AT2G15910

CSL zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002470
Physical Location & Seq
Reverse (-)
6932406 .. 6935514
3109 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15910.2

Sequence Viewer

Length: 1104 bp
ATGTCGTACGACGATGTTGAGATAGAGGATATGGAGTGGAACGAAGAGATTCAAGCGTACACGTATCCTTGTCCTTGTGGTGATTTGTTCCAGATTACGAAAGAAGATCTCCGGCTCGGCGAAGAGATCGCGAATTGCCCAAGTTGTTCTCTTTATATCACCGTCATCTACAATATGGAAGATTTTCAAAACGATACGAAGAAGAATAACGAACCTAAAACTCGTCACCCTGTGGCCAGAAGGAAGTATTTGCAATTTACTGATAAGAAGACAATCTGCAATCATGACGAAAACACCTCTGCTGCTTTTTTCGGATTACTTATGGTTTTCTTGGGAAAGAAGAAAACAAAGCTAAGAATGAGGAATTCAACAACCATCATGATGATAATGATGATTGTGATGATGGTGGATGATTGGGTTGGAGCAGCGGACAATAATCCGGTGTACAGTCCATGTTCAGATACACAAATAAGCAAAGGAGATGGTTTCACCATTGGTATTGCCATCTCTAGCAAAGAAGCTTTTTTTCTTGACCAAGTCCAGCTTTCTCCCTGTGATACTCGTCTCGGTTTAGCTGCGAAAATGGCGCAGCTTGCGCTTTTTAGACCTAAGGTTGACGAGATCTCTCTTCTCTCCATCGACACAAGTAAGTTTAACCCGAGTGAAGCAGGTGGATTCATGGTGGGATTCGCGGGCTCAAAATATGCAGCAAGATCATATCCTGTGAAGGTTGCAGATGGAAGCAACACAATCACAGCTTTCACACTTGTAATGAAATTAACCCTAAGCCCCTTGGTACTGGAATTTCAGAAGGGAGTGTTGCAGAATCTGTTCTGGAAGAGCTTCGGATGCGATTTGTGCAAAGGAACAGGATCTTCTTCTTCTGTGTGCCTGAATGGGACGGATTGCGCGGTTCCAACTTCAAAGTGTAAGGCTAATGGAGGTCAAGCTAACTGCAACATTGGAATTCAGGTCGCGTTTTCGGGAACAGACAGAAACCTCGAGTCATTGAACACTTGGTACGAGGTAAACAATCTGAGGCAGTACTCGCTTACTGACCTCTACGCAAACGCTGTAGACTCTCTGAGTGGTGGGCTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CSL

Protein Analysis

367

Amino Acids

40.55

Weight (kDa)

5.19

Isoelectric Point (pI)

32.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_CSL PF05207 4 - 58 1.7e-24 CSL zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 659
Acc36I ACCTGC 1 cut(s) 659
AccI GTMKAC 1 cut(s) 1077
AccII CGCG 4 cut(s) 131, 692, 911, 977
AciI CCGC 3 cut(s) 428, 692, 911
AclWI GGATC 1 cut(s) 880
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 3 cut(s) 364, 803, 966
AdeI CACNNNGTG 1 cut(s) 232
AfaI GTAC 6 cut(s) 8, 59, 446, 798, 1022, 1046
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 5 cut(s) 53, 188, 369, 924, 1012
AluBI AGCT 8 cut(s) 352, 521, 544, 575, 592, 758, 843, 950
AluI AGCT 8 cut(s) 352, 521, 544, 575, 592, 758, 843, 950
Alw26I GTCTC 1 cut(s) 569
AlwI GGATC 1 cut(s) 880
AlwNI CAGNNNCTG 1 cut(s) 829
Ama87I CYCGRG 2 cut(s) 658, 1001
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 6 cut(s) 302, 425, 575, 589, 707, 1096
ApoI RAATTY 3 cut(s) 364, 803, 966
Asp700I GAANNNNTTC 4 cut(s) 48, 183, 830, 842
AspLEI GCGC 3 cut(s) 589, 598, 911
AsuHPI GGTGA 4 cut(s) 92, 151, 218, 481
AvaI CYCGRG 2 cut(s) 658, 1001
AxyI CCTNAGG 1 cut(s) 609
BalI TGGCCA 1 cut(s) 236
BanII GRGCYC 1 cut(s) 698
BbsI GAAGAC 1 cut(s) 275
BbvI GCAGC 6 cut(s) 289, 437, 562, 601, 719, 1083
BccI CCATC 6 cut(s) 383, 397, 476, 512, 644, 731
BciVI GTATCC 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 1 cut(s) 510
BfmI CTRYAG 1 cut(s) 1074
BfuAI ACCTGC 1 cut(s) 659
BfuI GTATCC 1 cut(s) 75
BglII AGATCT 2 cut(s) 106, 621
BisI GCNGC 6 cut(s) 303, 426, 576, 590, 708, 1097
BlsI GCNGC 6 cut(s) 304, 427, 577, 591, 709, 1098
BmcAI AGTACT 1 cut(s) 1046
BmeT110I CYCGRG 2 cut(s) 658, 1001
BmiI GGNNCC 1 cut(s) 915
BmsI GCATC 1 cut(s) 839
BpiI GAAGAC 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 785
BsaAI YACGTR 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 792
BsaWI WCCGGW 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 804
Bse21I CCTNAGG 1 cut(s) 609
BseDI CCNNGG 1 cut(s) 792
BseGI GGATG 2 cut(s) 415, 854
BseMII CTCAG 2 cut(s) 1028, 1076
BseNI ACTGG 1 cut(s) 804
BseXI GCAGC 6 cut(s) 289, 437, 562, 601, 719, 1083
Bsh1236I CGCG 4 cut(s) 131, 692, 911, 977
BshFI GGCC 1 cut(s) 236
BsiHKCI CYCGRG 2 cut(s) 658, 1001
BsiSI CCGG 2 cut(s) 112, 440
BsiWI CGTACG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 913
BsmAI GTCTC 1 cut(s) 569
BsmBI CGTCTC 1 cut(s) 569
BsmFI GGGAC 1 cut(s) 913
BsnI GGCC 1 cut(s) 236
BsoBI CYCGRG 2 cut(s) 658, 1001
Bsp1286I GDGCHC 1 cut(s) 698
Bsp1407I TGTACA 1 cut(s) 444
Bsp143I GATC 5 cut(s) 106, 126, 621, 713, 872
Bsp68I TCGCGA 1 cut(s) 131
BspACI CCGC 3 cut(s) 428, 692, 911
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 2 cut(s) 1029, 1077
BspFNI CGCG 4 cut(s) 131, 692, 911, 977
BspHI TCATGA 2 cut(s) 283, 378
BspLI GGNNCC 1 cut(s) 915
BspMI ACCTGC 1 cut(s) 659
BspPI GGATC 1 cut(s) 880
BspQI GCTCTTC 1 cut(s) 833
BsrGI TGTACA 1 cut(s) 444
BsrI ACTGG 1 cut(s) 804
BssECI CCNNGG 1 cut(s) 792
BssMI GATC 5 cut(s) 106, 126, 621, 713, 872
BssT1I CCWWGG 1 cut(s) 792
Bst4CI ACNGT 2 cut(s) 163, 449
Bst6I CTCTTC 4 cut(s) 39, 117, 633, 833
BstAUI TGTACA 1 cut(s) 444
BstBAI YACGTR 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 594, 694
BstDEI CTNAG 5 cut(s) 353, 609, 785, 1037, 1085
BstF5I GGATG 2 cut(s) 415, 854
BstFNI CGCG 4 cut(s) 131, 692, 911, 977
BstHHI GCGC 3 cut(s) 589, 598, 911
BstKTI GATC 5 cut(s) 109, 129, 624, 716, 875
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 5 cut(s) 106, 126, 621, 713, 872
BstMWI GCNNNNNNNGC 6 cut(s) 584, 593, 595, 849, 858, 1048
BstSFI CTRYAG 1 cut(s) 1074
BstUI CGCG 4 cut(s) 131, 692, 911, 977
BstV1I GCAGC 6 cut(s) 289, 437, 562, 601, 719, 1083
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 3 cut(s) 106, 621, 872
BstYI RGATCY 3 cut(s) 106, 621, 872
Bsu36I CCTNAGG 1 cut(s) 609
BsuI GTATCC 1 cut(s) 75
BsuRI GGCC 1 cut(s) 236
BtsCI GGATG 2 cut(s) 415, 854
BtuMI TCGCGA 1 cut(s) 131
BveI ACCTGC 1 cut(s) 659
Cac8I GCNNGC 2 cut(s) 594, 694
CaiI CAGNNNCTG 1 cut(s) 829
CciI TCATGA 2 cut(s) 283, 378
CfoI GCGC 3 cut(s) 589, 598, 911
Csp6I GTAC 6 cut(s) 7, 58, 445, 797, 1021, 1045
CviAII CATG 4 cut(s) 284, 379, 453, 679
CviQI GTAC 6 cut(s) 7, 58, 445, 797, 1021, 1045
DdeI CTNAG 5 cut(s) 353, 609, 785, 1037, 1085
DpnI GATC 5 cut(s) 108, 128, 623, 715, 874
DpnII GATC 5 cut(s) 106, 126, 621, 713, 872
DraIII CACNNNGTG 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 4 cut(s) 39, 117, 633, 833
EarI CTCTTC 4 cut(s) 39, 117, 633, 833
Eco130I CCWWGG 1 cut(s) 792
Eco24I GRGCYC 1 cut(s) 698
Eco81I CCTNAGG 1 cut(s) 609
Eco88I CYCGRG 2 cut(s) 658, 1001
EcoRI GAATTC 2 cut(s) 364, 966
EcoT14I CCWWGG 1 cut(s) 792
EcoT38I GRGCYC 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 792
Esp3I CGTCTC 1 cut(s) 569
FaeI CATG 4 cut(s) 287, 382, 456, 682
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FaqI GGGAC 1 cut(s) 913
FatI CATG 4 cut(s) 283, 378, 452, 678
FauI CCCGC 1 cut(s) 685
FblI GTMKAC 1 cut(s) 1077
Fnu4HI GCNGC 6 cut(s) 303, 426, 576, 590, 708, 1097
FokI GGATG 2 cut(s) 422, 861
FriOI GRGCYC 1 cut(s) 698
Fsp4HI GCNGC 6 cut(s) 303, 426, 576, 590, 708, 1097
FspBI CTAG 1 cut(s) 510
GlaI GCGC 3 cut(s) 588, 597, 910
GluI GCNGC 6 cut(s) 303, 426, 576, 590, 708, 1097
HaeIII GGCC 1 cut(s) 236
HapII CCGG 2 cut(s) 112, 440
HhaI GCGC 3 cut(s) 589, 598, 911
Hin1II CATG 4 cut(s) 287, 382, 456, 682
Hin6I GCGC 3 cut(s) 587, 596, 909
HinP1I GCGC 3 cut(s) 587, 596, 909
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 519
HinfI GANTC 6 cut(s) 49, 675, 687, 826, 1004, 1079
HpaII CCGG 2 cut(s) 112, 440
HphI GGTGA 4 cut(s) 92, 151, 218, 481
Hpy166II GTNNAC 5 cut(s) 60, 445, 616, 1030, 1078
Hpy188I TCNGA 6 cut(s) 314, 460, 810, 848, 1038, 1086
Hpy188III TCNNGA 7 cut(s) 91, 130, 284, 379, 530, 835, 984
Hpy8I GTNNAC 5 cut(s) 60, 445, 616, 1030, 1078
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 3 cut(s) 234, 721, 805
HpyCH4III ACNGT 2 cut(s) 163, 449
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 7 cut(s) 253, 279, 707, 734, 823, 861, 957
HpyF10VI GCNNNNNNNGC 6 cut(s) 584, 593, 595, 849, 858, 1048
HpyF3I CTNAG 5 cut(s) 353, 609, 785, 1037, 1085
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 4 cut(s) 287, 382, 456, 682
HspAI GCGC 3 cut(s) 587, 596, 909
Kzo9I GATC 5 cut(s) 106, 126, 621, 713, 872
LguI GCTCTTC 1 cut(s) 833
LmnI GCTCC 1 cut(s) 422
Lsp1109I GCAGC 6 cut(s) 289, 437, 562, 601, 719, 1083
LweI GCATC 1 cut(s) 839
MaeI CTAG 1 cut(s) 510
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 224
MalI GATC 5 cut(s) 108, 128, 623, 715, 874
MboI GATC 5 cut(s) 106, 126, 621, 713, 872
MflI RGATCY 3 cut(s) 106, 621, 872
MhlI GDGCHC 1 cut(s) 698
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 6 cut(s) 133, 254, 364, 776, 803, 966
MluNI TGGCCA 1 cut(s) 236
MlyI GAGTC 2 cut(s) 1013, 1073
MmeI TCCRAC 2 cut(s) 400, 941
MnlI CCTC 8 cut(s) 19, 307, 354, 935, 1010, 1018, 1032, 1070
Mox20I TGGCCA 1 cut(s) 236
MroXI GAANNNNTTC 4 cut(s) 48, 183, 830, 842
MscI TGGCCA 1 cut(s) 236
MseI TTAA 2 cut(s) 654, 779
MslI CAYNNNNRTG 1 cut(s) 380
Msp20I TGGCCA 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 2 cut(s) 112, 440
MvnI CGCG 4 cut(s) 131, 692, 911, 977
MwoI GCNNNNNNNGC 6 cut(s) 584, 593, 595, 849, 858, 1048
NdeII GATC 5 cut(s) 106, 126, 621, 713, 872
NlaIII CATG 4 cut(s) 287, 382, 456, 682
NlaIV GGNNCC 1 cut(s) 915
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 224
NruI TCGCGA 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 1001
PagI TCATGA 2 cut(s) 283, 378
PaqCI CACCTGC 1 cut(s) 659
PciSI GCTCTTC 1 cut(s) 833
PdmI GAANNNNTTC 4 cut(s) 48, 183, 830, 842
PfeI GAWTC 4 cut(s) 49, 675, 687, 826
Pfl23II CGTACG 1 cut(s) 6
PflFI GACNNNGTC 1 cut(s) 536
PkrI GCNGC 6 cut(s) 304, 427, 577, 591, 709, 1098
PleI GAGTC 2 cut(s) 1012, 1073
PpsI GAGTC 2 cut(s) 1012, 1073
Ppu21I YACGTR 1 cut(s) 63
PspLI CGTACG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 915
PspXI VCTCGAGB 1 cut(s) 1001
PsrI GAACNNNNNNTAC 2 cut(s) 1004, 1036
PstNI CAGNNNCTG 1 cut(s) 829
PsuI RGATCY 3 cut(s) 106, 621, 872
PsyI GACNNNGTC 1 cut(s) 536
RruI TCGCGA 1 cut(s) 131
RsaI GTAC 6 cut(s) 8, 59, 446, 798, 1022, 1046
RsaNI GTAC 6 cut(s) 7, 58, 445, 797, 1021, 1045
RseI CAYNNNNRTG 1 cut(s) 380
SapI GCTCTTC 1 cut(s) 833
SaqAI TTAA 2 cut(s) 654, 779
SatI GCNGC 6 cut(s) 303, 426, 576, 590, 708, 1097
Sau3AI GATC 5 cut(s) 106, 126, 621, 713, 872
ScaI AGTACT 1 cut(s) 1046
SchI GAGTC 2 cut(s) 1013, 1073
SduI GDGCHC 1 cut(s) 698
SfaNI GCATC 1 cut(s) 839
SfcI CTRYAG 1 cut(s) 1074
Sfr274I CTCGAG 1 cut(s) 1001
SlaI CTCGAG 1 cut(s) 1001
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 1001
SmoI CTYRAG 1 cut(s) 1001
Sse9I AATT 6 cut(s) 133, 254, 364, 776, 803, 966
SsiI CCGC 3 cut(s) 428, 692, 911
SspMI CTAG 1 cut(s) 510
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 2 cut(s) 163, 449
TaiI ACGT 1 cut(s) 65
TaqI TCGA 2 cut(s) 639, 1002
TasI AATT 6 cut(s) 133, 254, 364, 776, 803, 966
TatI WGTACW 2 cut(s) 444, 1044
TfiI GAWTC 4 cut(s) 49, 675, 687, 826
Tru1I TTAA 2 cut(s) 654, 779
Tru9I TTAA 2 cut(s) 654, 779
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 6 cut(s) 302, 425, 575, 589, 707, 1096
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 667, 788
TspGWI ACGGA 1 cut(s) 917
Tth111I GACNNNGTC 1 cut(s) 536
XapI RAATTY 3 cut(s) 364, 803, 966
XhoI CTCGAG 1 cut(s) 1001
XmiI GTMKAC 1 cut(s) 1077
XmnI GAANNNNTTC 4 cut(s) 48, 183, 830, 842
XspI CTAG 1 cut(s) 510
ZrmI AGTACT 1 cut(s) 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.