Rorug05G0591900

Diphthamide biosynthesis protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
78983255 .. 78985314
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0591900.1

Sequence Viewer

Length: 1668 bp
ATGAAAGAATCAAGTCCCAGCAGTGAGCCCATTGGGCAGAACATCATAAAGCTGATAAGCAATCTCTGCTTCTCAGCGTTCGTCTTCTCAGTCCTTATCATCACTGTGATTGCCATCACCTACCAACCCCCAGATCCATGGCTCGAGTCTGCTCCGGCCTTGACAAAACTCTTCACTGAATCCGAGAACGCTACTTTCAAAAACGACAATTCCATCCTTAAGACCGGCGAGGATTTCATTGCCCCGGCTGCCCCTCCGGAGAGCTGGATCACCGAGGCCGTCATTCAGACCACCGAGGCCAACCTCTCCAGTTCCCCACAGCCCGAATCCGAATCCGATTCGGGCTGTGGGGATCTGGAGACAGTGAATTGTTCAGACCCTAGAGTTCTCATTGCGGTTGAGAGGTTCAATTTGAGGCTGTTTAAGACGATCGTGTTTTTGGAGTATCAGAGTCCGGTTAATGGGTCGAAAGCTGATGAGTGTGATGTGTTGTGGAGGTTTAGGAACAAGAAGGAGAAGTCTTGGAGGAGGTATAGGGATTTTAGGAGGTTTAAGTTTGGGTTTGGAGTGAATTGTACCTACAAGGTGGTGCACGCCGGAGGGTGGCATTCCGGTGTGAATGCACGGCGTTCACAGAGGAGTAGGGTTGGTAAGGGGGGTGGTGGAAATGGTAGTAGGATTGCCCCACCGGCTCGTGATGAGGAGATTAATGATACCATACCGAGCTTGGGGGAGAGGAATTTTAGGAGGGGGAAGTACTTGTACTACTCGCGGGGAGGGGATTATTGCAAGGGAATGAATCAGTACATGTGGAGCTTCTTGTGTGGTTTAGGTGAGGCAATGTACTTGAACAGGACATTTGTGGTGGATTTGAGTTTGTGCTTGTCGGGGAGTTATAATCCGAGTAATAAGGATGAGGAAGGGAAGGATTTTCGGTATTATTTTGATTTCGAGCATTTGAAGGAGGTTGCATCAATTGTGGAGGAGGGTGAGTTTTTAAGGGATTGGAAGAAGTGGGATCGGAGCCATAAGAGGAAGCTGCCTGTTAAGAAGGTTGTGAGCCACAAGATTATGCCAATGCAACTCAAGAAAGATAGGAACACGGTTCTATGGAGGCAGTTTGATGCGCCGGAGCCAGAGAATTACTGGTACAGGGTGTGCGAAGGACAAGCTGCCAAGTACATTCAGAGGCCGTGGCATGCTTTGTGGAAGTCAAAGAGATTGATGAACATTGTTTCAGAGATCAGTGGGCGAATGGATTGGGATTTCGATGCTGTTCATGTGGTGCGAGGGGAGAAGGCGAAGAATACGCAGCTCTGGCCTCATCTGGATTATGATACATCCCCCGACCAGCTACTTGAGAAGGTTAAGGGTATGGTTCAGCCTTGGAGGAATCTGTATATAGCCACCAATGAACCTTTTTATAATTACTTTGACAAACTGAGGTCTCAGTACAAGGTTCATTTGCTTGATGATTACAAGGAGTTGTGGAGTAATACAAGCGAGTGGTACAATGAGACTACGACTCTGAACAATGGGAATCCGGTTGAGTTTGATGGGTACATGAGGGTAGAAGTGGATACTGAGGTTCTTTACAGGGCAAAGACGCGAGTGGAAACGTTCTATAATTTGACAAAGGATTGCAAGGATGGAGTCTTTACTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

555

Amino Acids

64.45

Weight (kDa)

8.12

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7074 PF23269 120 - 204 2.7e-36 Domain of unknown function (DUF7074)
DUF7075 PF23272 247 - 540 1.9e-62 Domain of unknown function (DUF7075)
O-FucT PF10250 253 - 488 4.4e-06 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 897, 1425
AccII CGCG 2 cut(s) 772, 1609
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 2 cut(s) 395, 772
AclI AACGTT 1 cut(s) 1619
AclWI GGATC 4 cut(s) 128, 275, 360, 1026
AcsI RAATTY 1 cut(s) 739
AfiI CCNNNNNNNGG 3 cut(s) 461, 603, 728
AflII CTTAAG 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 807
AgsI TTSAA 4 cut(s) 199, 409, 850, 961
AluBI AGCT 9 cut(s) 52, 264, 473, 726, 816, 1039, 1172, 1315, 1354
AluI AGCT 9 cut(s) 52, 264, 473, 726, 816, 1039, 1172, 1315, 1354
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 3 cut(s) 353, 1452, 1511
Alw44I GTGCAC 1 cut(s) 590
AlwI GGATC 4 cut(s) 128, 275, 360, 1026
Ama87I CYCGRG 1 cut(s) 143
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 5 cut(s) 156, 276, 297, 1190, 1319
ApaLI GTGCAC 1 cut(s) 590
ApeKI GCWGC 4 cut(s) 248, 1039, 1172, 1312
ApoI RAATTY 1 cut(s) 739
AseI ATTAAT 1 cut(s) 708
AspLEI GCGC 1 cut(s) 1129
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 4 cut(s) 109, 262, 845, 1001
AvaI CYCGRG 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 594
BaeI ACNNNNGTAYC 2 cut(s) 1572, 1605
BanII GRGCYC 1 cut(s) 30
BarI GAAGNNNNNNTAC 2 cut(s) 746, 778
BauI CACGAG 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 594
BbvI GCAGC 4 cut(s) 235, 1026, 1159, 1324
BccI CCATC 4 cut(s) 122, 221, 1550, 1643
BceAI ACGGC 3 cut(s) 263, 641, 1177
BciVI GTATCC 1 cut(s) 1573
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 3 cut(s) 353, 1452, 1511
BfaI CTAG 1 cut(s) 381
BfrI CTTAAG 1 cut(s) 218
BfuI GTATCC 1 cut(s) 1573
BglI GCCNNNNNGGC 2 cut(s) 34, 689
BisI GCNGC 4 cut(s) 249, 1040, 1173, 1313
BlsI GCNGC 4 cut(s) 250, 1041, 1174, 1314
BmcAI AGTACT 1 cut(s) 758
Bme1390I CCNGG 1 cut(s) 245
BmeT110I CYCGRG 1 cut(s) 143
BmiI GGNNCC 2 cut(s) 1025, 1134
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 3 cut(s) 980, 1114, 1261
BpiI GAAGAC 1 cut(s) 76
BpmI CTGGAG 2 cut(s) 292, 377
BpuEI CTTGAG 2 cut(s) 1070, 1379
BpuMI CCSGG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 1452
BsaJI CCNNGG 6 cut(s) 137, 243, 273, 294, 1193, 1385
BsaWI WCCGGW 4 cut(s) 256, 454, 611, 1543
BsaXI ACNNNNNCTCC 2 cut(s) 977, 1007
Bsc4I CCNNNNNNNGG 3 cut(s) 461, 603, 728
Bse118I RCCGGY 2 cut(s) 224, 688
Bse1I ACTGG 2 cut(s) 309, 1151
Bse3DI GCAATG 3 cut(s) 237, 390, 846
Bse8I GATNNNNATC 1 cut(s) 113
BseAI TCCGGA 1 cut(s) 256
BseDI CCNNGG 6 cut(s) 137, 243, 273, 294, 1193, 1385
BseGI GGATG 4 cut(s) 213, 919, 1340, 1654
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 3 cut(s) 461, 603, 728
BseMI GCAATG 3 cut(s) 237, 390, 846
BseMII CTCAG 5 cut(s) 87, 102, 1433, 1463, 1575
BseNI ACTGG 2 cut(s) 309, 1151
BseRI GAGGAG 4 cut(s) 541, 652, 716, 998
BseSI GKGCMC 1 cut(s) 594
BseXI GCAGC 4 cut(s) 235, 1026, 1159, 1324
BseYI CCCAGC 1 cut(s) 17
Bsh1236I CGCG 2 cut(s) 772, 1609
Bsh1285I CGRYCG 1 cut(s) 432
BshFI GGCC 5 cut(s) 158, 278, 299, 1192, 1321
BsiEI CGRYCG 1 cut(s) 432
BsiHKAI GWGCWC 1 cut(s) 594
BsiHKCI CYCGRG 1 cut(s) 143
BslI CCNNNNNNNGG 3 cut(s) 461, 603, 728
BsmAI GTCTC 3 cut(s) 353, 1452, 1511
BsmI GAATGC 2 cut(s) 607, 625
BsnI GGCC 5 cut(s) 158, 278, 299, 1192, 1321
Bso31I GGTCTC 1 cut(s) 1452
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 30, 594
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 6 cut(s) 133, 267, 352, 429, 1018, 1242
Bsp19I CCATGG 1 cut(s) 137
BspACI CCGC 2 cut(s) 395, 772
BspANI GGCC 5 cut(s) 158, 278, 299, 1192, 1321
BspCNI CTCAG 5 cut(s) 86, 101, 1434, 1462, 1576
BspEI TCCGGA 1 cut(s) 256
BspFNI CGCG 2 cut(s) 772, 1609
BspLI GGNNCC 2 cut(s) 1025, 1134
BspPI GGATC 4 cut(s) 128, 275, 360, 1026
BspTI CTTAAG 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 1452
BsrDI GCAATG 3 cut(s) 237, 390, 846
BsrFI RCCGGY 2 cut(s) 224, 688
BsrI ACTGG 2 cut(s) 309, 1151
BssAI RCCGGY 2 cut(s) 224, 688
BssECI CCNNGG 6 cut(s) 137, 243, 273, 294, 1193, 1385
BssMI GATC 6 cut(s) 133, 267, 352, 429, 1018, 1242
BssSI CACGAG 1 cut(s) 693
BssT1I CCWWGG 2 cut(s) 137, 1385
Bst2BI CACGAG 1 cut(s) 693
Bst4CI ACNGT 3 cut(s) 106, 364, 1105
Bst6I CTCTTC 1 cut(s) 176
BstAFI CTTAAG 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 594, 1200
BstDEI CTNAG 5 cut(s) 73, 88, 1442, 1449, 1584
BstDSI CCRYGG 2 cut(s) 137, 1193
BstF5I GGATG 4 cut(s) 213, 919, 1340, 1654
BstFNI CGCG 2 cut(s) 772, 1609
BstHHI GCGC 1 cut(s) 1129
BstKTI GATC 6 cut(s) 136, 270, 355, 432, 1021, 1245
BstMAI GTCTC 3 cut(s) 353, 1452, 1511
BstMBI GATC 6 cut(s) 133, 267, 352, 429, 1018, 1242
BstMCI CGRYCG 1 cut(s) 432
BstMWI GCNNNNNNNGC 5 cut(s) 34, 66, 248, 689, 1318
BstNSI RCATGY 2 cut(s) 811, 1202
BstSCI CCNGG 1 cut(s) 243
BstSLI GKGCMC 1 cut(s) 594
BstUI CGCG 2 cut(s) 772, 1609
BstV1I GCAGC 4 cut(s) 235, 1026, 1159, 1324
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 2 cut(s) 133, 352
BstXI CCANNNNNNTGG 1 cut(s) 138
BstYI RGATCY 2 cut(s) 133, 352
BsuI GTATCC 1 cut(s) 1573
BsuRI GGCC 5 cut(s) 158, 278, 299, 1192, 1321
BtgI CCRYGG 2 cut(s) 137, 1193
BtsCI GGATG 4 cut(s) 213, 919, 1340, 1654
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 5 cut(s) 28, 102, 174, 369, 1252
Cac8I GCNNGC 2 cut(s) 594, 1200
CfoI GCGC 1 cut(s) 1129
Cfr10I RCCGGY 2 cut(s) 224, 688
CseI GACGC 1 cut(s) 1615
CviAII CATG 5 cut(s) 138, 808, 1199, 1280, 1564
DdeI CTNAG 5 cut(s) 73, 88, 1442, 1449, 1584
DpnI GATC 6 cut(s) 135, 269, 354, 431, 1020, 1244
DpnII GATC 6 cut(s) 133, 267, 352, 429, 1018, 1242
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 137, 1385
Eco24I GRGCYC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 1452
Eco88I CYCGRG 1 cut(s) 143
EcoT14I CCWWGG 2 cut(s) 137, 1385
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 2 cut(s) 137, 1385
FaeI CATG 5 cut(s) 141, 811, 1202, 1283, 1567
FatI CATG 5 cut(s) 137, 807, 1198, 1279, 1563
FauI CCCGC 1 cut(s) 765
Fnu4HI GCNGC 4 cut(s) 249, 1040, 1173, 1313
FokI GGATG 4 cut(s) 200, 926, 1327, 1661
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 4 cut(s) 249, 1040, 1173, 1313
FspBI CTAG 1 cut(s) 381
GlaI GCGC 1 cut(s) 1128
GluI GCNGC 4 cut(s) 249, 1040, 1173, 1313
GsaI CCCAGC 1 cut(s) 21
GsuI CTGGAG 2 cut(s) 292, 377
HaeIII GGCC 5 cut(s) 158, 278, 299, 1192, 1321
HgaI GACGC 1 cut(s) 1615
HhaI GCGC 1 cut(s) 1129
Hin1II CATG 5 cut(s) 141, 811, 1202, 1283, 1567
Hin6I GCGC 1 cut(s) 1127
HinP1I GCGC 1 cut(s) 1127
HphI GGTGA 4 cut(s) 109, 262, 845, 1001
Hpy166II GTNNAC 2 cut(s) 592, 632
Hpy188III TCNNGA 5 cut(s) 257, 356, 695, 1087, 1328
Hpy8I GTNNAC 2 cut(s) 592, 632
HpyAV CCTTC 8 cut(s) 505, 914, 919, 955, 1045, 1157, 1291, 1357
HpyCH4III ACNGT 3 cut(s) 106, 364, 1105
HpyCH4IV ACGT 1 cut(s) 1619
HpyCH4V TGCA 6 cut(s) 592, 623, 789, 971, 1081, 1644
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 66, 248, 689, 1318
HpyF3I CTNAG 5 cut(s) 73, 88, 1442, 1449, 1584
HpySE526I ACGT 1 cut(s) 1619
Hsp92II CATG 5 cut(s) 141, 811, 1202, 1283, 1567
HspAI GCGC 1 cut(s) 1127
Kpn2I TCCGGA 1 cut(s) 256
Kzo9I GATC 6 cut(s) 133, 267, 352, 429, 1018, 1242
LmnI GCTCC 4 cut(s) 157, 813, 1023, 1132
Lsp1109I GCAGC 4 cut(s) 235, 1026, 1159, 1324
LweI GCATC 3 cut(s) 980, 1114, 1261
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 1619
MalI GATC 6 cut(s) 135, 269, 354, 431, 1020, 1244
MboI GATC 6 cut(s) 133, 267, 352, 429, 1018, 1242
MboII GAAGA 4 cut(s) 76, 163, 1021, 1315
MfeI CAATTG 1 cut(s) 975
MflI RGATCY 2 cut(s) 133, 352
MhlI GDGCHC 2 cut(s) 30, 594
MluCI AATT 9 cut(s) 208, 367, 409, 571, 739, 975, 1141, 1426, 1627
MlyI GAGTC 4 cut(s) 155, 460, 1519, 1662
MroI TCCGGA 1 cut(s) 256
MseI TTAA 8 cut(s) 219, 423, 459, 552, 708, 998, 1047, 1368
MslI CAYNNNNRTG 2 cut(s) 104, 612
MspCI CTTAAG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 975
Mva1269I GAATGC 2 cut(s) 607, 625
MvnI CGCG 2 cut(s) 772, 1609
MwoI GCNNNNNNNGC 5 cut(s) 34, 66, 248, 689, 1318
NciI CCSGG 1 cut(s) 245
NcoI CCATGG 1 cut(s) 137
NdeII GATC 6 cut(s) 133, 267, 352, 429, 1018, 1242
NlaIII CATG 5 cut(s) 141, 811, 1202, 1283, 1567
NlaIV GGNNCC 2 cut(s) 1025, 1134
NspI RCATGY 2 cut(s) 811, 1202
PaeI GCATGC 1 cut(s) 1202
PaeR7I CTCGAG 1 cut(s) 143
PciI ACATGT 1 cut(s) 807
PctI GAATGC 2 cut(s) 607, 625
PfeI GAWTC 8 cut(s) 8, 179, 326, 332, 338, 799, 1393, 1540
PkrI GCNGC 4 cut(s) 250, 1041, 1174, 1314
Ple19I CGATCG 1 cut(s) 432
PleI GAGTC 4 cut(s) 154, 459, 1519, 1661
PpsI GAGTC 4 cut(s) 154, 459, 1519, 1661
PscI ACATGT 1 cut(s) 807
PshBI ATTAAT 1 cut(s) 708
PsiI TTATAA 2 cut(s) 897, 1425
Psp1406I AACGTT 1 cut(s) 1619
PspFI CCCAGC 1 cut(s) 17
PspN4I GGNNCC 2 cut(s) 1025, 1134
PspXI VCTCGAGB 1 cut(s) 143
PsuI RGATCY 2 cut(s) 133, 352
PvuI CGATCG 1 cut(s) 432
RseI CAYNNNNRTG 2 cut(s) 104, 612
SaqAI TTAA 8 cut(s) 219, 423, 459, 552, 708, 998, 1047, 1368
SatI GCNGC 4 cut(s) 249, 1040, 1173, 1313
Sau3AI GATC 6 cut(s) 133, 267, 352, 429, 1018, 1242
ScaI AGTACT 1 cut(s) 758
SchI GAGTC 4 cut(s) 155, 460, 1519, 1662
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 2 cut(s) 30, 594
SfaNI GCATC 3 cut(s) 980, 1114, 1261
Sfr274I CTCGAG 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 143
SmiMI CAYNNNNRTG 2 cut(s) 104, 612
SmlI CTYRAG 4 cut(s) 143, 218, 1085, 1358
SmoI CTYRAG 4 cut(s) 143, 218, 1085, 1358
SphI GCATGC 1 cut(s) 1202
Sse9I AATT 9 cut(s) 208, 367, 409, 571, 739, 975, 1141, 1426, 1627
SsiI CCGC 2 cut(s) 395, 772
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 2 cut(s) 137, 1385
TaaI ACNGT 3 cut(s) 106, 364, 1105
TaiI ACGT 1 cut(s) 1622
TaqI TCGA 4 cut(s) 144, 467, 951, 1269
TasI AATT 9 cut(s) 208, 367, 409, 571, 739, 975, 1141, 1426, 1627
TatI WGTACW 6 cut(s) 756, 762, 804, 843, 1179, 1452
TfiI GAWTC 8 cut(s) 8, 179, 326, 332, 338, 799, 1393, 1540
Tru1I TTAA 8 cut(s) 219, 423, 459, 552, 708, 998, 1047, 1368
Tru9I TTAA 8 cut(s) 219, 423, 459, 552, 708, 998, 1047, 1368
TscAI CASTG 5 cut(s) 28, 109, 181, 369, 1252
TseI GCWGC 4 cut(s) 248, 1039, 1172, 1312
TspDTI ATGAA 7 cut(s) 17, 226, 812, 1241, 1268, 1428, 1451
TspRI CASTG 5 cut(s) 28, 109, 181, 369, 1252
Vha464I CTTAAG 1 cut(s) 218
VneI GTGCAC 1 cut(s) 590
VspI ATTAAT 1 cut(s) 708
XapI RAATTY 1 cut(s) 739
XceI RCATGY 2 cut(s) 811, 1202
XcmI CCANNNNNNNNNTGG 2 cut(s) 724, 1143
XhoI CTCGAG 1 cut(s) 143
XspI CTAG 1 cut(s) 381
ZrmI AGTACT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.