RchiOBHm_Chr4g0401321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002470
Physical Location & Seq
Reverse (-)
19443994 .. 19444618
625 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37325

Sequence Viewer

Length: 336 bp
ATGATTGATCTCCCTCTCTCTCATTTGAATCCCCGAGTCTCAATTTGCTTATTAATGAACCATGCTAGCCAGGGCTGCATCACCAATTTCACAAGCCCTAAAACTCCATCTCCTACCCTAATAATGGTGTTCGAGGCGAGGTTCTCCTCCTTCAAGAAATCAGACTCCTCCAACAATCCTGATGGCTCCACCAACACCCCCGATCACATGGCTTCAACTCCCCAAGTAGATCTGATAAGAAGAAATCCAAATCCACAGTCAAAGACGATTCCAAAGCCGCGAGTACAAGCTTCGGTGGTGGCGGCGGAGGGGTTTTGGCTCGGCATTGGGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.06

Weight (kDa)

9.24

Isoelectric Point (pI)

32.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 280
AciI CCGC 3 cut(s) 278, 302, 305
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 3 cut(s) 28, 154, 216
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 75
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AseI ATTAAT 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 73
AsuNHI GCTAGC 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 33
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 115, 176
BciT130I CCWGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 2 cut(s) 66, 334
BglII AGATCT 1 cut(s) 229
BisI GCNGC 3 cut(s) 76, 278, 303
BlsI GCNGC 3 cut(s) 77, 279, 304
Bme1390I CCNGG 1 cut(s) 71
BmeT110I CYCGRG 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 87
BmtI GCTAGC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 124
BseRI GAGGAG 2 cut(s) 136, 157
BseXI GCAGC 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 33
Bsp143I GATC 3 cut(s) 7, 202, 229
BspACI CCGC 3 cut(s) 278, 302, 305
BspFNI CGCG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 187
BspOI GCTAGC 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 3 cut(s) 7, 202, 229
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 67
BstFNI CGCG 1 cut(s) 280
BstKTI GATC 3 cut(s) 10, 205, 232
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 3 cut(s) 7, 202, 229
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 284
CviAII CATG 2 cut(s) 62, 208
CviJI RGCY 8 cut(s) 69, 75, 96, 186, 212, 277, 290, 319
CviKI_1 RGCY 8 cut(s) 69, 75, 96, 186, 212, 277, 290, 319
CviQI GTAC 1 cut(s) 284
DpnI GATC 3 cut(s) 9, 204, 231
DpnII GATC 3 cut(s) 7, 202, 229
EciI GGCGGA 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 65, 211
FaiI YATR 2 cut(s) 63, 209
FatI CATG 2 cut(s) 61, 207
Fnu4HI GCNGC 3 cut(s) 76, 278, 303
Fsp4HI GCNGC 3 cut(s) 76, 278, 303
FspBI CTAG 2 cut(s) 66, 334
GluI GCNGC 3 cut(s) 76, 278, 303
Hin1II CATG 2 cut(s) 65, 211
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 4 cut(s) 28, 36, 164, 268
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 163, 234
Hpy188III TCNNGA 2 cut(s) 154, 179
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
Hsp92II CATG 2 cut(s) 65, 211
Kzo9I GATC 3 cut(s) 7, 202, 229
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 3 cut(s) 56, 83, 192
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 87
MaeI CTAG 2 cut(s) 66, 334
MalI GATC 3 cut(s) 9, 204, 231
MboI GATC 3 cut(s) 7, 202, 229
MboII GAAGA 1 cut(s) 252
MflI RGATCY 1 cut(s) 229
MluCI AATT 2 cut(s) 42, 85
MlyI GAGTC 2 cut(s) 45, 158
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 6 cut(s) 24, 127, 132, 157, 178, 301
MseI TTAA 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 3 cut(s) 7, 202, 229
NheI GCTAGC 1 cut(s) 65
NlaIII CATG 2 cut(s) 65, 211
NlaIV GGNNCC 1 cut(s) 187
NmeAIII GCCGAG 1 cut(s) 300
PfeI GAWTC 2 cut(s) 28, 268
PkrI GCNGC 3 cut(s) 77, 279, 304
PleI GAGTC 2 cut(s) 44, 158
PpsI GAGTC 2 cut(s) 44, 158
PshBI ATTAAT 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 187
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 3 cut(s) 76, 278, 303
Sau3AI GATC 3 cut(s) 7, 202, 229
SchI GAGTC 2 cut(s) 45, 158
ScrFI CCNGG 1 cut(s) 71
SetI ASST 2 cut(s) 143, 292
SfaNI GCATC 1 cut(s) 87
Sse9I AATT 2 cut(s) 42, 85
SsiI CCGC 3 cut(s) 278, 302, 305
SspMI CTAG 2 cut(s) 66, 334
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 132
TasI AATT 2 cut(s) 42, 85
TatI WGTACW 1 cut(s) 283
TauI GCSGC 2 cut(s) 280, 305
TfiI GAWTC 2 cut(s) 28, 268
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseI GCWGC 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 71
VspI ATTAAT 1 cut(s) 53
XspI CTAG 2 cut(s) 66, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.