Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011871

Physical Location & Seq

Genomic Coordinates Reverse (-)

3183647 .. 3186324

Gene Structure 2678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG021400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCAAGGGAGGAGACTACCAATTGGTTTGGGAACTATGCTATGCAATTTGATGGGACACCAGATTTGAGCGGCTGTTATGCCAAGGTTTTAAGCTCAGGGCAAGGCTCATGTGGGATTCCTGCTGGCCCTGCTCAGAGTCTTAAACTTGTGTTTAGGATGTTTGGCATGGGAATGTATGCTGTGGACTCTTTGCTCACTCAGCCTGCTCAGCCTATGTCATTTTGCCCAAAGTCATCTAATCCTGTGCCTGCTCCTGTAACACCGGCGCCGCCTAGACAAGTAGCACCGGCTCCTCCTAGGCAAGTAACACCGGCACCACCTAGACAAGTAACGCCAGCCAGTCCTCCACCTTTCAGGCTTCCCCCAATTGCTCCATTGCCGCCAATGCCTCACTTGCCACCATTGCCGCCACTGCCACCGCTACCACCAATGCCACCAATGCCCTTCTTGGAACTCACAGCATGCCCACATCAGAGTTGGACAAGGCCAGAGTACAAATGCTACTGGAGGGCAGTGAATCCAGACACAAAGGTAGCTGTTGTTTTCGGATTGCTTGCAGCAAGAAGATATGGGACTGACCTAACATTGTGGCAAGGCCTACAGGGAAGAGGAGACCCTTATAGGACTCTCCTAAGGGAAGGCATCACTGCCTTTCTCAACTCCTACAACAGTCTTCAATTTCCTTACAATACCATTGCTGTTGTGCAGCATATGAATTCTGGATTGATGGGTTCCGAGAGGAATGTCCTCTATACAGCCTTGAGGTTCATCAGGGCTAATTCAGGCTATGGCAAAGTCACCTGCAAATTTACTTCTTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

275

Amino Acids

30.1

Weight (kDa)

9.59

Isoelectric Point (pI)

60.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16630
fragaria_vesca	FvH4_2g01740
malus_domestica	MD05G1116900.v1.1 MD10G1120000.v1.1 MD10G1120100.v1.1
prunus_persica	Prupe.8G161400_v2.0.a1 Prupe.8G161400_v2.0.a1
pyrus_communis	pycom05g11120 pycom10g10340
rosa_chinensis	RchiOBHm_Chr6g0244771
rosa_laevigata	RLG00000015330
rosa_multiflora	Rmu_sc0002064.1_g000006 Rmu_sc0009252.1_g000008 Rmu_sc0012997.1_g000003
rosa_roxburghii	Rroxscaffold_7G00215510
rosa_rugosa	Rorug05G0510500
rosa_samantha	Rh6AG025700 Rh6BG021400
rosa_wichuraiana	Rw6G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	812
Acc36I	ACCTGC	1 cut(s)	812
AccB1I	GGYRCC	2 cut(s)	268, 316
AccBSI	CCGCTC	1 cut(s)	72
AciI	CCGC	5 cut(s)	72, 272, 383, 410, 422
AcsI	RAATTY	2 cut(s)	718, 809
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	1 cut(s)	497
AgsI	TTSAA	1 cut(s)	680
AluBI	AGCT	2 cut(s)	96, 539
AluI	AGCT	2 cut(s)	96, 539
Alw26I	GTCTC	2 cut(s)	8, 609
AoxI	GGCC	3 cut(s)	127, 488, 598
ApeKI	GCWGC	2 cut(s)	560, 709
ApoI	RAATTY	2 cut(s)	718, 809
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
AspA2I	CCTAGG	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	793
AvrII	CCTAGG	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	635
BanI	GGYRCC	2 cut(s)	268, 316
BbsI	GAAGAC	1 cut(s)	668
BbvI	GCAGC	2 cut(s)	572, 721
BccI	CCATC	2 cut(s)	47, 724
BcoDI	GTCTC	2 cut(s)	8, 609
BfaI	CTAG	3 cut(s)	276, 300, 324
BfmI	CTRYAG	1 cut(s)	602
BfoI	RGCGCY	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	812
BisI	GCNGC	6 cut(s)	73, 272, 383, 410, 561, 710
BlnI	CCTAGG	1 cut(s)	299
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	6 cut(s)	74, 273, 384, 411, 562, 711
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	4 cut(s)	270, 294, 318, 736
BmsI	GCATC	1 cut(s)	654
BpiI	GAAGAC	1 cut(s)	668
BpmI	CTGGAG	1 cut(s)	529
Bpu10I	CCTNAGC	1 cut(s)	97
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	784
BsaHI	GRCGYC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	609
BsaJI	CCNNGG	2 cut(s)	84, 299
Bse118I	RCCGGY	3 cut(s)	265, 289, 313
Bse1I	ACTGG	2 cut(s)	342, 512
Bse21I	CCTNAGG	1 cut(s)	635
Bse3DI	GCAATG	3 cut(s)	377, 404, 696
BseDI	CCNNGG	2 cut(s)	84, 299
BseGI	GGATG	1 cut(s)	165
BseMI	GCAATG	3 cut(s)	377, 404, 696
BseMII	CTCAG	4 cut(s)	111, 149, 215, 224
BseNI	ACTGG	2 cut(s)	342, 512
BseRI	GAGGAG	3 cut(s)	26, 285, 627
BseXI	GCAGC	2 cut(s)	572, 721
BsgI	GTGCAG	1 cut(s)	728
BshFI	GGCC	3 cut(s)	129, 490, 600
BshNI	GGYRCC	2 cut(s)	268, 316
BsiSI	CCGG	3 cut(s)	266, 290, 314
BslFI	GGGAC	2 cut(s)	70, 589
BsmAI	GTCTC	2 cut(s)	8, 609
BsmFI	GGGAC	2 cut(s)	70, 589
BsnI	GGCC	3 cut(s)	129, 490, 600
Bso31I	GGTCTC	1 cut(s)	609
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	5 cut(s)	72, 272, 383, 410, 422
BspANI	GGCC	3 cut(s)	129, 490, 600
BspCNI	CTCAG	4 cut(s)	110, 148, 214, 223
BspLI	GGNNCC	4 cut(s)	270, 294, 318, 736
BspMI	ACCTGC	1 cut(s)	812
BspT107I	GGYRCC	2 cut(s)	268, 316
BspTNI	GGTCTC	1 cut(s)	609
BsrBI	CCGCTC	1 cut(s)	72
BsrDI	GCAATG	3 cut(s)	377, 404, 696
BsrFI	RCCGGY	3 cut(s)	265, 289, 313
BsrI	ACTGG	2 cut(s)	342, 512
BssAI	RCCGGY	3 cut(s)	265, 289, 313
BssECI	CCNNGG	2 cut(s)	84, 299
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	2 cut(s)	84, 299
Bst4CI	ACNGT	1 cut(s)	674
Bst6I	CTCTTC	1 cut(s)	604
BstACI	GRCGYC	1 cut(s)	269
BstC8I	GCNNGC	6 cut(s)	127, 207, 252, 339, 466, 558
BstDEI	CTNAG	5 cut(s)	97, 135, 201, 210, 635
BstF5I	GGATG	1 cut(s)	165
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstMAI	GTCTC	2 cut(s)	8, 609
BstMWI	GCNNNNNNNGC	8 cut(s)	131, 202, 211, 388, 397, 406, 415, 442
BstNSI	RCATGY	1 cut(s)	468
BstSFI	CTRYAG	1 cut(s)	602
BstV1I	GCAGC	2 cut(s)	572, 721
BstV2I	GAAGAC	1 cut(s)	668
Bsu36I	CCTNAGG	1 cut(s)	635
BsuRI	GGCC	3 cut(s)	129, 490, 600
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	3 cut(s)	413, 522, 648
BtsIMutI	CAGTG	3 cut(s)	413, 522, 648
BveI	ACCTGC	1 cut(s)	812
Cac8I	GCNNGC	6 cut(s)	127, 207, 252, 339, 466, 558
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	3 cut(s)	265, 289, 313
Cfr13I	GGNCC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	3 cut(s)	111, 169, 465
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	5 cut(s)	97, 135, 201, 210, 635
DinI	GGCGCC	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	604
Eco130I	CCWWGG	2 cut(s)	84, 299
Eco147I	AGGCCT	1 cut(s)	600
Eco31I	GGTCTC	1 cut(s)	609
Eco81I	CCTNAGG	1 cut(s)	635
EcoRI	GAATTC	1 cut(s)	718
EcoT14I	CCWWGG	2 cut(s)	84, 299
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	2 cut(s)	84, 299
FaeI	CATG	3 cut(s)	114, 172, 468
FaqI	GGGAC	2 cut(s)	70, 589
FatI	CATG	3 cut(s)	110, 168, 464
FauNDI	CATATG	1 cut(s)	714
Fnu4HI	GCNGC	6 cut(s)	73, 272, 383, 410, 561, 710
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	6 cut(s)	73, 272, 383, 410, 561, 710
FspBI	CTAG	3 cut(s)	276, 300, 324
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	6 cut(s)	73, 272, 383, 410, 561, 710
GsuI	CTGGAG	1 cut(s)	529
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	129, 490, 600
HapII	CCGG	3 cut(s)	266, 290, 314
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	114, 172, 468
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	5 cut(s)	118, 139, 188, 520, 628
HpaII	CCGG	3 cut(s)	266, 290, 314
HphI	GGTGA	1 cut(s)	793
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	4 cut(s)	138, 477, 551, 739
Hpy188III	TCNNGA	2 cut(s)	524, 723
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	457, 635
HpyCH4III	ACNGT	1 cut(s)	674
HpyCH4V	TGCA	5 cut(s)	46, 560, 709, 807, 822
HpyF10VI	GCNNNNNNNGC	8 cut(s)	131, 202, 211, 388, 397, 406, 415, 442
HpyF3I	CTNAG	5 cut(s)	97, 135, 201, 210, 635
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	3 cut(s)	114, 172, 468
HspAI	GCGC	1 cut(s)	269
KasI	GGCGCC	1 cut(s)	268
LmnI	GCTCC	3 cut(s)	259, 298, 379
Lsp1109I	GCAGC	2 cut(s)	572, 721
LweI	GCATC	1 cut(s)	654
MaeI	CTAG	3 cut(s)	276, 300, 324
MaeIII	GTNAC	4 cut(s)	259, 307, 331, 799
MbiI	CCGCTC	1 cut(s)	72
MboII	GAAGA	3 cut(s)	579, 621, 668
MfeI	CAATTG	2 cut(s)	22, 369
MluCI	AATT	7 cut(s)	22, 47, 369, 680, 718, 781, 809
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	3 cut(s)	148, 182, 622
MmeI	TCCRAC	1 cut(s)	461
MnlI	CCTC	9 cut(s)	4, 306, 357, 402, 504, 605, 735, 759, 761
MseI	TTAA	2 cut(s)	92, 144
MslI	CAYNNNNRTG	1 cut(s)	173
MspI	CCGG	3 cut(s)	266, 290, 314
MunI	CAATTG	2 cut(s)	22, 369
MwoI	GCNNNNNNNGC	8 cut(s)	131, 202, 211, 388, 397, 406, 415, 442
NarI	GGCGCC	1 cut(s)	269
NdeI	CATATG	1 cut(s)	714
NlaIII	CATG	3 cut(s)	114, 172, 468
NlaIV	GGNNCC	4 cut(s)	270, 294, 318, 736
NmuCI	GTSAC	1 cut(s)	799
NspI	RCATGY	1 cut(s)	468
PaeI	GCATGC	1 cut(s)	468
PaqCI	CACCTGC	1 cut(s)	812
PceI	AGGCCT	1 cut(s)	600
PfeI	GAWTC	2 cut(s)	118, 520
PkrI	GCNGC	6 cut(s)	74, 273, 384, 411, 562, 711
PleI	GAGTC	3 cut(s)	147, 182, 622
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	3 cut(s)	147, 182, 622
PspN4I	GGNNCC	4 cut(s)	270, 294, 318, 736
PspPI	GGNCC	1 cut(s)	128
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	92, 144
SatI	GCNGC	6 cut(s)	73, 272, 383, 410, 561, 710
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	3 cut(s)	148, 182, 622
SetI	ASST	9 cut(s)	90, 98, 325, 355, 537, 541, 585, 770, 806
SfaNI	GCATC	1 cut(s)	654
SfcI	CTRYAG	1 cut(s)	602
SfoI	GGCGCC	1 cut(s)	270
SgrAI	CRCCGGYG	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	763
SmoI	CTYRAG	1 cut(s)	763
SphI	GCATGC	1 cut(s)	468
Sse9I	AATT	7 cut(s)	22, 47, 369, 680, 718, 781, 809
SseBI	AGGCCT	1 cut(s)	600
SsiI	CCGC	5 cut(s)	72, 272, 383, 410, 422
SspDI	GGCGCC	1 cut(s)	268
SspMI	CTAG	3 cut(s)	276, 300, 324
StuI	AGGCCT	1 cut(s)	600
StyI	CCWWGG	2 cut(s)	84, 299
TaaI	ACNGT	1 cut(s)	674
TasI	AATT	7 cut(s)	22, 47, 369, 680, 718, 781, 809
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	4 cut(s)	75, 274, 385, 412
TfiI	GAWTC	2 cut(s)	118, 520
Tru1I	TTAA	2 cut(s)	92, 144
Tru9I	TTAA	2 cut(s)	92, 144
TscAI	CASTG	3 cut(s)	420, 522, 655
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	2 cut(s)	560, 709
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	2 cut(s)	731, 760
TspRI	CASTG	3 cut(s)	420, 522, 655
XapI	RAATTY	2 cut(s)	718, 809
XceI	RCATGY	1 cut(s)	468
XcmI	CCANNNNNNNNNTGG	1 cut(s)	477
XmaJI	CCTAGG	1 cut(s)	299
XspI	CTAG	3 cut(s)	276, 300, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.