AT2G16630

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011871
Physical Location & Seq
Forward (+)
7209108 .. 7211134
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16630.1

Sequence Viewer

Length: 1080 bp
ATGGATCCAAATCATAATAATCTTCTCATCTTTGTAGCCTTTTTTGTTCTCTGCTTAGCCACCAATGGTGTAACCGGATATGCCACGGTCACAGGCTCGGTGTTTTGTGACCAATGCAAGGATGGAGAGAGATCTTTGTTTGATTTTCCTGTCTCTGGAATCAAGATTAGTGTCACATGTGCTGATGAAAATGGACAGGTCTATATGTCAAGAGAAGAGACTACTAATTGGCTTGGAGGATATGTAATGAGATTTGATGGGACACCGGATCTAAGTAACTGTTATGCTCAAGTTTCAGACAATGGAGTTCAACAAGACCCAAGTAGCTGCAGCATTGCTTCAGGTCCTGCACAGAAACTTAAACTAATGTTCAGCTTTTTTGGGATTGAAACGTTTGCTGCGGATGCCCTTCTTGCTCAACCAGTTCAGCCAAGTTCTTTTTGTCCTAAACCACCCACAGCTCCGGTCATGCCTCCTCCTCAAGTTCCGGTAATGCCTCCTCCTCAGGTCCCGGTTAAGCCTCATCCTAAGGTCCCGGTTATAAGTCCTGATCCTCCAGCTACATTGCCTCCTCCTAAGGTCCCGGTTATAAGTCCTGATCCTCCAACTACATTGCCTCCTCCTCTGGTCCCGGTCATAAATCTTCCTCCAGTTACATCACCTCCTCAGTTTAAGCTTCCACCATTGCCTCAAATCCCTCCAATGCCATTTGTAGAGCCATCAGCTTGTTCTCACCAGTTGTGGATGAAACCTGAGTACAGATGCTACTGGAGGGCGATAGGTCCAGACACAAAGGTCGCAGTTGCATTTGGGCTAGTAGCCGGGAGAATATACGGCACAGATATGACAGTACGAGAAGCGCTTGACGGGCGAGGAGAAGCCTATAAGACACTTCTAAGAGAGGCAACAACTGCATTGCTCAATTCATACAACTCTCTAGGATTTCCTTATAATTCCGTCGCTGTGATCACATATACCAATCTGGCTCTCCTCGGGAATTCGGAACACGATGTCCTCATGACTGCTATTCGTTTCATCAAGGCTAATTCCGGGACCTGCAGATTCACAGTCTGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

359

Amino Acids

38.81

Weight (kDa)

5.82

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 30 - 101 9.3e-08 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 542, 590, 951
AasI GACNNNNNNGTC 1 cut(s) 794
Acc36I ACCTGC 1 cut(s) 1064
AciI CCGC 1 cut(s) 401
AclI AACGTT 1 cut(s) 392
AclWI GGATC 4 cut(s) 12, 276, 545, 593
AcsI RAATTY 1 cut(s) 997
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 2 cut(s) 758, 852
AfeI AGCGCT 1 cut(s) 861
AfiI CCNNNNNNNGG 2 cut(s) 118, 155
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 2 cut(s) 311, 389
AloI GAACNNNNNNTCC 2 cut(s) 996, 1028
AluBI AGCT 6 cut(s) 327, 375, 461, 560, 676, 725
AluI AGCT 6 cut(s) 327, 375, 461, 560, 676, 725
Alw26I GTCTC 2 cut(s) 157, 212
AlwI GGATC 4 cut(s) 12, 276, 545, 593
AlwNI CAGNNNCTG 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 992
Aor51HI AGCGCT 1 cut(s) 861
ApeKI GCWGC 3 cut(s) 327, 330, 398
ApoI RAATTY 1 cut(s) 997
AspLEI GCGC 1 cut(s) 862
AspS9I GGNCC 7 cut(s) 344, 508, 532, 580, 628, 782, 1053
AsuC2I CCSGG 6 cut(s) 512, 536, 584, 632, 823, 1051
AsuHPI GGTGA 2 cut(s) 651, 725
AvaI CYCGRG 1 cut(s) 992
AvaII GGWCC 7 cut(s) 344, 508, 532, 580, 628, 782, 1053
AxyI CCTNAGG 3 cut(s) 504, 528, 576
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 3 cut(s) 314, 342, 385
BccI CCATC 3 cut(s) 116, 251, 727
BceAI ACGGC 1 cut(s) 850
BclI TGATCA 1 cut(s) 966
BcnI CCSGG 6 cut(s) 512, 536, 584, 632, 823, 1051
BcoDI GTCTC 2 cut(s) 157, 212
BfaI CTAG 2 cut(s) 815, 938
BfmI CTRYAG 2 cut(s) 328, 1057
BfoI RGCGCY 1 cut(s) 863
BfuAI ACCTGC 1 cut(s) 1064
BglII AGATCT 1 cut(s) 131
BisI GCNGC 3 cut(s) 328, 331, 399
BlpI GCTNAGC 1 cut(s) 55
BlsI GCNGC 3 cut(s) 329, 332, 400
Bme1390I CCNGG 6 cut(s) 512, 536, 584, 632, 823, 1051
Bme18I GGWCC 7 cut(s) 344, 508, 532, 580, 628, 782, 1053
BmeT110I CYCGRG 1 cut(s) 992
BmgT120I GGNCC 7 cut(s) 344, 508, 532, 580, 628, 782, 1053
BmiI GGNNCC 6 cut(s) 6, 510, 534, 582, 630, 1054
BmrFI CCNGG 6 cut(s) 512, 536, 584, 632, 823, 1051
BmsI GCATC 2 cut(s) 394, 752
BpmI CTGGAG 3 cut(s) 540, 633, 790
Bpu1102I GCTNAGC 1 cut(s) 55
BpuEI CTTGAG 2 cut(s) 273, 465
BpuMI CCSGG 6 cut(s) 512, 536, 584, 632, 823, 1051
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 84, 991
BsaWI WCCGGW 4 cut(s) 74, 265, 463, 487
BsaXI ACNNNNNCTCC 8 cut(s) 228, 258, 553, 583, 601, 631, 646, 676
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 155
Bse1I ACTGG 4 cut(s) 422, 650, 736, 773
Bse21I CCTNAGG 3 cut(s) 504, 528, 576
Bse3DI GCAATG 5 cut(s) 333, 563, 611, 683, 914
Bse8I GATNNNNATC 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 84, 991
BseGI GGATG 4 cut(s) 127, 409, 523, 750
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 118, 155
BseMI GCAATG 5 cut(s) 333, 563, 611, 683, 914
BseMII CTCAG 3 cut(s) 518, 680, 744
BseNI ACTGG 4 cut(s) 422, 650, 736, 773
BseXI GCAGC 3 cut(s) 314, 342, 385
BsgI GTGCAG 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 992
BslFI GGGAC 6 cut(s) 274, 494, 518, 566, 614, 1066
BslI CCNNNNNNNGG 2 cut(s) 118, 155
BsmAI GTCTC 2 cut(s) 157, 212
BsmFI GGGAC 6 cut(s) 274, 494, 518, 566, 614, 1066
BsoBI CYCGRG 1 cut(s) 992
Bsp143I GATC 6 cut(s) 4, 131, 268, 550, 598, 966
Bsp1720I GCTNAGC 1 cut(s) 55
BspACI CCGC 1 cut(s) 401
BspCNI CTCAG 3 cut(s) 517, 679, 745
BspHI TCATGA 1 cut(s) 1017
BspLI GGNNCC 6 cut(s) 6, 510, 534, 582, 630, 1054
BspMAI CTGCAG 2 cut(s) 332, 1061
BspMI ACCTGC 1 cut(s) 1064
BspPI GGATC 4 cut(s) 12, 276, 545, 593
BsrDI GCAATG 5 cut(s) 333, 563, 611, 683, 914
BsrI ACTGG 4 cut(s) 422, 650, 736, 773
BssECI CCNNGG 2 cut(s) 84, 991
BssMI GATC 6 cut(s) 4, 131, 268, 550, 598, 966
Bst4CI ACNGT 4 cut(s) 88, 281, 850, 1069
Bst6I CTCTTC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 911
BstDEI CTNAG 8 cut(s) 55, 272, 504, 528, 576, 666, 753, 896
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 4 cut(s) 127, 409, 523, 750
BstH2I RGCGCY 1 cut(s) 863
BstHHI GCGC 1 cut(s) 862
BstKTI GATC 6 cut(s) 7, 134, 271, 553, 601, 969
BstMAI GTCTC 2 cut(s) 157, 212
BstMBI GATC 6 cut(s) 4, 131, 268, 550, 598, 966
BstMWI GCNNNNNNNGC 4 cut(s) 404, 413, 868, 911
BstNSI RCATGY 1 cut(s) 180
BstSCI CCNGG 6 cut(s) 510, 534, 582, 630, 821, 1049
BstSFI CTRYAG 2 cut(s) 328, 1057
BstV1I GCAGC 3 cut(s) 314, 342, 385
BstX2I RGATCY 3 cut(s) 4, 131, 268
BstYI RGATCY 3 cut(s) 4, 131, 268
Bsu36I CCTNAGG 3 cut(s) 504, 528, 576
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 4 cut(s) 127, 409, 523, 750
BveI ACCTGC 1 cut(s) 1064
CaiI CAGNNNCTG 1 cut(s) 347
CciI TCATGA 1 cut(s) 1017
CfoI GCGC 1 cut(s) 862
Cfr13I GGNCC 7 cut(s) 344, 508, 532, 580, 628, 782, 1053
Csp6I GTAC 2 cut(s) 757, 851
CviAII CATG 3 cut(s) 177, 469, 1018
CviQI GTAC 2 cut(s) 757, 851
DdeI CTNAG 8 cut(s) 55, 272, 504, 528, 576, 666, 753, 896
DpnI GATC 6 cut(s) 6, 133, 270, 552, 600, 968
DpnII GATC 6 cut(s) 4, 131, 268, 550, 598, 966
DrdI GACNNNNNNGTC 1 cut(s) 794
DseDI GACNNNNNNGTC 1 cut(s) 794
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco47I GGWCC 7 cut(s) 344, 508, 532, 580, 628, 782, 1053
Eco47III AGCGCT 1 cut(s) 861
Eco57I CTGAAG 1 cut(s) 324
Eco81I CCTNAGG 3 cut(s) 504, 528, 576
Eco88I CYCGRG 1 cut(s) 992
EcoO109I RGGNCCY 5 cut(s) 344, 508, 532, 580, 1053
EcoRI GAATTC 1 cut(s) 997
FaeI CATG 3 cut(s) 180, 472, 1021
FaqI GGGAC 6 cut(s) 274, 494, 518, 566, 614, 1066
FatI CATG 3 cut(s) 176, 468, 1017
FbaI TGATCA 1 cut(s) 966
Fnu4HI GCNGC 3 cut(s) 328, 331, 399
FokI GGATG 4 cut(s) 134, 416, 510, 757
Fsp4HI GCNGC 3 cut(s) 328, 331, 399
FspBI CTAG 2 cut(s) 815, 938
GlaI GCGC 1 cut(s) 861
GluI GCNGC 3 cut(s) 328, 331, 399
GsuI CTGGAG 3 cut(s) 540, 633, 790
HaeII RGCGCY 1 cut(s) 863
HhaI GCGC 1 cut(s) 862
Hin1II CATG 3 cut(s) 180, 472, 1021
Hin6I GCGC 1 cut(s) 860
HinP1I GCGC 1 cut(s) 860
HindIII AAGCTT 1 cut(s) 674
HinfI GANTC 2 cut(s) 159, 1062
HphI GGTGA 2 cut(s) 651, 725
Hpy188I TCNGA 2 cut(s) 298, 1003
Hpy188III TCNNGA 8 cut(s) 156, 163, 210, 548, 596, 785, 994, 1018
Hpy99I CGWCG 1 cut(s) 962
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 4 cut(s) 88, 281, 850, 1069
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 7 cut(s) 117, 330, 350, 806, 914, 1059, 1074
HpyF10VI GCNNNNNNNGC 4 cut(s) 404, 413, 868, 911
HpyF3I CTNAG 8 cut(s) 55, 272, 504, 528, 576, 666, 753, 896
HpySE526I ACGT 1 cut(s) 392
Hsp92II CATG 3 cut(s) 180, 472, 1021
HspAI GCGC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 966
Kzo9I GATC 6 cut(s) 4, 131, 268, 550, 598, 966
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 3 cut(s) 314, 342, 385
LweI GCATC 2 cut(s) 394, 752
MaeI CTAG 2 cut(s) 815, 938
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 6 cut(s) 70, 88, 107, 172, 275, 652
MalI GATC 6 cut(s) 6, 133, 270, 552, 600, 968
MboI GATC 6 cut(s) 4, 131, 268, 550, 598, 966
MboII GAAGA 3 cut(s) 14, 227, 635
MfeI CAATTG 1 cut(s) 1075
MflI RGATCY 3 cut(s) 4, 131, 268
MluCI AATT 6 cut(s) 226, 922, 952, 997, 1045, 1075
MmeI TCCRAC 1 cut(s) 629
MseI TTAA 3 cut(s) 360, 516, 672
MslI CAYNNNNRTG 1 cut(s) 842
MspR9I CCNGG 6 cut(s) 512, 536, 584, 632, 823, 1051
MunI CAATTG 1 cut(s) 1075
MwoI GCNNNNNNNGC 4 cut(s) 404, 413, 868, 911
NciI CCSGG 6 cut(s) 512, 536, 584, 632, 823, 1051
NdeII GATC 6 cut(s) 4, 131, 268, 550, 598, 966
NlaIII CATG 3 cut(s) 180, 472, 1021
NlaIV GGNNCC 6 cut(s) 6, 510, 534, 582, 630, 1054
NmuCI GTSAC 3 cut(s) 88, 107, 172
NspI RCATGY 1 cut(s) 180
PagI TCATGA 1 cut(s) 1017
PciI ACATGT 1 cut(s) 176
PfeI GAWTC 2 cut(s) 159, 1062
PfoI TCCNGGA 1 cut(s) 1049
PkrI GCNGC 3 cut(s) 329, 332, 400
PpuMI RGGWCCY 5 cut(s) 344, 508, 532, 580, 1053
PscI ACATGT 1 cut(s) 176
PsiI TTATAA 3 cut(s) 542, 590, 951
Psp1406I AACGTT 1 cut(s) 392
Psp5II RGGWCCY 5 cut(s) 344, 508, 532, 580, 1053
PspN4I GGNNCC 6 cut(s) 6, 510, 534, 582, 630, 1054
PspPI GGNCC 7 cut(s) 344, 508, 532, 580, 628, 782, 1053
PspPPI RGGWCCY 5 cut(s) 344, 508, 532, 580, 1053
PstI CTGCAG 2 cut(s) 332, 1061
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 3 cut(s) 4, 131, 268
RsaI GTAC 2 cut(s) 758, 852
RsaNI GTAC 2 cut(s) 757, 851
RseI CAYNNNNRTG 1 cut(s) 842
SaqAI TTAA 3 cut(s) 360, 516, 672
SatI GCNGC 3 cut(s) 328, 331, 399
Sau3AI GATC 6 cut(s) 4, 131, 268, 550, 598, 966
Sau96I GGNCC 7 cut(s) 344, 508, 532, 580, 628, 782, 1053
ScrFI CCNGG 6 cut(s) 512, 536, 584, 632, 823, 1051
SfaNI GCATC 2 cut(s) 394, 752
SfcI CTRYAG 2 cut(s) 328, 1057
SinI GGWCC 7 cut(s) 344, 508, 532, 580, 628, 782, 1053
SmiMI CAYNNNNRTG 1 cut(s) 842
SmlI CTYRAG 2 cut(s) 288, 480
SmoI CTYRAG 2 cut(s) 288, 480
Sse9I AATT 6 cut(s) 226, 922, 952, 997, 1045, 1075
SsiI CCGC 1 cut(s) 401
SspMI CTAG 2 cut(s) 815, 938
StyD4I CCNGG 6 cut(s) 510, 534, 582, 630, 821, 1049
TaaI ACNGT 4 cut(s) 88, 281, 850, 1069
TaiI ACGT 1 cut(s) 395
TasI AATT 6 cut(s) 226, 922, 952, 997, 1045, 1075
TatI WGTACW 1 cut(s) 756
TfiI GAWTC 2 cut(s) 159, 1062
Tru1I TTAA 3 cut(s) 360, 516, 672
Tru9I TTAA 3 cut(s) 360, 516, 672
TseFI GTSAC 3 cut(s) 88, 107, 172
TseI GCWGC 3 cut(s) 327, 330, 398
Tsp45I GTSAC 3 cut(s) 88, 107, 172
TspDTI ATGAA 4 cut(s) 201, 761, 915, 1024
TspGWI ACGGA 1 cut(s) 946
VpaK11BI GGWCC 7 cut(s) 344, 508, 532, 580, 628, 782, 1053
XapI RAATTY 1 cut(s) 997
XceI RCATGY 1 cut(s) 180
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XspI CTAG 2 cut(s) 815, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.