FvH4_2g01740

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011871
Physical Location & Seq
Reverse (-)
1526814 .. 1528771
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01740.t1

Sequence Viewer

Length: 1074 bp
ATGGGTTCTCTTCAGATTTTCCTTTCTGCAGCAGCATTACTAGTTCTGGTTTTGGCAGCCATTGATGGAGCTCAAGCAGATACCATGGTCAGTGGCACAGTCTTCTGTGACCAATGCAAAGATGGTGAAAGGTCCCTCTTTGATTATCCAGTATATGGAATTAAAGTACAAGTGGCATGTAGTGACAGTAATGGCCAAGTGACAATGTCAAGGGAGGAGACTACCAATTGGTTTGGAAACTATGCTGTGAAATTTGATGGGACACCAGATTTGAGTGGCTGTTATGCCAAGGTTTCAAGCTTAGGGCAAGGCTCATGTGGGATTCCTGCTGGTCCTGCTCAAAGTCTCAAACTTGTGTTTAGGATGTTTGACATGGAAATGTATGCTGTGGACTCTTTGCTCACTCAGCCTGCTCAGCCTATGTCATTTTGTCCAAAGTCATCTAATCCTGTGCCTGCTCCTGTAACACCGGCACCGCCTAGACAAGTAGCACCGGATCCGCCTAGACAGGTAGCACCGGTTCCTCCTAGACAAGTAACACCGGCACCGCCTAGACAAGTAACGCCAGCCAGTCCTCCACCTTACAGGCTTCCCCCAATAGCTCCATTGCCGCCTATGCCTCACTTGCCACCACTTCCACCAATGCCTCACCTGCCACCACTGCCACCGCTACCCCCAATGCCACCAGTGCCCTTCCTGGAAGCCACAGCTTGCCCACATCAGAGTTGGACAATGCCAGAGTACAAGTGCTATTGGAGGGCAGTGAGTCCAGACACAGAGGTAGCTGTTATTTTCGGAATGCCTGCAGCACAAAGATATGGGACTGACCTAACATTGTGGCAAGGCCTACAGGGAAGAGGAGACCCTTACAGGACTCTTCTGAGGGAAGGCATCACTGCATTTCTCAACTCCTATAACAGTCTTCAATATACTTACAATACCATTGAAGTTGTGCAGCAATTGAATTCGGGGTTGATGGGTTCAAAGAGGAACGTCCTCTATACAGCCTTGAGGTTCATCAGGGCTAACTCGGGCCATGGCAAAGTCCCTTGCAAATTTACTGCTTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

358

Amino Acids

38.73

Weight (kDa)

8.48

Isoelectric Point (pI)

58.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 30 - 110 5.3e-11 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 660
Acc36I ACCTGC 1 cut(s) 660
AccB1I GGYRCC 2 cut(s) 472, 544
AccB7I CCANNNNNTGG 1 cut(s) 155
AciI CCGC 5 cut(s) 476, 500, 548, 611, 668
AclWI GGATC 2 cut(s) 491, 504
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 3 cut(s) 251, 964, 1055
AfaI GTAC 2 cut(s) 168, 743
AfiI CCNNNNNNNGG 1 cut(s) 155
AgeI ACCGGT 1 cut(s) 517
AgsI TTSAA 5 cut(s) 297, 926, 947, 964, 984
AhlI ACTAGT 1 cut(s) 40
AjnI CCWGG 1 cut(s) 696
AluBI AGCT 5 cut(s) 71, 300, 602, 710, 785
AluI AGCT 5 cut(s) 71, 300, 602, 710, 785
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 3 cut(s) 212, 350, 855
AlwI GGATC 2 cut(s) 491, 504
Ama87I CYCGRG 1 cut(s) 1030
AoxI GGCC 3 cut(s) 193, 844, 1033
ApeKI GCWGC 5 cut(s) 29, 32, 56, 806, 955
ApoI RAATTY 3 cut(s) 251, 964, 1055
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
AsiGI ACCGGT 1 cut(s) 517
AspS9I GGNCC 3 cut(s) 132, 332, 1033
AsuHPI GGTGA 2 cut(s) 137, 641
AvaI CYCGRG 1 cut(s) 1030
AvaII GGWCC 2 cut(s) 132, 332
BaeGI GKGCMC 1 cut(s) 693
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BalI TGGCCA 1 cut(s) 195
BamHI GGATCC 1 cut(s) 496
BanI GGYRCC 2 cut(s) 472, 544
BanII GRGCYC 1 cut(s) 73
BbsI GAAGAC 2 cut(s) 94, 914
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 5 cut(s) 41, 44, 68, 818, 967
BccI CCATC 4 cut(s) 59, 116, 251, 970
BciT130I CCWGG 1 cut(s) 698
BcoDI GTCTC 3 cut(s) 212, 350, 855
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 5 cut(s) 41, 480, 504, 528, 552
BfmI CTRYAG 3 cut(s) 27, 804, 848
BfuAI ACCTGC 1 cut(s) 660
BisI GCNGC 6 cut(s) 30, 33, 57, 611, 807, 956
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 6 cut(s) 31, 34, 58, 612, 808, 957
Bme1390I CCNGG 1 cut(s) 698
Bme18I GGWCC 2 cut(s) 132, 332
BmeT110I CYCGRG 1 cut(s) 1030
BmgT120I GGNCC 3 cut(s) 132, 332, 1033
BmiI GGNNCC 5 cut(s) 134, 474, 498, 522, 546
BmrFI CCNGG 1 cut(s) 698
BmsI GCATC 1 cut(s) 900
BpiI GAAGAC 2 cut(s) 94, 914
Bpu10I CCTNAGC 1 cut(s) 301
Bpu1102I GCTNAGC 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 57, 1030
BsaI GGTCTC 1 cut(s) 855
BsaJI CCNNGG 3 cut(s) 84, 288, 1036
BsaWI WCCGGW 2 cut(s) 493, 517
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse118I RCCGGY 3 cut(s) 469, 517, 541
Bse1I ACTGG 3 cut(s) 149, 570, 686
Bse3DI GCAATG 1 cut(s) 605
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 3 cut(s) 84, 288, 1036
BseGI GGATG 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMI GCAATG 1 cut(s) 605
BseMII CTCAG 3 cut(s) 419, 428, 872
BseNI ACTGG 3 cut(s) 149, 570, 686
BseRI GAGGAG 2 cut(s) 230, 873
BseSI GKGCMC 1 cut(s) 693
BseXI GCAGC 5 cut(s) 41, 44, 68, 818, 967
BsgI GTGCAG 1 cut(s) 974
BshFI GGCC 3 cut(s) 195, 846, 1035
BshNI GGYRCC 2 cut(s) 472, 544
BshTI ACCGGT 1 cut(s) 517
BsiHKAI GWGCWC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 1030
BsiSI CCGG 4 cut(s) 470, 494, 518, 542
BslFI GGGAC 4 cut(s) 118, 274, 835, 1031
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 3 cut(s) 212, 350, 855
BsmFI GGGAC 4 cut(s) 118, 274, 835, 1031
BsmI GAATGC 1 cut(s) 804
BsnI GGCC 3 cut(s) 195, 846, 1035
Bso31I GGTCTC 1 cut(s) 855
BsoBI CYCGRG 1 cut(s) 1030
Bsp1286I GDGCHC 2 cut(s) 73, 693
Bsp143I GATC 1 cut(s) 496
Bsp1720I GCTNAGC 1 cut(s) 414
Bsp19I CCATGG 2 cut(s) 84, 1036
BspACI CCGC 5 cut(s) 476, 500, 548, 611, 668
BspANI GGCC 3 cut(s) 195, 846, 1035
BspCNI CTCAG 3 cut(s) 418, 427, 873
BspLI GGNNCC 5 cut(s) 134, 474, 498, 522, 546
BspMAI CTGCAG 2 cut(s) 31, 808
BspMI ACCTGC 1 cut(s) 660
BspPI GGATC 2 cut(s) 491, 504
BspT107I GGYRCC 2 cut(s) 472, 544
BspTNI GGTCTC 1 cut(s) 855
BsrDI GCAATG 1 cut(s) 605
BsrFI RCCGGY 3 cut(s) 469, 517, 541
BsrI ACTGG 3 cut(s) 149, 570, 686
BssAI RCCGGY 3 cut(s) 469, 517, 541
BssECI CCNNGG 3 cut(s) 84, 288, 1036
BssMI GATC 1 cut(s) 496
BssT1I CCWWGG 3 cut(s) 84, 288, 1036
Bst2UI CCWGG 1 cut(s) 698
Bst4CI ACNGT 3 cut(s) 100, 188, 920
Bst6I CTCTTC 3 cut(s) 15, 850, 882
BstC8I GCNNGC 6 cut(s) 411, 456, 567, 712, 804, 1066
BstDEI CTNAG 4 cut(s) 301, 405, 414, 881
BstDSI CCRYGG 2 cut(s) 84, 1036
BstF5I GGATG 1 cut(s) 369
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 3 cut(s) 212, 350, 855
BstMBI GATC 1 cut(s) 496
BstMWI GCNNNNNNNGC 8 cut(s) 335, 406, 415, 616, 625, 652, 661, 688
BstNI CCWGG 1 cut(s) 698
BstNSI RCATGY 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 696
BstSFI CTRYAG 3 cut(s) 27, 804, 848
BstSLI GKGCMC 1 cut(s) 693
BstV1I GCAGC 5 cut(s) 41, 44, 68, 818, 967
BstV2I GAAGAC 2 cut(s) 94, 914
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BsuRI GGCC 3 cut(s) 195, 846, 1035
BtgI CCRYGG 2 cut(s) 84, 1036
BtsCI GGATG 1 cut(s) 369
BtsI GCAGTG 3 cut(s) 659, 768, 894
BtsIMutI CAGTG 5 cut(s) 97, 659, 693, 768, 894
BveI ACCTGC 1 cut(s) 660
Cac8I GCNNGC 6 cut(s) 411, 456, 567, 712, 804, 1066
Cfr10I RCCGGY 3 cut(s) 469, 517, 541
Cfr13I GGNCC 3 cut(s) 132, 332, 1033
Csp6I GTAC 2 cut(s) 167, 742
CspAI ACCGGT 1 cut(s) 517
CviAII CATG 5 cut(s) 85, 177, 315, 373, 1037
CviQI GTAC 2 cut(s) 167, 742
DdeI CTNAG 4 cut(s) 301, 405, 414, 881
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 3 cut(s) 15, 850, 882
EarI CTCTTC 3 cut(s) 15, 850, 882
EciI GGCGGA 1 cut(s) 489
Ecl136II GAGCTC 1 cut(s) 71
Eco130I CCWWGG 3 cut(s) 84, 288, 1036
Eco147I AGGCCT 1 cut(s) 846
Eco24I GRGCYC 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 855
Eco47I GGWCC 2 cut(s) 132, 332
Eco53kI GAGCTC 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 1030
EcoICRI GAGCTC 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 964
EcoRII CCWGG 1 cut(s) 696
EcoT14I CCWWGG 3 cut(s) 84, 288, 1036
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 3 cut(s) 84, 288, 1036
FaeI CATG 5 cut(s) 88, 180, 318, 376, 1040
FaqI GGGAC 4 cut(s) 118, 274, 835, 1031
FatI CATG 5 cut(s) 84, 176, 314, 372, 1036
Fnu4HI GCNGC 6 cut(s) 30, 33, 57, 611, 807, 956
FokI GGATG 1 cut(s) 376
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 6 cut(s) 30, 33, 57, 611, 807, 956
FspBI CTAG 5 cut(s) 41, 480, 504, 528, 552
GluI GCNGC 6 cut(s) 30, 33, 57, 611, 807, 956
HaeIII GGCC 3 cut(s) 195, 846, 1035
HapII CCGG 4 cut(s) 470, 494, 518, 542
Hin1II CATG 5 cut(s) 88, 180, 318, 376, 1040
HindIII AAGCTT 1 cut(s) 298
HinfI GANTC 4 cut(s) 322, 392, 766, 874
HpaII CCGG 4 cut(s) 470, 494, 518, 542
HphI GGTGA 2 cut(s) 137, 641
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 4 cut(s) 15, 723, 797, 882
Hpy188III TCNNGA 1 cut(s) 770
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 2 cut(s) 703, 881
HpyCH4III ACNGT 3 cut(s) 100, 188, 920
HpyCH4IV ACGT 1 cut(s) 993
HpyCH4V TGCA 7 cut(s) 29, 117, 806, 899, 955, 1053, 1068
HpyF10VI GCNNNNNNNGC 8 cut(s) 335, 406, 415, 616, 625, 652, 661, 688
HpyF3I CTNAG 4 cut(s) 301, 405, 414, 881
HpySE526I ACGT 1 cut(s) 993
Hsp92II CATG 5 cut(s) 88, 180, 318, 376, 1040
Kzo9I GATC 1 cut(s) 496
LmnI GCTCC 3 cut(s) 68, 463, 607
Lsp1109I GCAGC 5 cut(s) 41, 44, 68, 818, 967
LweI GCATC 1 cut(s) 900
MaeI CTAG 5 cut(s) 41, 480, 504, 528, 552
MaeII ACGT 1 cut(s) 993
MaeIII GTNAC 6 cut(s) 107, 182, 199, 463, 535, 559
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MboII GAAGA 4 cut(s) 94, 867, 869, 914
MfeI CAATTG 2 cut(s) 226, 959
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 2 cut(s) 73, 693
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 6 cut(s) 159, 226, 251, 959, 964, 1055
MluNI TGGCCA 1 cut(s) 195
MlyI GAGTC 3 cut(s) 386, 775, 868
MmeI TCCRAC 1 cut(s) 707
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 195
MspI CCGG 4 cut(s) 470, 494, 518, 542
MspR9I CCNGG 1 cut(s) 698
MunI CAATTG 2 cut(s) 226, 959
Mva1269I GAATGC 1 cut(s) 804
MvaI CCWGG 1 cut(s) 698
MwoI GCNNNNNNNGC 8 cut(s) 335, 406, 415, 616, 625, 652, 661, 688
NcoI CCATGG 2 cut(s) 84, 1036
NdeII GATC 1 cut(s) 496
NlaIII CATG 5 cut(s) 88, 180, 318, 376, 1040
NlaIV GGNNCC 5 cut(s) 134, 474, 498, 522, 546
NmuCI GTSAC 3 cut(s) 107, 182, 199
NspI RCATGY 1 cut(s) 180
PaqCI CACCTGC 1 cut(s) 660
PceI AGGCCT 1 cut(s) 846
PctI GAATGC 1 cut(s) 804
PfeI GAWTC 1 cut(s) 322
PflFI GACNNNGTC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 696
PinAI ACCGGT 1 cut(s) 517
PkrI GCNGC 6 cut(s) 31, 34, 58, 612, 808, 957
PleI GAGTC 3 cut(s) 386, 774, 868
PpsI GAGTC 3 cut(s) 386, 774, 868
PpuMI RGGWCCY 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 73
Psp5II RGGWCCY 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 696
PspGI CCWGG 1 cut(s) 696
PspN4I GGNNCC 5 cut(s) 134, 474, 498, 522, 546
PspPI GGNCC 3 cut(s) 132, 332, 1033
PspPPI RGGWCCY 1 cut(s) 132
PsrI GAACNNNNNNTAC 2 cut(s) 504, 536
PstI CTGCAG 2 cut(s) 31, 808
PsuI RGATCY 1 cut(s) 496
PsyI GACNNNGTC 1 cut(s) 205
RsaI GTAC 2 cut(s) 168, 743
RsaNI GTAC 2 cut(s) 167, 742
RseI CAYNNNNRTG 1 cut(s) 377
SacI GAGCTC 1 cut(s) 73
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 6 cut(s) 30, 33, 57, 611, 807, 956
Sau3AI GATC 1 cut(s) 496
Sau96I GGNCC 3 cut(s) 132, 332, 1033
SchI GAGTC 3 cut(s) 386, 775, 868
ScrFI CCNGG 1 cut(s) 698
SduI GDGCHC 2 cut(s) 73, 693
SfaNI GCATC 1 cut(s) 900
SfcI CTRYAG 3 cut(s) 27, 804, 848
SinI GGWCC 2 cut(s) 132, 332
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 72, 1009
SmoI CTYRAG 2 cut(s) 72, 1009
SpeI ACTAGT 1 cut(s) 40
Sse9I AATT 6 cut(s) 159, 226, 251, 959, 964, 1055
SseBI AGGCCT 1 cut(s) 846
SsiI CCGC 5 cut(s) 476, 500, 548, 611, 668
SspMI CTAG 5 cut(s) 41, 480, 504, 528, 552
SstI GAGCTC 1 cut(s) 73
StuI AGGCCT 1 cut(s) 846
StyD4I CCNGG 1 cut(s) 696
StyI CCWWGG 3 cut(s) 84, 288, 1036
TaaI ACNGT 3 cut(s) 100, 188, 920
TaiI ACGT 1 cut(s) 996
TasI AATT 6 cut(s) 159, 226, 251, 959, 964, 1055
TatI WGTACW 2 cut(s) 166, 741
TauI GCSGC 1 cut(s) 613
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 5 cut(s) 97, 666, 693, 768, 901
TseFI GTSAC 3 cut(s) 107, 182, 199
TseI GCWGC 5 cut(s) 29, 32, 56, 806, 955
Tsp45I GTSAC 3 cut(s) 107, 182, 199
TspDTI ATGAA 1 cut(s) 1006
TspRI CASTG 5 cut(s) 97, 666, 693, 768, 901
Tth111I GACNNNGTC 1 cut(s) 205
Van91I CCANNNNNTGG 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 132, 332
XapI RAATTY 3 cut(s) 251, 964, 1055
XceI RCATGY 1 cut(s) 180
XcmI CCANNNNNNNNNTGG 2 cut(s) 119, 723
XspI CTAG 5 cut(s) 41, 480, 504, 528, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.