RLG00000015330

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011871
Physical Location & Seq
Forward (+)
64657939 .. 64659428
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015330

Sequence Viewer

Length: 984 bp
ATGGGTTCTCTTCAGGTTTTCATTTCTTCAGCAGCATTACTAGTTCTGGTTTTGGCAGCCATTGATGGAGCTCAAGCAAATACCGTGGTCAGTGGCACAGTCTTCTGTGACCAATGCAAAGACGGTGAAAGGTCCCTCTTTGATTATCCAATCTATGGAATTAAAGTACAAGTGGCATGTAGTGACAATAATGGCCAAGTGACATTGTCAAGGGAGGAGACTACCAACTGGTTTGGGAATTATGCTATGCAATTTGATGGGACACCAGATTTGAGCGGCTGTTATGCCAAGGTTTTAAGCTCAGGGCAAGGCTCATGTGGGATTCCTGCTGGCCCTGCTCAGAGTCTTAAACTTGTATTTAGGATGTTTGACATGGGAATGTATGCTGTGGACTCTTTGCTCACTCAGCCTGCTCAGCCTATGTCATTTTGCCCAAAGTCATCTAATCCTGTGCCTGCTCCTGTAACGCCGGCACCGCCTAGACAAGTAACGCCAGCCAGTCCTCCACCTTTCAGGCTTCCCCCAATTGCTCCATTGCCGCCGATGCCTCACTTGCCACCATTGCCGCCACTGCCACCGCTACCACCAATGCCACCACTGCCCTTCTTGGAACTCACAGCATGCCCACATCAGAGTTGGTCAAGGCCAGAGTACAAATGCTACTGGAGGGCAGTGAATCCAGACACAAAGGTAGCTGTTGTTTTCGGATTGCTTGCAGCAAGAAGATATGGGACTGACCTAACATTGTGGAAAGGCCTACAGGGAAGAGGAGACCCTTATAGGACTCTCCTAAGGGAAGGCATCACTGCCTTTCTCAACTCTTACAACAGTCTTCAATTTCCTTACAATACGATTGCTGTAGTGCAGCATATGAATTCGGGATTGATGGGTTCCAAGAGGAATGTCCTCTATACAGCCTTGAGGTTCATCAGAGCTAATTCAGGCAATGGCAAAGTCACTTGCAAATTTACTGCTTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

328

Amino Acids

35.47

Weight (kDa)

9.08

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 30 - 111 6.5e-13 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 472
AccB7I CCANNNNNTGG 1 cut(s) 155
AccBSI CCGCTC 1 cut(s) 276
AciI CCGC 5 cut(s) 276, 476, 539, 566, 578
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 2 cut(s) 874, 965
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 2 cut(s) 168, 653
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 836
AhlI ACTAGT 1 cut(s) 40
AluBI AGCT 4 cut(s) 71, 300, 695, 935
AluI AGCT 4 cut(s) 71, 300, 695, 935
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 2 cut(s) 212, 765
AoxI GGCC 4 cut(s) 193, 331, 644, 754
ApeKI GCWGC 4 cut(s) 32, 56, 716, 865
ApoI RAATTY 2 cut(s) 874, 965
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
AspS9I GGNCC 2 cut(s) 132, 332
AsuHPI GGTGA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 132
AxyI CCTNAGG 1 cut(s) 791
BalI TGGCCA 1 cut(s) 195
BanI GGYRCC 1 cut(s) 472
BanII GRGCYC 1 cut(s) 73
BbsI GAAGAC 2 cut(s) 94, 824
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 4 cut(s) 44, 68, 728, 877
BccI CCATC 3 cut(s) 59, 251, 880
BcoDI GTCTC 2 cut(s) 212, 765
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 2 cut(s) 41, 480
BfmI CTRYAG 2 cut(s) 758, 858
BisI GCNGC 7 cut(s) 33, 57, 277, 539, 566, 717, 866
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 7 cut(s) 34, 58, 278, 540, 567, 718, 867
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 2 cut(s) 132, 332
BmiI GGNNCC 3 cut(s) 134, 474, 892
BmsI GCATC 2 cut(s) 534, 810
BpiI GAAGAC 2 cut(s) 94, 824
BpmI CTGGAG 1 cut(s) 685
Bpu10I CCTNAGC 1 cut(s) 301
Bpu1102I GCTNAGC 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 57, 940
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 2 cut(s) 84, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse118I RCCGGY 1 cut(s) 469
Bse1I ACTGG 3 cut(s) 233, 498, 668
Bse21I CCTNAGG 1 cut(s) 791
Bse3DI GCAATG 3 cut(s) 533, 560, 952
BseDI CCNNGG 2 cut(s) 84, 288
BseGI GGATG 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMI GCAATG 3 cut(s) 533, 560, 952
BseMII CTCAG 4 cut(s) 315, 353, 419, 428
BseNI ACTGG 3 cut(s) 233, 498, 668
BseRI GAGGAG 2 cut(s) 230, 783
BseXI GCAGC 4 cut(s) 44, 68, 728, 877
BsgI GTGCAG 1 cut(s) 884
BshFI GGCC 4 cut(s) 195, 333, 646, 756
BshNI GGYRCC 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 470
BslFI GGGAC 3 cut(s) 118, 274, 745
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 2 cut(s) 212, 765
BsmFI GGGAC 3 cut(s) 118, 274, 745
BsnI GGCC 4 cut(s) 195, 333, 646, 756
Bso31I GGTCTC 1 cut(s) 765
Bsp1286I GDGCHC 1 cut(s) 73
Bsp1720I GCTNAGC 1 cut(s) 414
BspACI CCGC 5 cut(s) 276, 476, 539, 566, 578
BspANI GGCC 4 cut(s) 195, 333, 646, 756
BspCNI CTCAG 4 cut(s) 314, 352, 418, 427
BspLI GGNNCC 3 cut(s) 134, 474, 892
BspT107I GGYRCC 1 cut(s) 472
BspTNI GGTCTC 1 cut(s) 765
BsrBI CCGCTC 1 cut(s) 276
BsrDI GCAATG 3 cut(s) 533, 560, 952
BsrFI RCCGGY 1 cut(s) 469
BsrI ACTGG 3 cut(s) 233, 498, 668
BssAI RCCGGY 1 cut(s) 469
BssECI CCNNGG 2 cut(s) 84, 288
BssT1I CCWWGG 1 cut(s) 288
Bst4CI ACNGT 4 cut(s) 85, 100, 125, 830
Bst6I CTCTTC 2 cut(s) 15, 760
BstC8I GCNNGC 8 cut(s) 331, 411, 456, 471, 495, 622, 714, 976
BstDEI CTNAG 5 cut(s) 301, 339, 405, 414, 791
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 369
BstMAI GTCTC 2 cut(s) 212, 765
BstMWI GCNNNNNNNGC 9 cut(s) 335, 406, 415, 475, 544, 553, 562, 571, 598
BstNSI RCATGY 2 cut(s) 180, 624
BstSFI CTRYAG 2 cut(s) 758, 858
BstV1I GCAGC 4 cut(s) 44, 68, 728, 877
BstV2I GAAGAC 2 cut(s) 94, 824
Bsu36I CCTNAGG 1 cut(s) 791
BsuRI GGCC 4 cut(s) 195, 333, 646, 756
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 369
BtsI GCAGTG 4 cut(s) 569, 596, 678, 804
BtsIMutI CAGTG 5 cut(s) 97, 569, 596, 678, 804
Cac8I GCNNGC 8 cut(s) 331, 411, 456, 471, 495, 622, 714, 976
Cfr10I RCCGGY 1 cut(s) 469
Cfr13I GGNCC 2 cut(s) 132, 332
Csp6I GTAC 2 cut(s) 167, 652
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 4 cut(s) 177, 315, 373, 621
CviQI GTAC 2 cut(s) 167, 652
DdeI CTNAG 5 cut(s) 301, 339, 405, 414, 791
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 15, 760
EarI CTCTTC 2 cut(s) 15, 760
Ecl136II GAGCTC 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 288
Eco147I AGGCCT 1 cut(s) 756
Eco24I GRGCYC 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 12
Eco81I CCTNAGG 1 cut(s) 791
EcoICRI GAGCTC 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 874
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 4 cut(s) 180, 318, 376, 624
FaqI GGGAC 3 cut(s) 118, 274, 745
FatI CATG 4 cut(s) 176, 314, 372, 620
FauNDI CATATG 1 cut(s) 870
Fnu4HI GCNGC 7 cut(s) 33, 57, 277, 539, 566, 717, 866
FokI GGATG 1 cut(s) 376
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 7 cut(s) 33, 57, 277, 539, 566, 717, 866
FspBI CTAG 2 cut(s) 41, 480
GluI GCNGC 7 cut(s) 33, 57, 277, 539, 566, 717, 866
GsuI CTGGAG 1 cut(s) 685
HaeIII GGCC 4 cut(s) 195, 333, 646, 756
HapII CCGG 1 cut(s) 470
Hin1II CATG 4 cut(s) 180, 318, 376, 624
HinfI GANTC 5 cut(s) 322, 343, 392, 676, 784
HpaII CCGG 1 cut(s) 470
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 4 cut(s) 342, 633, 707, 932
Hpy188III TCNNGA 2 cut(s) 680, 879
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 2 cut(s) 613, 791
HpyCH4III ACNGT 4 cut(s) 85, 100, 125, 830
HpyCH4V TGCA 6 cut(s) 117, 250, 716, 865, 963, 978
HpyF10VI GCNNNNNNNGC 9 cut(s) 335, 406, 415, 475, 544, 553, 562, 571, 598
HpyF3I CTNAG 5 cut(s) 301, 339, 405, 414, 791
Hsp92II CATG 4 cut(s) 180, 318, 376, 624
KroI GCCGGC 1 cut(s) 469
KroNI GCCGGC 1 cut(s) 471
LmnI GCTCC 3 cut(s) 68, 463, 535
Lsp1109I GCAGC 4 cut(s) 44, 68, 728, 877
LweI GCATC 2 cut(s) 534, 810
MaeI CTAG 2 cut(s) 41, 480
MaeIII GTNAC 6 cut(s) 107, 182, 199, 463, 487, 955
MbiI CCGCTC 1 cut(s) 276
MboII GAAGA 5 cut(s) 18, 94, 735, 777, 824
MfeI CAATTG 1 cut(s) 525
MhlI GDGCHC 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 8 cut(s) 159, 238, 251, 525, 836, 874, 937, 965
MluNI TGGCCA 1 cut(s) 195
MlyI GAGTC 3 cut(s) 352, 386, 778
MnlI CCTC 9 cut(s) 146, 208, 513, 558, 660, 761, 891, 915, 917
Mox20I TGGCCA 1 cut(s) 195
MroNI GCCGGC 1 cut(s) 469
MscI TGGCCA 1 cut(s) 195
MseI TTAA 3 cut(s) 162, 296, 348
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 195
MspI CCGG 1 cut(s) 470
MunI CAATTG 1 cut(s) 525
MwoI GCNNNNNNNGC 9 cut(s) 335, 406, 415, 475, 544, 553, 562, 571, 598
NaeI GCCGGC 1 cut(s) 471
NdeI CATATG 1 cut(s) 870
NgoMIV GCCGGC 1 cut(s) 469
NlaIII CATG 4 cut(s) 180, 318, 376, 624
NlaIV GGNNCC 3 cut(s) 134, 474, 892
NmuCI GTSAC 4 cut(s) 107, 182, 199, 955
NspI RCATGY 2 cut(s) 180, 624
PaeI GCATGC 1 cut(s) 624
PceI AGGCCT 1 cut(s) 756
PdiI GCCGGC 1 cut(s) 471
PfeI GAWTC 2 cut(s) 322, 676
PflFI GACNNNGTC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 155
PkrI GCNGC 7 cut(s) 34, 58, 278, 540, 567, 718, 867
PleI GAGTC 3 cut(s) 351, 386, 778
PpsI GAGTC 3 cut(s) 351, 386, 778
PpuMI RGGWCCY 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 73
Psp5II RGGWCCY 1 cut(s) 132
PspN4I GGNNCC 3 cut(s) 134, 474, 892
PspPI GGNCC 2 cut(s) 132, 332
PspPPI RGGWCCY 1 cut(s) 132
PsyI GACNNNGTC 1 cut(s) 205
RsaI GTAC 2 cut(s) 168, 653
RsaNI GTAC 2 cut(s) 167, 652
RseI CAYNNNNRTG 1 cut(s) 377
SacI GAGCTC 1 cut(s) 73
SaqAI TTAA 3 cut(s) 162, 296, 348
SatI GCNGC 7 cut(s) 33, 57, 277, 539, 566, 717, 866
Sau96I GGNCC 2 cut(s) 132, 332
SchI GAGTC 3 cut(s) 352, 386, 778
SduI GDGCHC 1 cut(s) 73
SfaNI GCATC 2 cut(s) 534, 810
SfcI CTRYAG 2 cut(s) 758, 858
SinI GGWCC 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 72, 919
SmoI CTYRAG 2 cut(s) 72, 919
SpeI ACTAGT 1 cut(s) 40
SphI GCATGC 1 cut(s) 624
Sse9I AATT 8 cut(s) 159, 238, 251, 525, 836, 874, 937, 965
SseBI AGGCCT 1 cut(s) 756
SsiI CCGC 5 cut(s) 276, 476, 539, 566, 578
SspMI CTAG 2 cut(s) 41, 480
SstI GAGCTC 1 cut(s) 73
StuI AGGCCT 1 cut(s) 756
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 4 cut(s) 85, 100, 125, 830
TasI AATT 8 cut(s) 159, 238, 251, 525, 836, 874, 937, 965
TatI WGTACW 2 cut(s) 166, 651
TauI GCSGC 3 cut(s) 279, 541, 568
TfiI GAWTC 2 cut(s) 322, 676
Tru1I TTAA 3 cut(s) 162, 296, 348
Tru9I TTAA 3 cut(s) 162, 296, 348
TscAI CASTG 5 cut(s) 97, 576, 603, 678, 811
TseFI GTSAC 4 cut(s) 107, 182, 199, 955
TseI GCWGC 4 cut(s) 32, 56, 716, 865
Tsp45I GTSAC 4 cut(s) 107, 182, 199, 955
TspDTI ATGAA 3 cut(s) 10, 887, 916
TspRI CASTG 5 cut(s) 97, 576, 603, 678, 811
Tth111I GACNNNGTC 1 cut(s) 205
Van91I CCANNNNNTGG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 132
XapI RAATTY 2 cut(s) 874, 965
XceI RCATGY 2 cut(s) 180, 624
XcmI CCANNNNNNNNNTGG 1 cut(s) 633
XspI CTAG 2 cut(s) 41, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.