Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011871

Physical Location & Seq

Genomic Coordinates Forward (+)

19686468 .. 19687579

Gene Structure 1112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1120100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCCCTTCTTGGAAGCTACAGCATGCCCACATCAACAGTGGACACTACCAGAGCACAAATGCTACTGGAGGGCAGTGAACCCGAACACGAAGGTAGCCGTTATTTTTGGACCGGTGGTGGCTAGGAGATATGGGACTGACCTCACATTGTGGCAAGGCCTACAGGGAAGAGGAGACCCTTATAGGACACTCCTAAGGGAAGGGATCACTGCATTTCTCAACTCCTACAGCAGCCTTCAATTTCCTTACAATTCAATTGCTGTGGTTCAGCATTTGAATTGGGCCTTGATGGGCTCCAACAGAAATGTCCTCCTTAAAGGATTGAGGTTCATTAGGGCTAATTCAGGTTATGGGAAAGTCCCTTGCAAATTTACTGCTTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

129

Amino Acids

14.5

Weight (kDa)

9.91

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16630
fragaria_vesca	FvH4_2g01740
malus_domestica	MD05G1116900.v1.1 MD10G1120000.v1.1 MD10G1120100.v1.1
prunus_persica	Prupe.8G161400_v2.0.a1 Prupe.8G161400_v2.0.a1
pyrus_communis	pycom05g11120 pycom10g10340
rosa_chinensis	RchiOBHm_Chr6g0244771
rosa_laevigata	RLG00000015330
rosa_multiflora	Rmu_sc0002064.1_g000006 Rmu_sc0009252.1_g000008 Rmu_sc0012997.1_g000003
rosa_roxburghii	Rroxscaffold_7G00215510
rosa_rugosa	Rorug05G0510500
rosa_samantha	Rh6AG025700 Rh6BG021400
rosa_wichuraiana	Rw6G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	368
AdeI	CACNNNGTG	1 cut(s)	150
AgeI	ACCGGT	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	239, 255, 277
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	2 cut(s)	157, 282
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	368
AsiGI	ACCGGT	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	110, 282
AvaII	GGWCC	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	3 cut(s)	18, 161, 226
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	110, 282
BmiI	GGNNCC	1 cut(s)	295
BpmI	CTGGAG	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	71
Bse21I	CCTNAGG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	243
BshFI	GGCC	2 cut(s)	159, 284
BshTI	ACCGGT	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	2 cut(s)	148, 344
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	2 cut(s)	148, 344
BsnI	GGCC	2 cut(s)	159, 284
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	57, 296
Bsp143I	GATC	1 cut(s)	204
BspANI	GGCC	2 cut(s)	159, 284
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	112
BssMI	GATC	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	25, 379
BstDEI	CTNAG	1 cut(s)	194
BstKTI	GATC	1 cut(s)	207
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	27
BstSFI	CTRYAG	3 cut(s)	18, 161, 226
BstV1I	GCAGC	1 cut(s)	243
Bsu36I	CCTNAGG	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	159, 284
BtsI	GCAGTG	2 cut(s)	81, 207
BtsIMutI	CAGTG	3 cut(s)	44, 81, 207
Cac8I	GCNNGC	2 cut(s)	25, 379
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	110, 282
CspAI	ACCGGT	1 cut(s)	112
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	1 cut(s)	24
CviJI	RGCY	8 cut(s)	17, 98, 122, 159, 234, 284, 294, 338
CviKI_1	RGCY	8 cut(s)	17, 98, 122, 159, 234, 284, 294, 338
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
DraIII	CACNNNGTG	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
Eco147I	AGGCCT	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	296
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	296
FaeI	CATG	1 cut(s)	27
FaiI	YATR	4 cut(s)	25, 132, 183, 351
FaqI	GGGAC	2 cut(s)	148, 344
FatI	CATG	1 cut(s)	23
Fnu4HI	GCNGC	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	232
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	1 cut(s)	232
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	159, 284
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	1 cut(s)	27
HpaII	CCGG	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	42, 79
Hpy8I	GTNNAC	2 cut(s)	42, 79
HpyAV	CCTTC	4 cut(s)	16, 85, 194, 245
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	212, 366, 381
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	5 cut(s)	52, 63, 126, 149, 330
Lsp1109I	GCAGC	1 cut(s)	243
MaeI	CTAG	1 cut(s)	123
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	180
MfeI	CAATTG	1 cut(s)	255
MhlI	GDGCHC	2 cut(s)	57, 296
MluCI	AATT	6 cut(s)	239, 250, 255, 277, 340, 368
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	5 cut(s)	63, 152, 164, 318, 320
MseI	TTAA	1 cut(s)	315
MspI	CCGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	255
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	1 cut(s)	27
NlaIV	GGNNCC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	159
PinAI	ACCGGT	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	2 cut(s)	110, 282
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	2 cut(s)	110, 282
SduI	GDGCHC	2 cut(s)	57, 296
SetI	ASST	5 cut(s)	19, 96, 144, 329, 349
SfcI	CTRYAG	3 cut(s)	18, 161, 226
SinI	GGWCC	1 cut(s)	110
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	6 cut(s)	239, 250, 255, 277, 340, 368
SseBI	AGGCCT	1 cut(s)	159
SspMI	CTAG	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	39
TasI	AATT	6 cut(s)	239, 250, 255, 277, 340, 368
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	3 cut(s)	44, 81, 214
TseI	GCWGC	1 cut(s)	231
TspDTI	ATGAA	1 cut(s)	319
TspRI	CASTG	3 cut(s)	44, 81, 214
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	1 cut(s)	27
XcmI	CCANNNNNNNNNTGG	1 cut(s)	36
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.