Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002668

Physical Location & Seq

Genomic Coordinates Reverse (-)

17433439 .. 17435837

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1083400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTGGCGTTAATGATTCGTCAAGTTTTGAATGCTATGCGTAGGGGTGAGAACTTACGCGTCGAGGATTATATGCTCTTTGACCCATTCATATATCATGGTATGGCTGAGATGCATGACAGGCATAGAGACATGCGCCTTGATGTTGATAACATGTCTTACGAGGAACTGCTGGCATTGGGGGAGCGTATAGGAGATGTTAGCACTGGACTGAGTGAGGAGACTATTATGAAGTGCATGAAACAGCGAAAATTTCTTGCTATTTCAGAAGAATCCTCAGCAGATATGGAACCGTGCTGTGTCTGTCAGGAGGTATATGCTGATGAGGATGATATCGGCACACTAGATTGTGGGCACGACTTCCACACCAGTTGCATCAAACAATGGCTAATGCAGAAGAATCTGTGCCCGATTTGTAAAACAACAGCCCTGCTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0007568 GO:0008045 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009791 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010228 GO:0010259 GO:0010468 GO:0010498 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0021675 GO:0022008 GO:0022414 GO:0023051 GO:0023056 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0030510 GO:0030513 GO:0031175 GO:0031323 GO:0031326 GO:0032446 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0032991 GO:0035107 GO:0035108 GO:0035136 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048468 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048736 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051603 GO:0060173 GO:0060255 GO:0060384 GO:0061061 GO:0061458 GO:0061564 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090092 GO:0090100 GO:0090287 GO:0097485 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

147

Amino Acids

16.85

Weight (kDa)

4.77

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	96 - 140	1.4e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	99 - 140	4.4e-12	Ring finger domain
zf-C3HC4_2	PF13923	99 - 139	1.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	99 - 139	1.3e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15530 AT2G15530 AT2G15530 AT2G15530 AT2G15530 AT2G15530 AT2G15530 AT4G34040
fragaria_vesca	FvH4_2g05790 FvH4_2g05790 FvH4_2g05790 FvH4_2g05790 FvH4_2g05790 FvH4_2g05790 FvH4_2g05790
malus_domestica	MD00G1050100.v1.1 MD05G1083400.v1.1
prunus_persica	Prupe.8G127800_v2.0.a1 Prupe.8G127800_v2.0.a1 Prupe.8G127800_v2.0.a1 Prupe.8G127800_v2.0.a1
pyrus_communis	pycom05g08030 pycom10g08090
rosa_chinensis	RchiOBHm_Chr6g0257951
rosa_laevigata	RLG00000014738
rosa_multiflora	Rmu_sc0000077.1_g000045
rosa_roxburghii	Rroxscaffold_7G00209060
rosa_rugosa	Rorug05G0566000 Rorug05G0566100 Rorug05G0566100 Rorug05G0566200 Rorug05G0566300 Rorug05G0566300 Rorug05G0566300 Rorug05G0566400
rosa_samantha	Rh6AG084000 Rh6BG078600 Rh6CG073200 Rh6DG070200
rosa_wichuraiana	Rw6G007550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	251
AflIII	ACRYGT	2 cut(s)	58, 153
AgsI	TTSAA	1 cut(s)	31
Alw26I	GTCTC	2 cut(s)	123, 215
ApoI	RAATTY	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	59
BaeGI	GKGCMC	2 cut(s)	357, 410
BbvCI	CCTCAGC	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	123, 215
BfaI	CTAG	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	291
BmsI	GCATC	2 cut(s)	102, 384
Bpu10I	CCTNAGC	1 cut(s)	277
Bse1I	ACTGG	2 cut(s)	211, 369
BseGI	GGATG	1 cut(s)	334
BseMII	CTCAG	3 cut(s)	99, 203, 291
BseNI	ACTGG	2 cut(s)	211, 369
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	2 cut(s)	357, 410
Bsh1236I	CGCG	1 cut(s)	60
BsmAI	GTCTC	2 cut(s)	123, 215
BsmI	GAATGC	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	357, 410
BspCNI	CTCAG	3 cut(s)	100, 204, 290
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	211, 369
Bst4CI	ACNGT	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	3 cut(s)	108, 212, 277
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	138
BstMAI	GTCTC	2 cut(s)	123, 215
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNSI	RCATGY	2 cut(s)	136, 157
BstSLI	GKGCMC	2 cut(s)	357, 410
BstUI	CGCG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	138
CseI	GACGC	1 cut(s)	49
CspCI	CAANNNNNGTGG	2 cut(s)	353, 388
CviAII	CATG	6 cut(s)	98, 116, 133, 154, 238, 438
CviJI	RGCY	3 cut(s)	107, 388, 428
CviKI_1	RGCY	3 cut(s)	107, 388, 428
DdeI	CTNAG	3 cut(s)	108, 212, 277
Eco32I	GATATC	1 cut(s)	334
EcoRV	GATATC	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	117
FaeI	CATG	6 cut(s)	101, 119, 136, 157, 241, 441
FatI	CATG	6 cut(s)	97, 115, 132, 153, 237, 437
FokI	GGATG	1 cut(s)	341
FspBI	CTAG	1 cut(s)	344
GlaI	GCGC	1 cut(s)	137
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	6 cut(s)	101, 119, 136, 157, 241, 441
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HinfI	GANTC	3 cut(s)	16, 272, 400
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	1 cut(s)	308
Hpy99I	CGWCG	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4V	TGCA	4 cut(s)	115, 237, 375, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	3 cut(s)	108, 212, 277
Hsp92II	CATG	6 cut(s)	101, 119, 136, 157, 241, 441
HspAI	GCGC	1 cut(s)	136
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	5 cut(s)	106, 158, 192, 293, 382
LweI	GCATC	2 cut(s)	102, 384
MaeI	CTAG	1 cut(s)	344
MboII	GAAGA	2 cut(s)	281, 409
MhlI	GDGCHC	2 cut(s)	357, 410
MluCI	AATT	1 cut(s)	251
MluI	ACGCGT	1 cut(s)	58
MnlI	CCTC	6 cut(s)	58, 157, 211, 286, 304, 319
Mph1103I	ATGCAT	1 cut(s)	117
MseI	TTAA	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	37
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	121
NlaIII	CATG	6 cut(s)	101, 119, 136, 157, 241, 441
NlaIV	GGNNCC	1 cut(s)	291
NsiI	ATGCAT	1 cut(s)	117
NspI	RCATGY	2 cut(s)	136, 157
PciI	ACATGT	1 cut(s)	153
PctI	GAATGC	1 cut(s)	37
PfeI	GAWTC	3 cut(s)	16, 272, 400
PscI	ACATGT	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	11
SduI	GDGCHC	2 cut(s)	357, 410
SetI	ASST	1 cut(s)	315
SfaNI	GCATC	2 cut(s)	102, 384
Sse9I	AATT	1 cut(s)	251
SspMI	CTAG	1 cut(s)	344
TaaI	ACNGT	1 cut(s)	294
TaqI	TCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	251
TfiI	GAWTC	3 cut(s)	16, 272, 400
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	79, 245, 254
TspRI	CASTG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	2 cut(s)	136, 157
XspI	CTAG	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.