pycom05g06430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0002470
Physical Location & Seq
Forward (+)
8784736 .. 8785148
413 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06430.1

Sequence Viewer

Length: 336 bp
ATGGTGTGGGGTAGGGATTACCGGATTGGGTTGGAGGGGGAAGGAGATCGTGATCTCAAGGATGACAAATGGCAAAATTTGAATGGAAGTAGCACGGCTGACGTGGTACTACCGTGCTACTCTAAATTTCTACAATTTTTGTGCTTTTGCACGGTACCAAAACTCAAGCAAACCCTAAATCCAAAATCCAGGGGGAAGCTTTCGCTGAATCAGAAGCTGAAACGATGTCGTACGACGACGTGGAGATCGAAGATATGGAGTGGAACGAGGAGCTGCAGGCTTATACGTACCCGTGCCCGTGCGGTGACGTGTTTCAGATCACAAGGGACGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.84

Weight (kDa)

10.31

Isoelectric Point (pI)

24.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 154
AccB1I GGYRCC 1 cut(s) 154
AciI CCGC 1 cut(s) 302
AcsI RAATTY 2 cut(s) 76, 125
AfaI GTAC 4 cut(s) 108, 156, 232, 289
AflIII ACRYGT 1 cut(s) 308
AgsI TTSAA 1 cut(s) 82
AjiI CACGTC 3 cut(s) 103, 240, 309
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 3 cut(s) 199, 217, 273
AluI AGCT 3 cut(s) 199, 217, 273
AlwNI CAGNNNCTG 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 273
ApoI RAATTY 2 cut(s) 76, 125
Asp718I GGTACC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 298
BaeI ACNNNNGTAYC 2 cut(s) 98, 131
BanI GGYRCC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 190
BfmI CTRYAG 1 cut(s) 274
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 190
BmgBI CACGTC 3 cut(s) 103, 240, 309
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 190
BpuEI CTTGAG 2 cut(s) 41, 149
BsaAI YACGTR 1 cut(s) 287
BsaBI GATNNNNATC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 21
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 67
BseJI GATNNNNATC 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 1 cut(s) 260
BshNI GGYRCC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 22
BsiWI CGTACG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 4 cut(s) 46, 52, 245, 317
BspACI CCGC 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 278
BspT107I GGYRCC 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 4 cut(s) 46, 52, 245, 317
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 114, 154
BstBAI YACGTR 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 278
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 4 cut(s) 49, 55, 248, 320
BstMBI GATC 4 cut(s) 46, 52, 245, 317
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 274
BstSLI GKGCMC 1 cut(s) 298
BstSNI TACGTA 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 260
BtrI CACGTC 3 cut(s) 103, 240, 309
BtsCI GGATG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 278
CaiI CAGNNNCTG 1 cut(s) 217
Csp6I GTAC 4 cut(s) 107, 155, 231, 288
CviJI RGCY 5 cut(s) 98, 199, 217, 273, 280
CviKI_1 RGCY 5 cut(s) 98, 199, 217, 273, 280
CviQI GTAC 4 cut(s) 107, 155, 231, 288
DpnI GATC 4 cut(s) 48, 54, 247, 319
DpnII GATC 4 cut(s) 46, 52, 245, 317
Eco105I TACGTA 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 188
FaiI YATR 2 cut(s) 256, 284
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 274
GluI GCNGC 1 cut(s) 274
HapII CCGG 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 1 cut(s) 208
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 316
Hpy188I TCNGA 2 cut(s) 213, 317
Hpy188III TCNNGA 1 cut(s) 50
Hpy99I CGWCG 2 cut(s) 238, 241
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 2 cut(s) 114, 154
HpyCH4IV ACGT 4 cut(s) 102, 239, 286, 308
HpyCH4V TGCA 2 cut(s) 150, 276
HpySE526I ACGT 4 cut(s) 102, 239, 286, 308
KpnI GGTACC 1 cut(s) 158
Kzo9I GATC 4 cut(s) 46, 52, 245, 317
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 4 cut(s) 35, 175, 202, 262
Lsp1109I GCAGC 1 cut(s) 260
MaeII ACGT 4 cut(s) 102, 239, 286, 308
MaeIII GTNAC 1 cut(s) 304
MalI GATC 4 cut(s) 48, 54, 247, 319
MboI GATC 4 cut(s) 46, 52, 245, 317
MboII GAAGA 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 3 cut(s) 76, 125, 134
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 2 cut(s) 28, 261
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 190
NdeII GATC 4 cut(s) 46, 52, 245, 317
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 245
PfeI GAWTC 1 cut(s) 208
Pfl23II CGTACG 1 cut(s) 230
PkrI GCNGC 1 cut(s) 275
Ppu21I YACGTR 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspLI CGTACG 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 156
PstI CTGCAG 1 cut(s) 278
PstNI CAGNNNCTG 1 cut(s) 217
RsaI GTAC 4 cut(s) 108, 156, 232, 289
RsaNI GTAC 4 cut(s) 107, 155, 231, 288
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 4 cut(s) 46, 52, 245, 317
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 1 cut(s) 298
SetI ASST 8 cut(s) 105, 201, 219, 242, 275, 289, 311, 335
SfcI CTRYAG 1 cut(s) 274
SmlI CTYRAG 2 cut(s) 56, 164
SmoI CTYRAG 2 cut(s) 56, 164
SnaBI TACGTA 1 cut(s) 287
Sse9I AATT 3 cut(s) 76, 125, 134
SsiI CCGC 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 188
TaaI ACNGT 2 cut(s) 114, 154
TaiI ACGT 4 cut(s) 105, 242, 289, 311
TaqI TCGA 1 cut(s) 248
TasI AATT 3 cut(s) 76, 125, 134
TfiI GAWTC 1 cut(s) 208
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 1 cut(s) 273
Tsp45I GTSAC 1 cut(s) 304
XapI RAATTY 2 cut(s) 76, 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.