Rroxscaffold_7G00207320

Diphthamide biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002470
Physical Location & Seq
Reverse (-)
57188125 .. 57191180
3056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207320.1

Sequence Viewer

Length: 249 bp
ATGTCGTACGACGACGTGGAGATCGAAGATATGGAGTGGAACGACGAGCTCCAGGCGTACACATACCCATGCCCATGCGGAGACTTGTTCCAGATTACCAAGGAAGACCTGAAATTGGGGGAAGAGATTGCTCGGTGTCCTAGCTGTACTCTCTACATCACCGTCATTTACAACATCGAAGATTTCATGGATAAGAAACCCACCAAACCCTTTGATCCCTCCAAGCAACAATCCCTCACCGTCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CSL

Protein Analysis

82

Amino Acids

9.52

Weight (kDa)

4.1

Isoelectric Point (pI)

77.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_CSL PF05207 4 - 58 2.7e-23 CSL zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 78
AclWI GGATC 1 cut(s) 209
AfaI GTAC 3 cut(s) 8, 59, 148
AfiI CCNNNNNNNGG 1 cut(s) 115
AjiI CACGTC 1 cut(s) 16
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 2 cut(s) 49, 144
AluI AGCT 2 cut(s) 49, 144
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 151, 229
BanII GRGCYC 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 53
BmgBI CACGTC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 51
BsiWI CGTACG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 21, 214
BspACI CCGC 1 cut(s) 78
BspPI GGATC 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 2 cut(s) 21, 214
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 163, 241
Bst6I CTCTTC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 246
BstKTI GATC 2 cut(s) 24, 217
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 21, 214
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 111
BtrI CACGTC 1 cut(s) 16
Csp6I GTAC 3 cut(s) 7, 58, 147
CviAII CATG 3 cut(s) 69, 75, 187
CviJI RGCY 2 cut(s) 49, 144
CviKI_1 RGCY 2 cut(s) 49, 144
CviQI GTAC 3 cut(s) 7, 58, 147
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 23, 216
DpnII GATC 2 cut(s) 21, 214
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 3 cut(s) 72, 78, 190
FaiI YATR 5 cut(s) 32, 64, 70, 76, 188
FatI CATG 3 cut(s) 68, 74, 186
FriOI GRGCYC 1 cut(s) 51
FspBI CTAG 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 35
Hin1II CATG 3 cut(s) 72, 78, 190
HphI GGTGA 2 cut(s) 151, 229
Hpy166II GTNNAC 1 cut(s) 60
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 1 cut(s) 60
Hpy99I CGWCG 4 cut(s) 14, 17, 47, 245
HpyCH4III ACNGT 2 cut(s) 163, 241
HpyCH4IV ACGT 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 3 cut(s) 72, 78, 190
Kzo9I GATC 2 cut(s) 21, 214
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 38, 65, 104, 122
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 15
MalI GATC 2 cut(s) 23, 216
MboI GATC 2 cut(s) 21, 214
MboII GAAGA 4 cut(s) 38, 116, 134, 191
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 1 cut(s) 113
MnlI CCTC 2 cut(s) 229, 245
MslI CAYNNNNRTG 2 cut(s) 67, 73
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
NdeII GATC 2 cut(s) 21, 214
NlaIII CATG 3 cut(s) 72, 78, 190
PcsI WCGNNNNNNNCGW 1 cut(s) 21
Pfl23II CGTACG 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspLI CGTACG 1 cut(s) 6
RsaI GTAC 3 cut(s) 8, 59, 148
RsaNI GTAC 3 cut(s) 7, 58, 147
RseI CAYNNNNRTG 2 cut(s) 67, 73
SacI GAGCTC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 21, 214
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 1 cut(s) 51
SetI ASST 4 cut(s) 18, 51, 111, 146
SmiMI CAYNNNNRTG 2 cut(s) 67, 73
Sse9I AATT 1 cut(s) 113
SsiI CCGC 1 cut(s) 78
SspMI CTAG 1 cut(s) 141
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 163, 241
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 24, 177
TasI AATT 1 cut(s) 113
TatI WGTACW 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 175
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.