pycom05g11120

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011871
Physical Location & Seq
Forward (+)
14591173 .. 14592097
925 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g11120.1

Sequence Viewer

Length: 492 bp
ATGGATTGGCCGGAGAATTTAATTTTGGCAGCAATTCTGGTTTTGTGTGCAGCCATTGATGGAGCTCAGGCAAATACAATGGTGAGTGGCACTGTCTTCTGTGACCAATGCAAAGATGGTGAAAGATCCCTCTTTGATTACCCCATCTATGGAGTTAAAGTACAAGTGGCATGTAGTGACAGTAATGGGCAGATCACAATGTCAAGGGAGGAGACTACAAATTTGTTCGGAAACTATGCCATCAAGTTTGATGGGACACCAGACTTGAGTGGTTGTTATGCTCAGGTTTCTTCAAGCACAGGTAGTGGCTGTGTGGTTAGTGCCGGTCCTGCTCAAAGTCTTAAACTTATGTTTAGGATGTTTGACATGGAGATGTATGTCGTCGACTCTTTGCTCACTCAGCCTGCTCAGCCTATGTCTTTTTGCCCTAAGTCATCTTATAATCCTGTGCCTGCACCCGTAACGCCGGTTAACCCTCCGCCTAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

164

Amino Acids

17.47

Weight (kDa)

4.38

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 28 - 107 9.6e-13 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 441
AccI GTMKAC 1 cut(s) 384
AciI CCGC 1 cut(s) 479
AclWI GGATC 1 cut(s) 120
AcoI YGGCCR 1 cut(s) 8
AcsI RAATTY 2 cut(s) 16, 220
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 294
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 1 cut(s) 120
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 29, 50
ApoI RAATTY 2 cut(s) 16, 220
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 94, 131
AvaII GGWCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 2 cut(s) 41, 62
BccI CCATC 5 cut(s) 53, 110, 152, 245, 248
BcoDI GTCTC 1 cut(s) 206
BisI GCNGC 2 cut(s) 30, 51
BlpI GCTNAGC 1 cut(s) 408
BlsI GCNGC 2 cut(s) 31, 52
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 88
Bpu10I CCTNAGC 2 cut(s) 66, 282
Bpu1102I GCTNAGC 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse118I RCCGGY 2 cut(s) 323, 466
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 4 cut(s) 80, 296, 413, 422
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 2 cut(s) 41, 62
BsgI GTGCAG 2 cut(s) 69, 438
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 3 cut(s) 11, 324, 467
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 125, 192
Bsp1720I GCTNAGC 1 cut(s) 408
BspACI CCGC 1 cut(s) 479
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 4 cut(s) 79, 295, 412, 421
BspPI GGATC 1 cut(s) 120
BsrFI RCCGGY 2 cut(s) 323, 466
BssAI RCCGGY 2 cut(s) 323, 466
BssMI GATC 2 cut(s) 125, 192
Bst4CI ACNGT 2 cut(s) 94, 182
BstC8I GCNNGC 2 cut(s) 405, 453
BstDEI CTNAG 5 cut(s) 66, 282, 399, 408, 429
BstF5I GGATG 1 cut(s) 363
BstKTI GATC 2 cut(s) 128, 195
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 2 cut(s) 125, 192
BstMWI GCNNNNNNNGC 3 cut(s) 329, 400, 409
BstNSI RCATGY 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 41, 62
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 405, 453
Cfr10I RCCGGY 2 cut(s) 323, 466
Cfr13I GGNCC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 161
CviAII CATG 3 cut(s) 171, 367, 489
CviJI RGCY 6 cut(s) 10, 53, 65, 309, 403, 412
CviKI_1 RGCY 6 cut(s) 10, 53, 65, 309, 403, 412
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 5 cut(s) 66, 282, 399, 408, 429
DpnI GATC 2 cut(s) 127, 194
DpnII GATC 2 cut(s) 125, 192
EaeI YGGCCR 1 cut(s) 8
EciI GGCGGA 1 cut(s) 468
Ecl136II GAGCTC 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 326
Eco53kI GAGCTC 1 cut(s) 65
EcoICRI GAGCTC 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 67
FaeI CATG 3 cut(s) 174, 370, 492
FaqI GGGAC 1 cut(s) 268
FatI CATG 3 cut(s) 170, 366, 488
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 2 cut(s) 30, 51
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 2 cut(s) 30, 51
GluI GCNGC 2 cut(s) 30, 51
HaeIII GGCC 1 cut(s) 10
HapII CCGG 3 cut(s) 11, 324, 467
Hin1II CATG 3 cut(s) 174, 370, 492
HincII GTYRAC 2 cut(s) 385, 472
HindII GTYRAC 2 cut(s) 385, 472
HinfI GANTC 1 cut(s) 386
HpaI GTTAAC 1 cut(s) 472
HpaII CCGG 3 cut(s) 11, 324, 467
HphI GGTGA 2 cut(s) 94, 131
Hpy166II GTNNAC 2 cut(s) 385, 472
Hpy188I TCNGA 1 cut(s) 230
Hpy8I GTNNAC 2 cut(s) 385, 472
Hpy99I CGWCG 1 cut(s) 386
HpyCH4III ACNGT 2 cut(s) 94, 182
HpyCH4V TGCA 3 cut(s) 50, 111, 455
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 400, 409
HpyF3I CTNAG 5 cut(s) 66, 282, 399, 408, 429
Hsp92II CATG 3 cut(s) 174, 370, 492
KspAI GTTAAC 1 cut(s) 472
Kzo9I GATC 2 cut(s) 125, 192
LmnI GCTCC 1 cut(s) 62
Lsp1109I GCAGC 2 cut(s) 41, 62
MaeIII GTNAC 3 cut(s) 101, 176, 460
MalI GATC 2 cut(s) 127, 194
MboI GATC 2 cut(s) 125, 192
MboII GAAGA 2 cut(s) 88, 282
MflI RGATCY 1 cut(s) 125
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 4 cut(s) 16, 21, 33, 220
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 3 cut(s) 140, 202, 486
MseI TTAA 4 cut(s) 20, 156, 342, 471
MslI CAYNNNNRTG 1 cut(s) 371
MspI CCGG 3 cut(s) 11, 324, 467
MwoI GCNNNNNNNGC 3 cut(s) 329, 400, 409
NdeII GATC 2 cut(s) 125, 192
NlaIII CATG 3 cut(s) 174, 370, 492
NmuCI GTSAC 2 cut(s) 101, 176
NspI RCATGY 1 cut(s) 174
PkrI GCNGC 2 cut(s) 31, 52
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PsiI TTATAA 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 326
PsuI RGATCY 1 cut(s) 125
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 67
SalI GTCGAC 1 cut(s) 383
SaqAI TTAA 4 cut(s) 20, 156, 342, 471
SatI GCNGC 2 cut(s) 30, 51
Sau3AI GATC 2 cut(s) 125, 192
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 1 cut(s) 380
SduI GDGCHC 1 cut(s) 67
SetI ASST 3 cut(s) 67, 288, 304
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 4 cut(s) 16, 21, 33, 220
SsiI CCGC 1 cut(s) 479
SstI GAGCTC 1 cut(s) 67
TaaI ACNGT 2 cut(s) 94, 182
TaqI TCGA 1 cut(s) 384
TasI AATT 4 cut(s) 16, 21, 33, 220
TatI WGTACW 1 cut(s) 160
Tru1I TTAA 4 cut(s) 20, 156, 342, 471
Tru9I TTAA 4 cut(s) 20, 156, 342, 471
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 2 cut(s) 101, 176
TseI GCWGC 2 cut(s) 29, 50
Tsp45I GTSAC 2 cut(s) 101, 176
TspRI CASTG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 2 cut(s) 16, 220
XceI RCATGY 1 cut(s) 174
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.