Rorug05G0566000

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002668
Physical Location & Seq
Forward (+)
75936251 .. 75943071
6821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0566000.1

Sequence Viewer

Length: 2001 bp
ATGGAGAGTAGTAAGAAACCCAAATCAAAGACTCCGGCAAAGAAGCCCAAAGACAGTGTTCTTGAGCAGAAATCTCCAGCTGAGTTCTTCGCTGAGAACAAGAACATTGCTGGATTTGATAATCCAGGGAAATGTCTTTATACTACTGTGAGGGAACTTGTGGAGAACTCACTCGATTCGACAGAGTCCATATCTGAGCTTCCTCTGATAGAAATCACAATTGAAGATATTGAGAAAAGCAAGTTCAATTCTATGATAGGTCTTGTTGATCGAGACCGTGTTGATGAGGAACTGTATGATGATCATGAAACGGCTAAGGCTCGTGAGAAACGATTAGCAAAGGAAGCTCAAGCCCAAGAATTACAAGCAAAGAATGCTTCCCTTGGAAAGAAAATCAAAGAGCCTGCAGCTCCAAAGACCATGAAGGGTCGAGGTGGGGCTGCATTTTACAGGGTTACTTGCAAGGATAATGGACGAGGAATGCCACATGATGACATTCCAAATATGTTTGGACGAGTACTGTCTGGGACAAAATATGGCTTGAAGCAGACACGTGGAAAGTTTGGTCTAGGTGCAAAGATGGCATTAATTTGGTCGAAGATGAGTACAGGGCTTCCTATAGATATCTCTTCATCAATGAAGGGCCAAAGTTATAATTCTTTCTGCAGACTGGATATAGATATTCATCGGAACATTCCTCATGTTCATATACATGAAAAACGGGATAGCAAGGATAGGTGGCACGGCGCTGAAATCCAAGTTGTTATTGAGGGAAATTGGACAACTTACCGTTCCAAGATATTGCATTACATGCGACAAATGGCTGTTATCACTCCTTATGCTGAGTTCATTTTTAAATATGTTTCAGATGTTTCTGATAAAAATGTCACCATAAGGTTTGCACGAAGAACTGATGTAATGCCTCCTGTTCCTCTTGAGACAAAGCACCATCCCTCATCTGTTGACTTATTGCTAATCAAACGCCTCATTGAAGAAACTTCAAAGCAGAACCTTTTACAGTTTCTTCAGCATGAATTCGTTAATATAGGAAAATCCTATGCTGAACGACTAATTGGGGAATTGGGTCCTGAGTTCAGTCCGAAGATGCCTGTGAAATCTCTAACTTCTCAGCAAATTGTACGTATCCATCAGTTATTTCGTCAAGCCAAGTTTAATGATCCTAGTGGTGATTGCCTGAGTCCTGCAGGGGAATACAATCTCCGTCTAGGAATTATAAAGGAGCTGCATCCGGAGTTGGTTGCTACTTATTCTGGAAGTGCTCAAGTTTTTGAAGGCCACCCATTCATTGTGGAAGCTGGTGTCAGTGTTGGTGGAAAAGATGTCAAACAAGGTTTGAATATTTTTCGATTTGCAAACCGGATTCCACTTCTTTTTGAGCAAGGTGCTGATGTTGTCACAAGGACCGCCCTTAAGAGAATCAATTGGAGTAGTTACAAGATCAACCAGACTCAGGATAAAGTTGGAGTTTTTGTGAGTATTGTAAGCACAAAGATTCCCTTTAAAGGAACTGGGAAGGAGTATATTGGAGATGATATAACTGAAATAGCTTCTGCTGTCAAGTCTGCCATTCAACACTGTTGCATTCAGCTGAAAACCAAGATAGTGAAGAATATCCAAGCTCGTGAACAAAAAGAGAGAAAACGGAATTTGAGCAAGTATGCTGAAAATGTTGCTGGTGCTGTATGTGGTGTACTGAAGCAAATGCAACAAATACAAGCATCAAAGAAGAGACGTTATGATGGCAAGGAAGCAGAAATACTTAAGAAACTGTCATCTGGGATGATTACAAAAGAAATGGTCAAGGAAAAGCTTGTACAACATGTTGAACAGGTGGACTCGGAGATGGCAATGGAGTTTGCGGCAAATAGTGGAGTGAGCGAGGAACCCAGAGAATGTATATATCTTCAATCATTAGAAGCTGCTGAAGATAACTTTATCGACTTGCATAGTCCCCTATTTGTCTTTCGACTGTTCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0007568 GO:0008045 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009791 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010228 GO:0010259 GO:0010468 GO:0010498 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0021675 GO:0022008 GO:0022414 GO:0023051 GO:0023056 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0030510 GO:0030513 GO:0031175 GO:0031323 GO:0031326 GO:0032446 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0032991 GO:0035107 GO:0035108 GO:0035136 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048468 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048736 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051603 GO:0060173 GO:0060255 GO:0060384 GO:0061061 GO:0061458 GO:0061564 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090092 GO:0090100 GO:0090287 GO:0097485 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

666

Amino Acids

75.09

Weight (kDa)

9.13

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Topo-VIb_trans PF09239 394 - 553 9.2e-56 Topoisomerase VI B subunit, transducer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 654, 1235
AccIII TCCGGA 1 cut(s) 1249
AciI CCGC 2 cut(s) 1425, 1880
AclWI GGATC 1 cut(s) 1172
AcsI RAATTY 2 cut(s) 1034, 1666
AcuI CTGAAG 3 cut(s) 1010, 1736, 1965
AcvI CACGTG 1 cut(s) 554
AfaI GTAC 5 cut(s) 519, 607, 1140, 1713, 1836
AfiI CCNNNNNNNGG 2 cut(s) 1471, 1523
AflII CTTAAG 2 cut(s) 1430, 1781
AflIII ACRYGT 2 cut(s) 551, 1840
AjnI CCWGG 1 cut(s) 124
AjuI GAANNNNNNNTTGG 2 cut(s) 1056, 1088
Alw21I GWGCWC 1 cut(s) 1282
Alw26I GTCTC 3 cut(s) 267, 932, 1744
AlwI GGATC 1 cut(s) 1172
Aor13HI TCCGGA 1 cut(s) 1249
AoxI GGCC 2 cut(s) 643, 1294
ApeKI GCWGC 4 cut(s) 407, 440, 1243, 1940
ApoI RAATTY 2 cut(s) 1034, 1666
AseI ATTAAT 1 cut(s) 587
AspLEI GCGC 1 cut(s) 749
AspS9I GGNCC 3 cut(s) 643, 1085, 1422
AsuHPI GGTGA 2 cut(s) 880, 1199
AvaII GGWCC 2 cut(s) 1085, 1422
BarI GAAGNNNNNNTAC 2 cut(s) 1761, 1793
BauI CACGAG 2 cut(s) 321, 1641
BbrPI CACGTG 1 cut(s) 554
Bbv12I GWGCWC 1 cut(s) 1282
BbvI GCAGC 4 cut(s) 419, 427, 1230, 1927
BccI CCATC 5 cut(s) 574, 957, 1155, 1754, 1858
BceAI ACGGC 2 cut(s) 327, 760
BcgI CGANNNNNNTGC 1 cut(s) 1977
BciT130I CCWGG 1 cut(s) 126
BciVI GTATCC 1 cut(s) 1154
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 3 cut(s) 267, 932, 1744
BfaI CTAG 4 cut(s) 569, 1182, 1226, 1999
BfmI CTRYAG 4 cut(s) 405, 618, 664, 1203
BfoI RGCGCY 1 cut(s) 750
BfrI CTTAAG 2 cut(s) 1430, 1781
BfuI GTATCC 1 cut(s) 1154
BisI GCNGC 5 cut(s) 408, 441, 1244, 1881, 1941
BlsI GCNGC 5 cut(s) 409, 442, 1245, 1882, 1942
BmcAI AGTACT 1 cut(s) 519
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 2 cut(s) 1085, 1422
BmgT120I GGNCC 3 cut(s) 643, 1085, 1422
BmiI GGNNCC 2 cut(s) 1086, 1905
BmrFI CCNGG 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 1539
BmsI GCATC 3 cut(s) 1095, 1255, 1748
BmuI ACTGGG 1 cut(s) 1539
BpmI CTGGAG 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 4 cut(s) 83, 333, 956, 1266
BsaAI YACGTR 2 cut(s) 554, 1142
BsaBI GATNNNNATC 2 cut(s) 212, 684
BsaI GGTCTC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 125, 382
BsaWI WCCGGW 2 cut(s) 1249, 1377
BsaXI ACNNNNNCTCC 2 cut(s) 1476, 1506
Bsc4I CCNNNNNNNGG 2 cut(s) 1471, 1523
Bse1I ACTGG 2 cut(s) 675, 1534
Bse3DI GCAATG 2 cut(s) 105, 1875
Bse8I GATNNNNATC 2 cut(s) 212, 684
BseAI TCCGGA 1 cut(s) 1249
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 125, 382
BseGI GGATG 3 cut(s) 949, 1246, 1806
BseJI GATNNNNATC 2 cut(s) 212, 684
BseLI CCNNNNNNNGG 2 cut(s) 1471, 1523
BseMI GCAATG 2 cut(s) 105, 1875
BseMII CTCAG 8 cut(s) 72, 84, 186, 834, 1080, 1142, 1187, 1484
BseNI ACTGG 2 cut(s) 675, 1534
BseXI GCAGC 4 cut(s) 419, 427, 1230, 1927
BshFI GGCC 2 cut(s) 645, 1296
BsiHKAI GWGCWC 1 cut(s) 1282
BsiSI CCGG 3 cut(s) 35, 1250, 1378
BslFI GGGAC 2 cut(s) 541, 1956
BslI CCNNNNNNNGG 2 cut(s) 1471, 1523
BsmAI GTCTC 3 cut(s) 267, 932, 1744
BsmBI CGTCTC 1 cut(s) 1744
BsmFI GGGAC 2 cut(s) 541, 1956
BsmI GAATGC 3 cut(s) 379, 486, 1602
BsnI GGCC 2 cut(s) 645, 1296
Bso31I GGTCTC 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 1282
Bsp13I TCCGGA 1 cut(s) 1249
Bsp1407I TGTACA 1 cut(s) 1834
Bsp143I GATC 4 cut(s) 268, 301, 1177, 1458
BspACI CCGC 2 cut(s) 1425, 1880
BspANI GGCC 2 cut(s) 645, 1296
BspCNI CTCAG 8 cut(s) 73, 85, 187, 835, 1081, 1141, 1188, 1483
BspEI TCCGGA 1 cut(s) 1249
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 1086, 1905
BspMAI CTGCAG 3 cut(s) 409, 668, 1207
BspPI GGATC 1 cut(s) 1172
BspTI CTTAAG 2 cut(s) 1430, 1781
BspTNI GGTCTC 1 cut(s) 267
BsrDI GCAATG 2 cut(s) 105, 1875
BsrGI TGTACA 1 cut(s) 1834
BsrI ACTGG 2 cut(s) 675, 1534
BssECI CCNNGG 2 cut(s) 125, 382
BssMI GATC 4 cut(s) 268, 301, 1177, 1458
BssSI CACGAG 2 cut(s) 321, 1641
BssT1I CCWWGG 1 cut(s) 382
Bst2BI CACGAG 2 cut(s) 321, 1641
Bst2UI CCWGG 1 cut(s) 126
Bst6I CTCTTC 2 cut(s) 634, 1742
BstAFI CTTAAG 2 cut(s) 1430, 1781
BstAPI GCANNNNNTGC 2 cut(s) 374, 811
BstAUI TGTACA 1 cut(s) 1834
BstBAI YACGTR 2 cut(s) 554, 1142
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 9 cut(s) 81, 93, 195, 315, 843, 1089, 1128, 1196, 1470
BstF5I GGATG 3 cut(s) 949, 1246, 1806
BstH2I RGCGCY 1 cut(s) 750
BstHHI GCGC 1 cut(s) 749
BstKTI GATC 4 cut(s) 271, 304, 1180, 1461
BstMAI GTCTC 3 cut(s) 267, 932, 1744
BstMBI GATC 4 cut(s) 268, 301, 1177, 1458
BstMWI GCNNNNNNNGC 4 cut(s) 344, 374, 581, 811
BstNI CCWGG 1 cut(s) 126
BstNSI RCATGY 2 cut(s) 814, 1844
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 4 cut(s) 405, 618, 664, 1203
BstSNI TACGTA 1 cut(s) 1142
BstV1I GCAGC 4 cut(s) 419, 427, 1230, 1927
BsuI GTATCC 1 cut(s) 1154
BsuRI GGCC 2 cut(s) 645, 1296
BtsCI GGATG 3 cut(s) 949, 1246, 1806
BtsIMutI CAGTG 3 cut(s) 61, 1330, 1594
Cac8I GCNNGC 1 cut(s) 405
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 749
Cfr13I GGNCC 3 cut(s) 643, 1085, 1422
Csp6I GTAC 5 cut(s) 518, 606, 1139, 1712, 1835
CviAII CATG 8 cut(s) 305, 421, 488, 701, 713, 811, 1031, 1841
CviQI GTAC 5 cut(s) 518, 606, 1139, 1712, 1835
DdeI CTNAG 9 cut(s) 81, 93, 195, 315, 843, 1089, 1128, 1196, 1470
DpnI GATC 4 cut(s) 270, 303, 1179, 1460
DpnII GATC 4 cut(s) 268, 301, 1177, 1458
DraI TTTAAA 2 cut(s) 856, 1522
Eam1104I CTCTTC 2 cut(s) 634, 1742
EarI CTCTTC 2 cut(s) 634, 1742
Eco105I TACGTA 1 cut(s) 1142
Eco130I CCWWGG 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 267
Eco32I GATATC 1 cut(s) 625
Eco47I GGWCC 2 cut(s) 1085, 1422
Eco57I CTGAAG 3 cut(s) 1010, 1736, 1965
Eco72I CACGTG 1 cut(s) 554
EcoO109I RGGNCCY 1 cut(s) 1085
EcoRI GAATTC 1 cut(s) 1034
EcoRII CCWGG 1 cut(s) 124
EcoRV GATATC 1 cut(s) 625
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
Esp3I CGTCTC 1 cut(s) 1744
FaeI CATG 8 cut(s) 308, 424, 491, 704, 716, 814, 1034, 1844
FalI AAGNNNNNCTT 2 cut(s) 1502, 1534
FaqI GGGAC 2 cut(s) 541, 1956
FatI CATG 8 cut(s) 304, 420, 487, 700, 712, 810, 1030, 1840
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 5 cut(s) 408, 441, 1244, 1881, 1941
FokI GGATG 3 cut(s) 936, 1233, 1813
Fsp4HI GCNGC 5 cut(s) 408, 441, 1244, 1881, 1941
FspBI CTAG 4 cut(s) 569, 1182, 1226, 1999
GlaI GCGC 1 cut(s) 748
GluI GCNGC 5 cut(s) 408, 441, 1244, 1881, 1941
GsuI CTGGAG 1 cut(s) 60
HaeII RGCGCY 1 cut(s) 750
HaeIII GGCC 2 cut(s) 645, 1296
HapII CCGG 3 cut(s) 35, 1250, 1378
HhaI GCGC 1 cut(s) 749
Hin1II CATG 8 cut(s) 308, 424, 491, 704, 716, 814, 1034, 1844
Hin6I GCGC 1 cut(s) 747
HinP1I GCGC 1 cut(s) 747
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HindIII AAGCTT 1 cut(s) 1829
HinfI GANTC 9 cut(s) 31, 176, 185, 1198, 1381, 1437, 1468, 1513, 1856
HpaII CCGG 3 cut(s) 35, 1250, 1378
HphI GGTGA 2 cut(s) 880, 1199
Hpy166II GTNNAC 4 cut(s) 964, 1646, 1712, 1855
Hpy188I TCNGA 7 cut(s) 196, 207, 690, 868, 877, 1101, 1861
Hpy8I GTNNAC 4 cut(s) 964, 1646, 1712, 1855
HpyAV CCTTC 4 cut(s) 418, 634, 1286, 1528
HpyCH4IV ACGT 3 cut(s) 553, 1141, 1753
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 374, 581, 811
HpyF3I CTNAG 9 cut(s) 81, 93, 195, 315, 843, 1089, 1128, 1196, 1470
HpySE526I ACGT 3 cut(s) 553, 1141, 1753
Hsp92II CATG 8 cut(s) 308, 424, 491, 704, 716, 814, 1034, 1844
HspAI GCGC 1 cut(s) 747
Kpn2I TCCGGA 1 cut(s) 1249
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 4 cut(s) 268, 301, 1177, 1458
LmnI GCTCC 2 cut(s) 415, 1240
Lsp1109I GCAGC 4 cut(s) 419, 427, 1230, 1927
LweI GCATC 3 cut(s) 1095, 1255, 1748
MaeI CTAG 4 cut(s) 569, 1182, 1226, 1999
MaeII ACGT 3 cut(s) 553, 1141, 1753
MaeIII GTNAC 4 cut(s) 454, 886, 1414, 1451
MalI GATC 4 cut(s) 270, 303, 1179, 1460
MboI GATC 4 cut(s) 268, 301, 1177, 1458
MfeI CAATTG 2 cut(s) 219, 1441
MhlI GDGCHC 1 cut(s) 1282
MlyI GAGTC 5 cut(s) 25, 194, 1207, 1462, 1850
MmeI TCCRAC 1 cut(s) 1462
MroI TCCGGA 1 cut(s) 1249
MseI TTAA 7 cut(s) 587, 855, 1041, 1173, 1431, 1521, 1782
MslI CAYNNNNRTG 1 cut(s) 711
MspA1I CMGCKG 2 cut(s) 80, 1609
MspCI CTTAAG 2 cut(s) 1430, 1781
MspI CCGG 3 cut(s) 35, 1250, 1378
MspR9I CCNGG 1 cut(s) 126
MunI CAATTG 2 cut(s) 219, 1441
Mva1269I GAATGC 3 cut(s) 379, 486, 1602
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 4 cut(s) 344, 374, 581, 811
NdeII GATC 4 cut(s) 268, 301, 1177, 1458
NlaIII CATG 8 cut(s) 308, 424, 491, 704, 716, 814, 1034, 1844
NlaIV GGNNCC 2 cut(s) 1086, 1905
NmuCI GTSAC 2 cut(s) 886, 1414
NspI RCATGY 2 cut(s) 814, 1844
PagI TCATGA 1 cut(s) 304
PciI ACATGT 1 cut(s) 1840
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PctI GAATGC 3 cut(s) 379, 486, 1602
PfeI GAWTC 4 cut(s) 176, 1381, 1437, 1513
PflFI GACNNNGTC 1 cut(s) 184
PkrI GCNGC 5 cut(s) 409, 442, 1245, 1882, 1942
PleI GAGTC 5 cut(s) 25, 193, 1206, 1462, 1850
PmaCI CACGTG 1 cut(s) 554
PmlI CACGTG 1 cut(s) 554
PpsI GAGTC 5 cut(s) 25, 193, 1206, 1462, 1850
Ppu21I YACGTR 2 cut(s) 554, 1142
PpuMI RGGWCCY 1 cut(s) 1085
PscI ACATGT 1 cut(s) 1840
PshBI ATTAAT 1 cut(s) 587
PsiI TTATAA 2 cut(s) 654, 1235
Psp5II RGGWCCY 1 cut(s) 1085
Psp6I CCWGG 1 cut(s) 124
PspCI CACGTG 1 cut(s) 554
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 1086, 1905
PspPI GGNCC 3 cut(s) 643, 1085, 1422
PspPPI RGGWCCY 1 cut(s) 1085
PstI CTGCAG 3 cut(s) 409, 668, 1207
PsyI GACNNNGTC 1 cut(s) 184
PvuII CAGCTG 2 cut(s) 80, 1609
RsaI GTAC 5 cut(s) 519, 607, 1140, 1713, 1836
RsaNI GTAC 5 cut(s) 518, 606, 1139, 1712, 1835
RseI CAYNNNNRTG 1 cut(s) 711
SaqAI TTAA 7 cut(s) 587, 855, 1041, 1173, 1431, 1521, 1782
SatI GCNGC 5 cut(s) 408, 441, 1244, 1881, 1941
Sau3AI GATC 4 cut(s) 268, 301, 1177, 1458
Sau96I GGNCC 3 cut(s) 643, 1085, 1422
SbfI CCTGCAGG 1 cut(s) 1207
ScaI AGTACT 1 cut(s) 519
SchI GAGTC 5 cut(s) 25, 194, 1207, 1462, 1850
ScrFI CCNGG 1 cut(s) 126
SdaI CCTGCAGG 1 cut(s) 1207
SduI GDGCHC 1 cut(s) 1282
SfaNI GCATC 3 cut(s) 1095, 1255, 1748
SfcI CTRYAG 4 cut(s) 405, 618, 664, 1203
SinI GGWCC 2 cut(s) 1085, 1422
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 6 cut(s) 62, 348, 935, 1281, 1430, 1781
SmoI CTYRAG 6 cut(s) 62, 348, 935, 1281, 1430, 1781
SnaBI TACGTA 1 cut(s) 1142
Sse8387I CCTGCAGG 1 cut(s) 1207
SsiI CCGC 2 cut(s) 1425, 1880
SspI AATATT 1 cut(s) 1360
SspMI CTAG 4 cut(s) 569, 1182, 1226, 1999
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 1 cut(s) 382
TaiI ACGT 3 cut(s) 556, 1144, 1756
TaqI TCGA 8 cut(s) 174, 179, 271, 430, 596, 1366, 1959, 1987
TatI WGTACW 4 cut(s) 517, 605, 1711, 1834
TauI GCSGC 1 cut(s) 1883
TfiI GAWTC 4 cut(s) 176, 1381, 1437, 1513
Tru1I TTAA 7 cut(s) 587, 855, 1041, 1173, 1431, 1521, 1782
Tru9I TTAA 7 cut(s) 587, 855, 1041, 1173, 1431, 1521, 1782
TscAI CASTG 3 cut(s) 61, 1330, 1601
TseFI GTSAC 2 cut(s) 886, 1414
TseI GCWGC 4 cut(s) 407, 440, 1243, 1940
Tsp45I GTSAC 2 cut(s) 886, 1414
TspGWI ACGGA 2 cut(s) 1211, 1678
TspRI CASTG 3 cut(s) 61, 1330, 1601
Tth111I GACNNNGTC 1 cut(s) 184
Vha464I CTTAAG 2 cut(s) 1430, 1781
VpaK11BI GGWCC 2 cut(s) 1085, 1422
VspI ATTAAT 1 cut(s) 587
XapI RAATTY 2 cut(s) 1034, 1666
XceI RCATGY 2 cut(s) 814, 1844
XspI CTAG 4 cut(s) 569, 1182, 1226, 1999
ZrmI AGTACT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.