17, 236, 572, 1181, 1328, 1475, 1499
ClaI ATCGAT 1 cut(s) 71
CseI GACGC 1 cut(s) 1607
CsiI ACCWGGT 2 cut(s) 200, 232
Csp6I GTAC 3 cut(s) 141, 297, 950
CviQI GTAC 3 cut(s) 141, 297, 950
DdeI CTNAG 6 cut(s) 324, 541, 1380, 1636, 1674, 1874
DraIII CACNNNGTG 1 cut(s) 938
DriI GACNNNNNGTC 1 cut(s) 1816
EaeI YGGCCR 1 cut(s) 784
Eam1104I CTCTTC 5 cut(s) 814, 1485, 1699, 1875, 1977
Eam1105I GACNNNNNGTC 1 cut(s) 1816
EarI CTCTTC 5 cut(s) 814, 1485, 1699, 1875, 1977
Eco130I CCWWGG 1 cut(s) 1427
Eco47I GGWCC 3 cut(s) 236, 572, 1181
Eco57I CTGAAG 2 cut(s) 66, 132
Eco72I CACGTG 1 cut(s) 1280
Eco88I CYCGRG 1 cut(s) 1320
EcoNI CCTNNNNNAGG 2 cut(s) 205, 1323
EcoO109I RGGNCCY 2 cut(s) 236, 1499
EcoRI GAATTC 1 cut(s) 2030
EcoRII CCWGG 6 cut(s) 200, 232, 896, 1091, 1288, 1758
EcoT14I CCWWGG 1 cut(s) 1427
EcoT22I ATGCAT 1 cut(s) 1779
ErhI CCWWGG 1 cut(s) 1427
Esp3I CGTCTC 2 cut(s) 80, 1932
FaqI GGGAC 2 cut(s) 939, 955
FauI CCCGC 1 cut(s) 1501
FbaI TGATCA 2 cut(s) 244, 2064
FblI GTMKAC 1 cut(s) 41
FokI GGATG 2 cut(s) 1130, 1174
FspBI CTAG 8 cut(s) 636, 873, 1035, 1134, 1443, 1464, 1536, 2006
GlaI GCGC 1 cut(s) 413
GsaI CCCAGC 2 cut(s) 558, 1085
GsuI CTGGAG 1 cut(s) 993
HaeIII GGCC 7 cut(s) 19, 551, 786, 1330, 1476, 1500, 1872
HapII CCGG 3 cut(s) 495, 787, 1253
HgaI GACGC 1 cut(s) 1607
HhaI GCGC 1 cut(s) 414
Hin1I GRCGYC 2 cut(s) 89, 2108
Hin6I GCGC 1 cut(s) 412
HinP1I GCGC 1 cut(s) 412
HpaII CCGG 3 cut(s) 495, 787, 1253
HphI GGTGA 8 cut(s) 77, 269, 293, 665, 1064, 1534, 1868, 2009
Hpy166II GTNNAC 5 cut(s) 42, 143, 1075, 1810, 2024
Hpy188I TCNGA 9 cut(s) 244, 325, 345, 678, 1062, 1383, 1417, 1675, 1953
Hpy8I GTNNAC 5 cut(s) 42, 143, 1075, 1810, 2024
HpyCH4III ACNGT 3 cut(s) 1188, 1649, 2045
HpyCH4IV ACGT 4 cut(s) 89, 952, 1279, 1681
HpyF10VI GCNNNNNNNGC 6 cut(s) 698, 830, 836, 1118, 1171, 1783
HpyF3I CTNAG 6 cut(s) 324, 541, 1380, 1636, 1674, 1874
HpySE526I ACGT 4 cut(s) 89, 952, 1279, 1681
Hsp92I GRCGYC 2 cut(s) 89, 2108
HspAI GCGC 1 cut(s) 412
Ksp22I TGATCA 2 cut(s) 244, 2064
LguI GCTCTTC 1 cut(s) 814
LmnI GCTCC 3 cut(s) 230, 1632, 1828
Lsp1109I GCAGC 8 cut(s) 172, 270, 576, 842, 913, 1228, 1627, 1955
LweI GCATC 4 cut(s) 1108, 1152, 1795, 1957
MabI ACCWGGT 2 cut(s) 200, 232
MaeI CTAG 8 cut(s) 636, 873, 1035, 1134, 1443, 1464, 1536, 2006
MaeII ACGT 4 cut(s) 89, 952, 1279, 1681
MaeIII GTNAC 5 cut(s) 275, 383, 769, 1522, 1619
MboII GAAGA 8 cut(s) 831, 1472, 1584, 1716, 1892, 1914, 1926, 1994
MflI RGATCY 4 cut(s) 320, 629, 806, 1003
MhlI GDGCHC 1 cut(s) 1868
MluCI AATT 5 cut(s) 253, 475, 1029, 1270, 2030
MlyI GAGTC 1 cut(s) 920
Mph1103I ATGCAT 1 cut(s) 1779
MseI TTAA 4 cut(s) 734, 890, 986, 2102
MslI CAYNNNNRTG 1 cut(s) 1107
MspA1I CMGCKG 2 cut(s) 283, 554
MspCI CTTAAG 1 cut(s) 733
MspI CCGG 3 cut(s) 495, 787, 1253
MspR9I CCNGG 7 cut(s) 202, 234, 496, 898, 1093, 1290, 1760
Mva1269I GAATGC 2 cut(s) 920, 1390
MvaI CCWGG 6 cut(s) 202, 234, 898, 1093, 1290, 1760
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 6 cut(s) 698, 830, 836, 1118, 1171, 1783
NciI CCSGG 1 cut(s) 496
NlaIV GGNNCC 2 cut(s) 631, 2011
NmeAIII GCCGAG 1 cut(s) 1356
NmuCI GTSAC 4 cut(s) 275, 383, 1522, 1619
NsiI ATGCAT 1 cut(s) 1779
NspI RCATGY 5 cut(s) 446, 701, 1697, 1777, 1819
PaeI GCATGC 2 cut(s) 701, 1697
PaeR7I CTCGAG 1 cut(s) 1320
PagI TCATGA 1 cut(s) 2061
PaqCI CACCTGC 1 cut(s) 1240
PciI ACATGT 1 cut(s) 1815
PciSI GCTCTTC 1 cut(s) 814
PctI GAATGC 2 cut(s) 920, 1390
PflMI CCANNNNNTGG 1 cut(s) 590
PleI GAGTC 1 cut(s) 919
PmaCI CACGTG 1 cut(s) 1280
PmlI CACGTG 1 cut(s) 1280
PpsI GAGTC 1 cut(s) 919
Ppu21I YACGTR 1 cut(s) 1280
PpuMI RGGWCCY 1 cut(s) 236
PscI ACATGT 1 cut(s) 1815
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 6 cut(s) 200, 232, 896, 1091, 1288, 1758
PspCI CACGTG 1 cut(s) 1280
PspFI CCCAGC 2 cut(s) 554, 1081
PspGI CCWGG 6 cut(s) 200, 232, 896, 1091, 1288, 1758
PspN4I GGNNCC 2 cut(s) 631, 2011
PspPI GGNCC 7 cut(s) 17, 236, 572, 1181, 1328, 1475, 1499
PspPPI RGGWCCY 1 cut(s) 236
PspXI VCTCGAGB 1 cut(s) 1320
PsrI GAACNNNNNNTAC 2 cut(s) 19, 51
PstI CTGCAG 1 cut(s) 1171
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 4 cut(s) 320, 629, 806, 1003
PvuII CAGCTG 1 cut(s) 283
RsaI GTAC 3 cut(s) 142, 298, 951
RsaNI GTAC 3 cut(s) 141, 297, 950
RseI CAYNNNNRTG 1 cut(s) 1107
SapI GCTCTTC 1 cut(s) 814
SaqAI TTAA 4 cut(s) 734, 890, 986, 2102
Sau96I GGNCC 7 cut(s) 17, 236, 572, 1181, 1328, 1475, 1499
SchI GAGTC 1 cut(s) 920
ScrFI CCNGG 7 cut(s) 202, 234, 496, 898, 1093, 1290, 1760
SduI GDGCHC 1 cut(s) 1868
SexAI ACCWGGT 2 cut(s) 200, 232
SfaNI GCATC 4 cut(s) 1108, 1152, 1795, 1957
SfcI CTRYAG 3 cut(s) 915, 1167, 1299
Sfr274I CTCGAG 1 cut(s) 1320
SinI GGWCC 3 cut(s) 236, 572, 1181
SlaI CTCGAG 1 cut(s) 1320
SmiMI CAYNNNNRTG 1 cut(s) 1107
SmlI CTYRAG 5 cut(s) 189, 288, 733, 906, 1320
SmoI CTYRAG 5 cut(s) 189, 288, 733, 906, 1320
SpeI ACTAGT 1 cut(s) 1034
SphI GCATGC 2 cut(s) 701, 1697
Sse9I AATT 5 cut(s) 253, 475, 1029, 1270, 2030
SsiI CCGC 5 cut(s) 414, 552, 667, 1494, 1798
SspMI CTAG 8 cut(s) 636, 873, 1035, 1134, 1443, 1464, 1536, 2006
StyD4I CCNGG 7 cut(s) 200, 232, 494, 896, 1091, 1288, 1758
StyI CCWWGG 1 cut(s) 1427
TaaI ACNGT 3 cut(s) 1188, 1649, 2045
TaiI ACGT 4 cut(s) 92, 955, 1282, 1684
TaqI TCGA 5 cut(s) 71, 173, 1321, 1406, 1743
TaqII GACCGA 1 cut(s) 2108
TasI AATT 5 cut(s) 253, 475, 1029, 1270, 2030
TatI WGTACW 1 cut(s) 140
TauI GCSGC 2 cut(s) 554, 1801
Tru1I TTAA 4 cut(s) 734, 890, 986, 2102
Tru9I TTAA 4 cut(s) 734, 890, 986, 2102
TscAI CASTG 8 cut(s) 127, 574, 841, 865, 964, 1054, 1193, 1873
TseFI GTSAC 4 cut(s) 275, 383, 1522, 1619
TseI GCWGC 8 cut(s) 185, 283, 564, 830, 901, 1216, 1640, 1968
Tsp45I GTSAC 4 cut(s) 275, 383, 1522, 1619
TspDTI ATGAA 9 cut(s) 17, 362, 519, 833, 1284, 1334, 1617, 1916, 2043
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 8 cut(s) 127, 574, 841, 865, 964, 1054, 1193, 1873
Van91I CCANNNNNTGG 1 cut(s) 590
Vha464I CTTAAG 1 cut(s) 733
VpaK11BI GGWCC 3 cut(s) 236, 572, 1181
XagI CCTNNNNNAGG 2 cut(s) 205, 1323
XapI RAATTY 2 cut(s) 1270, 2030
XbaI TCTAGA 2 cut(s) 872, 1133
XceI RCATGY 5 cut(s) 446, 701, 1697, 1777, 1819
XcmI CCANNNNNNNNNTGG 1 cut(s) 591
XhoI CTCGAG 1 cut(s) 1320
XmiI GTMKAC 1 cut(s) 41
XspI CTAG 8 cut(s) 636, 873, 1035, 1134, 1443, 1464, 1536, 2006
ZraI GACGTC 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 1779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.