Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009252.1

Orthogroup ID

OG0011871

Physical Location & Seq

Genomic Coordinates Reverse (-)

22350 .. 27232

Gene Structure 4883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009252.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgatggaagaattgagattggatcccaaggaaaacaagttgagacagaacaaggacgaagaaaaagctaagctcctcaaagtccttactttgagagacgaagaggtgcagaaggctgagattacgaacatcgtcgaagcggcactgtttctttggagttggacaaggccagagtacaaatgctactggagggcagtgaatccagacacaaaggtagctgttgttttcggattgcttgcagcaagaagatatgggactgacctaacattgtggcaaggcctacagggaagaggagacccttataggactctcctaagggaaggcatcactgcctttctcaactcctacaacagtcttcaatttccttacaataccattgctgttgtgcagcatatgaattctggattgatgggttccgagaggaatgtcctctatacagccttgaggttcatcagggctaattcaggctatggcaaagtcacctgcaaatttacttcttgcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

168

Amino Acids

19.41

Weight (kDa)

9.38

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16630
fragaria_vesca	FvH4_2g01740
malus_domestica	MD05G1116900.v1.1 MD10G1120000.v1.1 MD10G1120100.v1.1
prunus_persica	Prupe.8G161400_v2.0.a1 Prupe.8G161400_v2.0.a1
pyrus_communis	pycom05g11120 pycom10g10340
rosa_chinensis	RchiOBHm_Chr6g0244771
rosa_laevigata	RLG00000015330
rosa_multiflora	Rmu_sc0002064.1_g000006 Rmu_sc0009252.1_g000008 Rmu_sc0012997.1_g000003
rosa_roxburghii	Rroxscaffold_7G00215510
rosa_rugosa	Rorug05G0510500
rosa_samantha	Rh6AG025700 Rh6BG021400
rosa_wichuraiana	Rw6G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	491
Acc36I	ACCTGC	1 cut(s)	491
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	2 cut(s)	17, 30
AcsI	RAATTY	2 cut(s)	397, 488
AfaI	GTAC	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	359
AluBI	AGCT	3 cut(s)	68, 73, 218
AluI	AGCT	3 cut(s)	68, 73, 218
Alw26I	GTCTC	3 cut(s)	37, 90, 288
AlwI	GGATC	2 cut(s)	17, 30
AoxI	GGCC	2 cut(s)	167, 277
ApeKI	GCWGC	2 cut(s)	239, 388
ApoI	RAATTY	2 cut(s)	397, 488
AsuHPI	GGTGA	1 cut(s)	472
AxyI	CCTNAGG	1 cut(s)	314
BamHI	GGATCC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	347
BbvI	GCAGC	2 cut(s)	251, 400
BccI	CCATC	1 cut(s)	403
BcoDI	GTCTC	3 cut(s)	37, 90, 288
BfmI	CTRYAG	1 cut(s)	281
BfuAI	ACCTGC	1 cut(s)	491
BisI	GCNGC	3 cut(s)	141, 240, 389
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	3 cut(s)	142, 241, 390
BmiI	GGNNCC	2 cut(s)	24, 415
BmsI	GCATC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	347
BpmI	CTGGAG	1 cut(s)	208
Bpu1102I	GCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	191
Bse21I	CCTNAGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	2 cut(s)	65, 306
BseXI	GCAGC	2 cut(s)	251, 400
BsgI	GTGCAG	2 cut(s)	128, 407
BshFI	GGCC	2 cut(s)	169, 279
BslFI	GGGAC	1 cut(s)	268
BsmAI	GTCTC	3 cut(s)	37, 90, 288
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	169, 279
Bso31I	GGTCTC	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	22
Bsp1720I	GCTNAGC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	2 cut(s)	169, 279
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	24, 415
BspMI	ACCTGC	1 cut(s)	491
BspPI	GGATC	2 cut(s)	17, 30
BspTNI	GGTCTC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	147, 353
Bst6I	CTCTTC	2 cut(s)	96, 283
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	69, 117, 314
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	3 cut(s)	37, 90, 288
BstMBI	GATC	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	281
BstV1I	GCAGC	2 cut(s)	251, 400
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
Bsu36I	CCTNAGG	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	169, 279
BtsI	GCAGTG	2 cut(s)	201, 327
BtsIMutI	CAGTG	3 cut(s)	143, 201, 327
BveI	ACCTGC	1 cut(s)	491
Cac8I	GCNNGC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	175
CviJI	RGCY	9 cut(s)	68, 73, 116, 169, 218, 279, 440, 458, 468
CviKI_1	RGCY	9 cut(s)	68, 73, 116, 169, 218, 279, 440, 458, 468
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	3 cut(s)	69, 117, 314
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Eam1104I	CTCTTC	2 cut(s)	96, 283
EarI	CTCTTC	2 cut(s)	96, 283
Eco130I	CCWWGG	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	288
Eco81I	CCTNAGG	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	90
FaiI	YATR	6 cut(s)	252, 303, 393, 395, 435, 471
FaqI	GGGAC	1 cut(s)	268
FauNDI	CATATG	1 cut(s)	393
Fnu4HI	GCNGC	3 cut(s)	141, 240, 389
Fsp4HI	GCNGC	3 cut(s)	141, 240, 389
GluI	GCNGC	3 cut(s)	141, 240, 389
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	169, 279
HinfI	GANTC	2 cut(s)	199, 307
HphI	GGTGA	1 cut(s)	472
Hpy188I	TCNGA	2 cut(s)	230, 418
Hpy188III	TCNNGA	2 cut(s)	203, 402
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	106, 314
HpyCH4III	ACNGT	2 cut(s)	147, 353
HpyCH4V	TGCA	5 cut(s)	109, 239, 388, 486, 501
HpyF3I	CTNAG	3 cut(s)	69, 117, 314
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	8 cut(s)	172, 183, 216, 269, 387, 439, 450, 496
Lsp1109I	GCAGC	2 cut(s)	251, 400
LweI	GCATC	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	6 cut(s)	20, 71, 113, 258, 300, 347
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	5 cut(s)	11, 359, 397, 460, 488
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	7 cut(s)	86, 97, 183, 284, 414, 438, 440
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	24, 415
NmuCI	GTSAC	1 cut(s)	478
PaqCI	CACCTGC	1 cut(s)	491
PceI	AGGCCT	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	142, 241, 390
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	24, 415
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SatI	GCNGC	3 cut(s)	141, 240, 389
Sau3AI	GATC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	301
SetI	ASST	8 cut(s)	70, 75, 108, 216, 220, 264, 449, 485
SfaNI	GCATC	1 cut(s)	333
SfcI	CTRYAG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
Sse9I	AATT	5 cut(s)	11, 359, 397, 460, 488
SseBI	AGGCCT	1 cut(s)	279
SsiI	CCGC	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	147, 353
TaqI	TCGA	1 cut(s)	135
TasI	AATT	5 cut(s)	11, 359, 397, 460, 488
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	3 cut(s)	150, 201, 334
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	2 cut(s)	239, 388
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	410, 439
TspRI	CASTG	3 cut(s)	150, 201, 334
XapI	RAATTY	2 cut(s)	397, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.