RchiOBHm_Chr6g0257951

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002668
Physical Location & Seq
Reverse (-)
13425285 .. 13431900
6616 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23130

Sequence Viewer

Length: 1989 bp
ATGCAAGGTCAAGGGAGTGGAGTTGATACTTTTTCAGAAATCACTGATGTTGGTCTTGGACCTGTTTCCAACAGCACTGGTGAACCTAGTTCTAGATTGAATTTGCAAAACACAGTCAATGATGGTGGGACCAGAATGGAACATGGTTGGTCTGCTCCATATAGTGCTTGTCCTGTGATTGCTCAAAGATCAGAAGATAGACGAATTGAGCCAAATATCCTTTTTCCTGGGAGATCTCTTATTGGCCTTGGTGGCAATCAGATACCAGGTGGGCCTTCTTTTTCAGAAGGTTCTAGCTCTAGTTATATCCCTCAGCATGTAAATTTAAATGCAGGATATGTTGAAAATAGTGGTAACTATGGGCATGGTATGGAAGCTGATGCAGACCCTAAATTCTACAAGTCAAGTGGATTAGAAGCAGAACAGACGTCTCCAGGCAGTGCTTCACATGATATTGTTGGGACTTCATCTGGAAGCTCTGATTATATGGTTGGGGAAGACGATGGTAATCCAGGCTCTTCTTTTGGCAATTGGGGTTTATCCTGCAAGCGAAAGGCTCTTGAGGGTACGTCAGGGCAGTCTTATCCCGGTGGAAGTTCTAGCTCATTTCCTCAACCTGAAAATCGAGCATGGAATGCTGGTCCTGCATGTTATAATCCATCTAGTAGTTTAAGTTTATCTACGCCCCGTAATTCTCCTAGTGGCATTCCTTCAGAGCAGCAGAACTCAAGAACCAGGATTGGTTTGAGAGTTGGAGCATCTGATACCTTTCCTTCATTAGGTGTTACAGGAAATGCAGAGAGCCCACTGAGACAATATGTTAGGGGTTTCTGTAGTACTGGGTCTCAGCAAGAATCTGCACCATCAAACTTATCATCAGCTGGAAGATCAACAACAGTAGCTGCAACAAATTCGGGTGGTCCTCAAAGCCAGTCTCCTGCTATGCATATCAACAGTTCGTCTGGAAACATGCTTCCTTTCCCTTGGAATGGTGCTTCCAGTTCACGTGTGGGCAGCTTATCAGGCTCTGTTATGTCCGGATATAGAGGTGCTGAGTTAAGAGAAGAAGCAAGCTCACGAAGCATTTCTAGAAACAATGTGGAGCACCCCATGTTTGTAGCTACTGATATGAGAAATTCAGCACAGGATCCAACAGGTTGGAGTTTAGCCCCGGGAAACTTAAGCACTTCTGTAGGTGGTCCTTCCTCTGCTAGAATTGGCTCCAGTTCCGGCGTTCATTCTTTGCCTAATCCCTCATGGATCCCTCTCAACAGCCCTCCAACGGAAAATCAAAGGATTACTGAATTTGCACCTTGGTCTTTATTTCCATCTATAGATTCTCAACCCGGAGGTCATAATCATTATAATCCAATACCATCAGGACCTTCTGCTTCCTCTCAGGATTCTGGAACTTCTTCTGGATCAAATAATCAGGGTCGTCAACAACCACATCCTAGGTCAGCATTCTTGTTGGACAGACAAGGTGATGATGTTCTTAATATGCCCCATTCACTACGGGCATTAGCAGCTGACATTGATGGGAGGCGCCGACTTATATCTGAGATTCGTCAAGTTTTGAATGCTATGCGCAGGGGTGAGAACTTACGAGTCGAGGATTATATGCTCTTTGACCCATTCATATATCATGGCATGGCCGAGATGCATGATAGGCACAGAGACATGCGCCTTGATGTTGATAACATGTCTTACGAGGAACTATTAGCATTGGAGGAACGTATAGGAGATGTTAGCACTGGATTGAGTGAGGAGACCATATTGAAATTGATGAAACAGAGAAAATGTCTGTCTGTTACAACAGAATTCCCAGCAGATATGGAACCCTGCTGTATCTGTCAGGAGCAATATGCTGATGGGGATGATATTGGCAGACTGGATTGTGGGCATGACTTCCACACCAACTGCATTAAACAGTGGCTAATGCAGAAGAATCTGTGCCCGATTTGTAAAACGCCAGCCTTGCTGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006928 GO:0006935 GO:0007275 GO:0007399 GO:0007409 GO:0007411 GO:0007568 GO:0008045 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009791 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010228 GO:0010259 GO:0010468 GO:0010498 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0021675 GO:0022008 GO:0022414 GO:0023051 GO:0023056 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0030510 GO:0030513 GO:0031175 GO:0031323 GO:0031326 GO:0032446 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0032991 GO:0035107 GO:0035108 GO:0035136 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048468 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048736 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051603 GO:0060173 GO:0060255 GO:0060384 GO:0061061 GO:0061458 GO:0061564 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090092 GO:0090100 GO:0090287 GO:0097485 GO:0120036 GO:0120039 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

662

Amino Acids

70.71

Weight (kDa)

5.38

Isoelectric Point (pI)

63.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 612 - 656 5.8e-09 RING-H2 zinc finger domain
zf-RING_2 PF13639 615 - 656 3.5e-12 Ring finger domain
zf-C3HC4_2 PF13923 615 - 655 1.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 615 - 655 2.9e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 615 - 642 7.4e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 654, 1365
AatII GACGTC 1 cut(s) 431
Acc16I TGCGCA 1 cut(s) 1589
AccB1I GGYRCC 1 cut(s) 1545
AccIII TCCGGA 1 cut(s) 1037
AclWI GGATC 5 cut(s) 1142, 1155, 1255, 1268, 1429
AcoI YGGCCR 1 cut(s) 1653
AcsI RAATTY 7 cut(s) 100, 322, 392, 910, 1135, 1304, 1820
AcuI CTGAAG 1 cut(s) 696
AcvI CACGTG 1 cut(s) 1007
AcyI GRCGYC 2 cut(s) 428, 1546
AfaI GTAC 2 cut(s) 568, 838
AfiI CCNNNNNNNGG 3 cut(s) 779, 989, 1282
AflII CTTAAG 1 cut(s) 1180
AflIII ACRYGT 2 cut(s) 1006, 1701
AgsI TTSAA 4 cut(s) 100, 344, 1579, 1780
AjnI CCWGG 5 cut(s) 226, 265, 433, 511, 734
Alw21I GWGCWC 1 cut(s) 1107
Alw26I GTCTC 6 cut(s) 435, 805, 849, 939, 1671, 1763
AlwI GGATC 5 cut(s) 1142, 1155, 1255, 1268, 1429
AlwNI CAGNNNCTG 2 cut(s) 902, 1028
Ama87I CYCGRG 1 cut(s) 1171
Aor13HI TCCGGA 1 cut(s) 1037
AoxI GGCC 3 cut(s) 244, 272, 1653
ApeKI GCWGC 4 cut(s) 718, 902, 1014, 1526
ApoI RAATTY 7 cut(s) 100, 322, 392, 910, 1135, 1304, 1820
Asp700I GAANNNNTTC 2 cut(s) 1084, 1414
AspA2I CCTAGG 1 cut(s) 1454
AspLEI GCGC 3 cut(s) 1548, 1590, 1686
AspS9I GGNCC 7 cut(s) 59, 129, 272, 641, 920, 1199, 1382
AsuC2I CCSGG 4 cut(s) 588, 1172, 1173, 1347
AsuHPI GGTGA 3 cut(s) 92, 1496, 1607
AvaI CYCGRG 1 cut(s) 1171
AvaII GGWCC 6 cut(s) 59, 129, 641, 920, 1199, 1382
AvrII CCTAGG 1 cut(s) 1454
BaeGI GKGCMC 1 cut(s) 1958
BamHI GGATCC 2 cut(s) 1147, 1260
BanI GGYRCC 1 cut(s) 1545
BanII GRGCYC 1 cut(s) 806
BbrPI CACGTG 1 cut(s) 1007
BbsI GAAGAC 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 1107
BbvCI CCTCAGC 1 cut(s) 312
BbvI GCAGC 4 cut(s) 730, 889, 1026, 1538
BccI CCATC 8 cut(s) 116, 497, 667, 871, 1336, 1384, 1532, 1865
BcgI CGANNNNNNTGC 2 cut(s) 894, 928
BciT130I CCWGG 5 cut(s) 228, 267, 435, 513, 736
BcnI CCSGG 4 cut(s) 588, 1172, 1173, 1347
BcoDI GTCTC 6 cut(s) 435, 805, 849, 939, 1671, 1763
BfmI CTRYAG 3 cut(s) 832, 1191, 1332
BfoI RGCGCY 1 cut(s) 1549
BfrI CTTAAG 1 cut(s) 1180
BglI GCCNNNNNGGC 1 cut(s) 252
BglII AGATCT 1 cut(s) 233
BisI GCNGC 4 cut(s) 719, 903, 1015, 1527
BlnI CCTAGG 1 cut(s) 1454
BlsI GCNGC 4 cut(s) 720, 904, 1016, 1528
BmcAI AGTACT 1 cut(s) 838
Bme1390I CCNGG 9 cut(s) 228, 267, 435, 513, 588, 736, 1172, 1173, 1347
Bme18I GGWCC 6 cut(s) 59, 129, 641, 920, 1199, 1382
BmeT110I CYCGRG 1 cut(s) 1171
BmgT120I GGNCC 7 cut(s) 59, 129, 272, 641, 920, 1199, 1382
BmiI GGNNCC 6 cut(s) 130, 1149, 1222, 1262, 1547, 1839
BmrFI CCNGG 9 cut(s) 228, 267, 435, 513, 588, 736, 1172, 1173, 1347
BmrI ACTGGG 1 cut(s) 849
BmsI GCATC 3 cut(s) 370, 767, 1650
BmuI ACTGGG 1 cut(s) 849
BpiI GAAGAC 1 cut(s) 504
BpmI CTGGAG 2 cut(s) 417, 1207
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 581, 712
BpuMI CCSGG 4 cut(s) 588, 1172, 1173, 1347
BsaAI YACGTR 1 cut(s) 1007
BsaBI GATNNNNATC 1 cut(s) 507
BsaHI GRCGYC 2 cut(s) 428, 1546
BsaI GGTCTC 2 cut(s) 849, 1763
BsaJI CCNNGG 7 cut(s) 227, 247, 983, 1170, 1171, 1313, 1454
BsaWI WCCGGW 1 cut(s) 1037
Bsc4I CCNNNNNNNGG 3 cut(s) 779, 989, 1282
Bse1I ACTGG 7 cut(s) 82, 844, 931, 999, 1224, 1759, 1896
Bse8I GATNNNNATC 1 cut(s) 507
BseAI TCCGGA 1 cut(s) 1037
BseBI CCWGG 5 cut(s) 228, 267, 435, 513, 736
BseDI CCNNGG 7 cut(s) 227, 247, 983, 1170, 1171, 1313, 1454
BseGI GGATG 2 cut(s) 1450, 1882
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 3 cut(s) 779, 989, 1282
BseMII CTCAG 6 cut(s) 326, 800, 860, 1044, 1412, 1551
BseNI ACTGG 7 cut(s) 82, 844, 931, 999, 1224, 1759, 1896
BseRI GAGGAG 1 cut(s) 1781
BseSI GKGCMC 1 cut(s) 1958
BseXI GCAGC 4 cut(s) 730, 889, 1026, 1538
BseYI CCCAGC 1 cut(s) 1825
BsgI GTGCAG 1 cut(s) 843
BshFI GGCC 3 cut(s) 246, 274, 1655
BshNI GGYRCC 1 cut(s) 1545
BsiHKAI GWGCWC 1 cut(s) 1107
BsiHKCI CYCGRG 1 cut(s) 1171
BsiSI CCGG 5 cut(s) 588, 1038, 1172, 1230, 1347
BslFI GGGAC 2 cut(s) 142, 475
BslI CCNNNNNNNGG 3 cut(s) 779, 989, 1282
BsmAI GTCTC 6 cut(s) 435, 805, 849, 939, 1671, 1763
BsmBI CGTCTC 1 cut(s) 435
BsmFI GGGAC 2 cut(s) 142, 475
BsmI GAATGC 4 cut(s) 640, 705, 1463, 1585
BsnI GGCC 3 cut(s) 246, 274, 1655
Bso31I GGTCTC 2 cut(s) 849, 1763
BsoBI CYCGRG 1 cut(s) 1171
Bsp1286I GDGCHC 3 cut(s) 806, 1107, 1958
Bsp13I TCCGGA 1 cut(s) 1037
Bsp143I GATC 6 cut(s) 188, 233, 887, 1147, 1260, 1421
BspANI GGCC 3 cut(s) 246, 274, 1655
BspCNI CTCAG 6 cut(s) 325, 801, 859, 1045, 1411, 1552
BspEI TCCGGA 1 cut(s) 1037
BspLI GGNNCC 6 cut(s) 130, 1149, 1222, 1262, 1547, 1839
BspPI GGATC 5 cut(s) 1142, 1155, 1255, 1268, 1429
BspQI GCTCTTC 1 cut(s) 523
BspT107I GGYRCC 1 cut(s) 1545
BspTI CTTAAG 1 cut(s) 1180
BspTNI GGTCTC 2 cut(s) 849, 1763
BsrI ACTGG 7 cut(s) 82, 844, 931, 999, 1224, 1759, 1896
BssECI CCNNGG 7 cut(s) 227, 247, 983, 1170, 1171, 1313, 1454
BssMI GATC 6 cut(s) 188, 233, 887, 1147, 1260, 1421
BssNI GRCGYC 2 cut(s) 428, 1546
BssT1I CCWWGG 4 cut(s) 247, 983, 1313, 1454
Bst2UI CCWGG 5 cut(s) 228, 267, 435, 513, 736
Bst4CI ACNGT 4 cut(s) 115, 898, 956, 1932
Bst6I CTCTTC 1 cut(s) 523
BstACI GRCGYC 2 cut(s) 428, 1546
BstAFI CTTAAG 1 cut(s) 1180
BstAPI GCANNNNNTGC 1 cut(s) 635
BstBAI YACGTR 1 cut(s) 1007
BstC8I GCNNGC 3 cut(s) 548, 1072, 1974
BstDEI CTNAG 6 cut(s) 312, 809, 846, 1053, 1398, 1560
BstENI CCTNNNNNAGG 1 cut(s) 777
BstF5I GGATG 2 cut(s) 1450, 1882
BstH2I RGCGCY 1 cut(s) 1549
BstHHI GCGC 3 cut(s) 1548, 1590, 1686
BstKTI GATC 6 cut(s) 191, 236, 890, 1150, 1263, 1424
BstMAI GTCTC 6 cut(s) 435, 805, 849, 939, 1671, 1763
BstMBI GATC 6 cut(s) 188, 233, 887, 1147, 1260, 1421
BstMWI GCNNNNNNNGC 8 cut(s) 252, 635, 644, 1023, 1080, 1526, 1669, 1978
BstNI CCWGG 5 cut(s) 228, 267, 435, 513, 736
BstNSI RCATGY 5 cut(s) 320, 651, 973, 1684, 1705
BstSCI CCNGG 9 cut(s) 226, 265, 433, 511, 586, 734, 1170, 1171, 1345
BstSFI CTRYAG 3 cut(s) 832, 1191, 1332
BstSLI GKGCMC 1 cut(s) 1958
BstV1I GCAGC 4 cut(s) 730, 889, 1026, 1538
BstV2I GAAGAC 1 cut(s) 504
BstX2I RGATCY 3 cut(s) 233, 1147, 1260
BstXI CCANNNNNNTGG 1 cut(s) 1158
BstYI RGATCY 3 cut(s) 233, 1147, 1260
BsuRI GGCC 3 cut(s) 246, 274, 1655
BtsCI GGATG 2 cut(s) 1450, 1882
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 6 cut(s) 42, 75, 445, 806, 1752, 1937
Cac8I GCNNGC 3 cut(s) 548, 1072, 1974
CaiI CAGNNNCTG 2 cut(s) 902, 1028
CfoI GCGC 3 cut(s) 1548, 1590, 1686
Cfr13I GGNCC 7 cut(s) 59, 129, 272, 641, 920, 1199, 1382
Cfr9I CCCGGG 1 cut(s) 1171
CsiI ACCWGGT 1 cut(s) 265
Csp6I GTAC 2 cut(s) 567, 837
CspCI CAANNNNNGTGG 4 cut(s) 106, 141, 388, 423
CviQI GTAC 2 cut(s) 567, 837
DdeI CTNAG 6 cut(s) 312, 809, 846, 1053, 1398, 1560
DinI GGCGCC 1 cut(s) 1547
DpnI GATC 6 cut(s) 190, 235, 889, 1149, 1262, 1423
DpnII GATC 6 cut(s) 188, 233, 887, 1147, 1260, 1421
DraI TTTAAA 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 1653
Eam1104I CTCTTC 1 cut(s) 523
EarI CTCTTC 1 cut(s) 523
Eco130I CCWWGG 4 cut(s) 247, 983, 1313, 1454
Eco24I GRGCYC 1 cut(s) 806
Eco31I GGTCTC 2 cut(s) 849, 1763
Eco47I GGWCC 6 cut(s) 59, 129, 641, 920, 1199, 1382
Eco57I CTGAAG 1 cut(s) 696
Eco72I CACGTG 1 cut(s) 1007
Eco88I CYCGRG 1 cut(s) 1171
EcoNI CCTNNNNNAGG 1 cut(s) 777
EcoO109I RGGNCCY 1 cut(s) 1382
EcoRI GAATTC 1 cut(s) 1820
EcoRII CCWGG 5 cut(s) 226, 265, 433, 511, 734
EcoT14I CCWWGG 4 cut(s) 247, 983, 1313, 1454
EcoT22I ATGCAT 2 cut(s) 948, 1665
EcoT38I GRGCYC 1 cut(s) 806
EgeI GGCGCC 1 cut(s) 1547
EheI GGCGCC 1 cut(s) 1547
ErhI CCWWGG 4 cut(s) 247, 983, 1313, 1454
Esp3I CGTCTC 1 cut(s) 435
FaqI GGGAC 2 cut(s) 142, 475
Fnu4HI GCNGC 4 cut(s) 719, 903, 1015, 1527
FokI GGATG 2 cut(s) 1437, 1889
FriOI GRGCYC 1 cut(s) 806
Fsp4HI GCNGC 4 cut(s) 719, 903, 1015, 1527
FspI TGCGCA 1 cut(s) 1589
GlaI GCGC 3 cut(s) 1547, 1589, 1685
GluI GCNGC 4 cut(s) 719, 903, 1015, 1527
GsaI CCCAGC 1 cut(s) 1829
GsuI CTGGAG 2 cut(s) 417, 1207
HaeII RGCGCY 1 cut(s) 1549
HaeIII GGCC 3 cut(s) 246, 274, 1655
HapII CCGG 5 cut(s) 588, 1038, 1172, 1230, 1347
HhaI GCGC 3 cut(s) 1548, 1590, 1686
Hin1I GRCGYC 2 cut(s) 428, 1546
Hin6I GCGC 3 cut(s) 1546, 1588, 1684
HinP1I GCGC 3 cut(s) 1546, 1588, 1684
HincII GTYRAC 1 cut(s) 1442
HindII GTYRAC 1 cut(s) 1442
HinfI GANTC 6 cut(s) 854, 1337, 1403, 1564, 1608, 1948
HpaII CCGG 5 cut(s) 588, 1038, 1172, 1230, 1347
HphI GGTGA 3 cut(s) 92, 1496, 1607
Hpy166II GTNNAC 3 cut(s) 83, 1004, 1442
Hpy188I TCNGA 8 cut(s) 37, 193, 261, 286, 481, 715, 763, 1561
Hpy8I GTNNAC 3 cut(s) 83, 1004, 1442
HpyAV CCTTC 6 cut(s) 281, 285, 720, 783, 1212, 1395
HpyCH4III ACNGT 4 cut(s) 115, 898, 956, 1932
HpyCH4IV ACGT 4 cut(s) 428, 569, 1006, 1735
HpyF10VI GCNNNNNNNGC 8 cut(s) 252, 635, 644, 1023, 1080, 1526, 1669, 1978
HpyF3I CTNAG 6 cut(s) 312, 809, 846, 1053, 1398, 1560
HpySE526I ACGT 4 cut(s) 428, 569, 1006, 1735
Hsp92I GRCGYC 2 cut(s) 428, 1546
HspAI GCGC 3 cut(s) 1546, 1588, 1684
KasI GGCGCC 1 cut(s) 1545
Kpn2I TCCGGA 1 cut(s) 1037
Kzo9I GATC 6 cut(s) 188, 233, 887, 1147, 1260, 1421
LguI GCTCTTC 1 cut(s) 523
LmnI GCTCC 5 cut(s) 160, 755, 1102, 1226, 1858
Lsp1109I GCAGC 4 cut(s) 730, 889, 1026, 1538
LweI GCATC 3 cut(s) 370, 767, 1650
MabI ACCWGGT 1 cut(s) 265
MaeII ACGT 4 cut(s) 428, 569, 1006, 1735
MaeIII GTNAC 3 cut(s) 353, 784, 1810
MalI GATC 6 cut(s) 190, 235, 889, 1149, 1262, 1423
MboI GATC 6 cut(s) 188, 233, 887, 1147, 1260, 1421
MboII GAAGA 7 cut(s) 206, 509, 510, 897, 1076, 1407, 1957
MfeI CAATTG 1 cut(s) 529
MflI RGATCY 3 cut(s) 233, 1147, 1260
MhlI GDGCHC 3 cut(s) 806, 1107, 1958
Mly113I GGCGCC 1 cut(s) 1546
MlyI GAGTC 1 cut(s) 1617
MmeI TCCRAC 6 cut(s) 93, 733, 1139, 1175, 1304, 1452
Mph1103I ATGCAT 2 cut(s) 948, 1665
MroI TCCGGA 1 cut(s) 1037
MroXI GAANNNNTTC 2 cut(s) 1084, 1414
MseI TTAA 6 cut(s) 326, 671, 1058, 1181, 1497, 1926
MspA1I CMGCKG 2 cut(s) 881, 1529
MspCI CTTAAG 1 cut(s) 1180
MspI CCGG 5 cut(s) 588, 1038, 1172, 1230, 1347
MspR9I CCNGG 9 cut(s) 228, 267, 435, 513, 588, 736, 1172, 1173, 1347
MunI CAATTG 1 cut(s) 529
Mva1269I GAATGC 4 cut(s) 640, 705, 1463, 1585
MvaI CCWGG 5 cut(s) 228, 267, 435, 513, 736
MwoI GCNNNNNNNGC 8 cut(s) 252, 635, 644, 1023, 1080, 1526, 1669, 1978
NarI GGCGCC 1 cut(s) 1546
NciI CCSGG 4 cut(s) 588, 1172, 1173, 1347
NdeII GATC 6 cut(s) 188, 233, 887, 1147, 1260, 1421
NlaIV GGNNCC 6 cut(s) 130, 1149, 1222, 1262, 1547, 1839
NmeAIII GCCGAG 1 cut(s) 1681
NsbI TGCGCA 1 cut(s) 1589
NsiI ATGCAT 2 cut(s) 948, 1665
NspI RCATGY 5 cut(s) 320, 651, 973, 1684, 1705
PciI ACATGT 1 cut(s) 1701
PciSI GCTCTTC 1 cut(s) 523
PctI GAATGC 4 cut(s) 640, 705, 1463, 1585
PdmI GAANNNNTTC 2 cut(s) 1084, 1414
PfeI GAWTC 5 cut(s) 854, 1337, 1403, 1564, 1948
PkrI GCNGC 4 cut(s) 720, 904, 1016, 1528
PleI GAGTC 1 cut(s) 1616
PluTI GGCGCC 1 cut(s) 1549
PmaCI CACGTG 1 cut(s) 1007
PmlI CACGTG 1 cut(s) 1007
PpsI GAGTC 1 cut(s) 1616
Ppu21I YACGTR 1 cut(s) 1007
PpuMI RGGWCCY 1 cut(s) 1382
PscI ACATGT 1 cut(s) 1701
PsiI TTATAA 2 cut(s) 654, 1365
Psp5II RGGWCCY 1 cut(s) 1382
Psp6I CCWGG 5 cut(s) 226, 265, 433, 511, 734
PspCI CACGTG 1 cut(s) 1007
PspFI CCCAGC 1 cut(s) 1825
PspGI CCWGG 5 cut(s) 226, 265, 433, 511, 734
PspN4I GGNNCC 6 cut(s) 130, 1149, 1222, 1262, 1547, 1839
PspPI GGNCC 7 cut(s) 59, 129, 272, 641, 920, 1199, 1382
PspPPI RGGWCCY 1 cut(s) 1382
PstNI CAGNNNCTG 2 cut(s) 902, 1028
PsuI RGATCY 3 cut(s) 233, 1147, 1260
PvuII CAGCTG 2 cut(s) 881, 1529
RsaI GTAC 2 cut(s) 568, 838
RsaNI GTAC 2 cut(s) 567, 837
SapI GCTCTTC 1 cut(s) 523
SaqAI TTAA 6 cut(s) 326, 671, 1058, 1181, 1497, 1926
SatI GCNGC 4 cut(s) 719, 903, 1015, 1527
Sau3AI GATC 6 cut(s) 188, 233, 887, 1147, 1260, 1421
Sau96I GGNCC 7 cut(s) 59, 129, 272, 641, 920, 1199, 1382
ScaI AGTACT 1 cut(s) 838
SchI GAGTC 1 cut(s) 1617
ScrFI CCNGG 9 cut(s) 228, 267, 435, 513, 588, 736, 1172, 1173, 1347
SduI GDGCHC 3 cut(s) 806, 1107, 1958
SexAI ACCWGGT 1 cut(s) 265
SfaNI GCATC 3 cut(s) 370, 767, 1650
SfcI CTRYAG 3 cut(s) 832, 1191, 1332
SfoI GGCGCC 1 cut(s) 1547
SinI GGWCC 6 cut(s) 59, 129, 641, 920, 1199, 1382
SmaI CCCGGG 1 cut(s) 1173
SmiI ATTTAAAT 1 cut(s) 327
SmlI CTYRAG 3 cut(s) 560, 727, 1180
SmoI CTYRAG 3 cut(s) 560, 727, 1180
SspDI GGCGCC 1 cut(s) 1545
StyD4I CCNGG 9 cut(s) 226, 265, 433, 511, 586, 734, 1170, 1171, 1345
StyI CCWWGG 4 cut(s) 247, 983, 1313, 1454
SwaI ATTTAAAT 1 cut(s) 327
TaaI ACNGT 4 cut(s) 115, 898, 956, 1932
TaiI ACGT 4 cut(s) 431, 572, 1009, 1738
TaqI TCGA 2 cut(s) 625, 1611
TatI WGTACW 1 cut(s) 836
TfiI GAWTC 5 cut(s) 854, 1337, 1403, 1564, 1948
Tru1I TTAA 6 cut(s) 326, 671, 1058, 1181, 1497, 1926
Tru9I TTAA 6 cut(s) 326, 671, 1058, 1181, 1497, 1926
TscAI CASTG 6 cut(s) 49, 82, 445, 813, 1759, 1937
TseI GCWGC 4 cut(s) 718, 902, 1014, 1526
TspDTI ATGAA 5 cut(s) 456, 765, 1226, 1627, 1802
TspGWI ACGGA 1 cut(s) 1298
TspMI CCCGGG 1 cut(s) 1171
TspRI CASTG 6 cut(s) 49, 82, 445, 813, 1759, 1937
Vha464I CTTAAG 1 cut(s) 1180
VpaK11BI GGWCC 6 cut(s) 59, 129, 641, 920, 1199, 1382
XagI CCTNNNNNAGG 1 cut(s) 777
XapI RAATTY 7 cut(s) 100, 322, 392, 910, 1135, 1304, 1820
XbaI TCTAGA 2 cut(s) 92, 1088
XceI RCATGY 5 cut(s) 320, 651, 973, 1684, 1705
XcmI CCANNNNNNNNNTGG 1 cut(s) 1006
XmaI CCCGGG 1 cut(s) 1171
XmaJI CCTAGG 1 cut(s) 1454
XmnI GAANNNNTTC 2 cut(s) 1084, 1414
ZraI GACGTC 1 cut(s) 429
ZrmI AGTACT 1 cut(s) 838
Zsp2I ATGCAT 2 cut(s) 948, 1665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.