RchiOBHm_Chr6g0260771

Diphthamide biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002470
Physical Location & Seq
Reverse (-)
15714344 .. 15717196
2853 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23387

Sequence Viewer

Length: 240 bp
ATGTCGTACGACGACGTGGAGATCGAAGATATGGAGTGGAACGACGAGCTCCAGGCGTACACGTACCCGTGCCCATGCGGAGACTTGTTCCAGATCACCAAGGAAGACCTGAAATTGGGGGAAGAGATCGCTCGGTGCCCTAGTTGTACTCTCTACATCACCGTCGTTTACAACATCGAAGACTTCATCGATAACAAGCCCTTCGAGCCCTCCCAGCAACAATCCCTCACCGTCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CSL

Protein Analysis

79

Amino Acids

9.16

Weight (kDa)

4.05

Isoelectric Point (pI)

86.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_CSL PF05207 4 - 58 4.5e-23 CSL zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 135
AciI CCGC 1 cut(s) 78
AfaI GTAC 4 cut(s) 8, 59, 65, 148
AfiI CCNNNNNNNGG 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 60
AjiI CACGTC 1 cut(s) 16
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 75
AsuHPI GGTGA 3 cut(s) 88, 151, 220
BaeGI GKGCMC 2 cut(s) 74, 140
BanI GGYRCC 1 cut(s) 135
BanII GRGCYC 2 cut(s) 51, 210
BbsI GAAGAC 2 cut(s) 111, 186
Bbv12I GWGCWC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 53
BmgBI CACGTC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 53
BpiI GAAGAC 2 cut(s) 111, 186
BpmI CTGGAG 1 cut(s) 35
Bsa29I ATCGAT 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 53
BseCI ATCGAT 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 115
BseSI GKGCMC 2 cut(s) 74, 140
BseYI CCCAGC 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 135
BshVI ATCGAT 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 51
BsiWI CGTACG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 75
Bsp1286I GDGCHC 4 cut(s) 51, 74, 140, 210
Bsp143I GATC 3 cut(s) 21, 93, 126
BspACI CCGC 1 cut(s) 78
BspDI ATCGAT 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 3 cut(s) 21, 93, 126
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 163, 232
Bst6I CTCTTC 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 237
BstKTI GATC 3 cut(s) 24, 96, 129
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 3 cut(s) 21, 93, 126
BstMWI GCNNNNNNNGC 2 cut(s) 205, 214
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSLI GKGCMC 2 cut(s) 74, 140
BstV2I GAAGAC 2 cut(s) 111, 186
Bsu15I ATCGAT 1 cut(s) 189
BsuTUI ATCGAT 1 cut(s) 189
BtrI CACGTC 1 cut(s) 16
ClaI ATCGAT 1 cut(s) 189
Csp6I GTAC 4 cut(s) 7, 58, 64, 147
CviAII CATG 1 cut(s) 75
CviJI RGCY 3 cut(s) 49, 199, 208
CviKI_1 RGCY 3 cut(s) 49, 199, 208
CviQI GTAC 4 cut(s) 7, 58, 64, 147
DdeI CTNAG 1 cut(s) 237
DpnI GATC 3 cut(s) 23, 95, 128
DpnII GATC 3 cut(s) 21, 93, 126
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 2 cut(s) 51, 210
Eco53kI GAGCTC 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 2 cut(s) 51, 210
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 1 cut(s) 78
FaiI YATR 2 cut(s) 32, 76
FatI CATG 1 cut(s) 74
FriOI GRGCYC 2 cut(s) 51, 210
FspBI CTAG 1 cut(s) 141
GsaI CCCAGC 1 cut(s) 217
GsuI CTGGAG 1 cut(s) 35
Hin1II CATG 1 cut(s) 78
HphI GGTGA 3 cut(s) 88, 151, 220
Hpy166II GTNNAC 2 cut(s) 60, 169
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 2 cut(s) 60, 169
Hpy99I CGWCG 5 cut(s) 14, 17, 47, 167, 236
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 163, 232
HpyCH4IV ACGT 2 cut(s) 15, 62
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 214
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 2 cut(s) 15, 62
Hsp92II CATG 1 cut(s) 78
Kzo9I GATC 3 cut(s) 21, 93, 126
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 5 cut(s) 38, 65, 104, 122, 227
MaeI CTAG 1 cut(s) 141
MaeII ACGT 2 cut(s) 15, 62
MalI GATC 3 cut(s) 23, 95, 128
MboI GATC 3 cut(s) 21, 93, 126
MboII GAAGA 4 cut(s) 38, 116, 134, 191
MhlI GDGCHC 4 cut(s) 51, 74, 140, 210
MluCI AATT 1 cut(s) 113
MnlI CCTC 2 cut(s) 220, 236
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 205, 214
NdeII GATC 3 cut(s) 21, 93, 126
NlaIII CATG 1 cut(s) 78
NlaIV GGNNCC 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 21
Pfl23II CGTACG 1 cut(s) 6
Ppu21I YACGTR 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 1 cut(s) 51
PspLI CGTACG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 137
RsaI GTAC 4 cut(s) 8, 59, 65, 148
RsaNI GTAC 4 cut(s) 7, 58, 64, 147
SacI GAGCTC 1 cut(s) 51
Sau3AI GATC 3 cut(s) 21, 93, 126
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 4 cut(s) 51, 74, 140, 210
SetI ASST 4 cut(s) 18, 51, 65, 111
Sse9I AATT 1 cut(s) 113
SsiI CCGC 1 cut(s) 78
SspMI CTAG 1 cut(s) 141
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 163, 232
TaiI ACGT 2 cut(s) 18, 65
TaqI TCGA 4 cut(s) 24, 177, 189, 204
TasI AATT 1 cut(s) 113
TatI WGTACW 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 175
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.