Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012997.1

Orthogroup ID

OG0011871

Physical Location & Seq

Genomic Coordinates Forward (+)

10008 .. 11579

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012997.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atgggttctcttcaggttttcatttctgcagcagcattactagttctggttttggcagccattgatgaagctcaagcaaataccgtggtcagtggcacagtcttctgtgaccaatgcaaagatggtgaaaggtccctctttgattatccaatctatggaattaaagtacaagtggcatgtagtgacagtaatggccaagtgacaatgtcaagggaggagactaccaattggtttgggaactatgctatgcaatttgatgggacaccagatttgagcggctgttatgccaaggttttaagctcagggcaaggctcatgtgggattcctgctggccctgctcagagtcttaaacttgtgtttaggatgtttggcatgggaatgtatgctgtggactctttgctcactcagcctgctcagcctatgtcattttgcccaaagtcatctaatcctgtgcctgctcctgtaacaccggcgccgcctagacaagtagcaccggctcctcctaggcaagtaacaccggcaccgcctagacaagtaacgccagccagtcctccacctttcaggcttcccccaattgctccattgccgccaatgcctcacttgccaccattgccgccactgccaccgctaccaccaatgccaccaatgcccttcttggaactcacagcatgcccacatcagagttggacaaggccagagtacaaatgctactggagggcagtgaatccagacacaaaggtagctgttgttttcggattgcttgcagcaagaagatatgggactgacctaacattgtggcaaggcctacagggaagaggagacccttataggactctcctaagggaaggcatcactgcctttctcaactcctacaacagtcttcaatttccttacaataccattgctgttgtgcagcatatgaattctggattgatgggttccgagaggaatgtcctctatacagccttgaggttcatcagggctaattcaggctatggcaaagtcacctgcaaatttacttcttgcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

343

Amino Acids

37.22

Weight (kDa)

8.99

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16630
fragaria_vesca	FvH4_2g01740
malus_domestica	MD05G1116900.v1.1 MD10G1120000.v1.1 MD10G1120100.v1.1
prunus_persica	Prupe.8G161400_v2.0.a1 Prupe.8G161400_v2.0.a1
pyrus_communis	pycom05g11120 pycom10g10340
rosa_chinensis	RchiOBHm_Chr6g0244771
rosa_laevigata	RLG00000015330
rosa_multiflora	Rmu_sc0002064.1_g000006 Rmu_sc0009252.1_g000008 Rmu_sc0012997.1_g000003
rosa_roxburghii	Rroxscaffold_7G00215510
rosa_rugosa	Rorug05G0510500
rosa_samantha	Rh6AG025700 Rh6BG021400
rosa_wichuraiana	Rw6G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1016
Acc36I	ACCTGC	1 cut(s)	1016
AccB1I	GGYRCC	2 cut(s)	472, 520
AccB7I	CCANNNNNTGG	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	276
AciI	CCGC	6 cut(s)	276, 476, 524, 587, 614, 626
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	922, 1013
AcyI	GRCGYC	1 cut(s)	473
AfaI	GTAC	2 cut(s)	168, 701
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	884
AhlI	ACTAGT	1 cut(s)	40
AluBI	AGCT	3 cut(s)	71, 300, 743
AluI	AGCT	3 cut(s)	71, 300, 743
Alw26I	GTCTC	2 cut(s)	212, 813
AoxI	GGCC	4 cut(s)	193, 331, 692, 802
ApeKI	GCWGC	5 cut(s)	29, 32, 56, 764, 913
ApoI	RAATTY	2 cut(s)	922, 1013
ArsI	GACNNNNNNTTYG	2 cut(s)	253, 285
AspA2I	CCTAGG	1 cut(s)	503
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	2 cut(s)	132, 332
AsuHPI	GGTGA	2 cut(s)	137, 997
AvaII	GGWCC	1 cut(s)	132
AvrII	CCTAGG	1 cut(s)	503
AxyI	CCTNAGG	1 cut(s)	839
BalI	TGGCCA	1 cut(s)	195
BanI	GGYRCC	2 cut(s)	472, 520
BbsI	GAAGAC	2 cut(s)	94, 872
BbvI	GCAGC	5 cut(s)	41, 44, 68, 776, 925
BccI	CCATC	3 cut(s)	116, 251, 928
BcoDI	GTCTC	2 cut(s)	212, 813
BcuI	ACTAGT	1 cut(s)	40
BfaI	CTAG	4 cut(s)	41, 480, 504, 528
BfmI	CTRYAG	2 cut(s)	27, 806
BfoI	RGCGCY	1 cut(s)	476
BfuAI	ACCTGC	1 cut(s)	1016
BisI	GCNGC	9 cut(s)	30, 33, 57, 277, 476, 587, 614, 765, 914
BlnI	CCTAGG	1 cut(s)	503
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	9 cut(s)	31, 34, 58, 278, 477, 588, 615, 766, 915
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	132, 332
BmiI	GGNNCC	5 cut(s)	134, 474, 498, 522, 940
BmsI	GCATC	1 cut(s)	858
BpiI	GAAGAC	2 cut(s)	94, 872
BpmI	CTGGAG	1 cut(s)	733
Bpu10I	CCTNAGC	1 cut(s)	301
Bpu1102I	GCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	2 cut(s)	57, 988
BsaHI	GRCGYC	1 cut(s)	473
BsaI	GGTCTC	1 cut(s)	813
BsaJI	CCNNGG	3 cut(s)	84, 288, 503
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse118I	RCCGGY	3 cut(s)	469, 493, 517
Bse1I	ACTGG	2 cut(s)	546, 716
Bse21I	CCTNAGG	1 cut(s)	839
Bse3DI	GCAATG	3 cut(s)	581, 608, 900
BseDI	CCNNGG	3 cut(s)	84, 288, 503
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	3 cut(s)	581, 608, 900
BseMII	CTCAG	4 cut(s)	315, 353, 419, 428
BseNI	ACTGG	2 cut(s)	546, 716
BseRI	GAGGAG	3 cut(s)	230, 489, 831
BseXI	GCAGC	5 cut(s)	41, 44, 68, 776, 925
BsgI	GTGCAG	1 cut(s)	932
BshFI	GGCC	4 cut(s)	195, 333, 694, 804
BshNI	GGYRCC	2 cut(s)	472, 520
BsiSI	CCGG	3 cut(s)	470, 494, 518
BslFI	GGGAC	3 cut(s)	118, 274, 793
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	2 cut(s)	212, 813
BsmFI	GGGAC	3 cut(s)	118, 274, 793
BsnI	GGCC	4 cut(s)	195, 333, 694, 804
Bso31I	GGTCTC	1 cut(s)	813
Bsp1720I	GCTNAGC	1 cut(s)	414
BspACI	CCGC	6 cut(s)	276, 476, 524, 587, 614, 626
BspANI	GGCC	4 cut(s)	195, 333, 694, 804
BspCNI	CTCAG	4 cut(s)	314, 352, 418, 427
BspLI	GGNNCC	5 cut(s)	134, 474, 498, 522, 940
BspMAI	CTGCAG	1 cut(s)	31
BspMI	ACCTGC	1 cut(s)	1016
BspT107I	GGYRCC	2 cut(s)	472, 520
BspTNI	GGTCTC	1 cut(s)	813
BsrBI	CCGCTC	1 cut(s)	276
BsrDI	GCAATG	3 cut(s)	581, 608, 900
BsrFI	RCCGGY	3 cut(s)	469, 493, 517
BsrI	ACTGG	2 cut(s)	546, 716
BssAI	RCCGGY	3 cut(s)	469, 493, 517
BssECI	CCNNGG	3 cut(s)	84, 288, 503
BssNI	GRCGYC	1 cut(s)	473
BssT1I	CCWWGG	2 cut(s)	288, 503
Bst4CI	ACNGT	4 cut(s)	85, 100, 188, 878
Bst6I	CTCTTC	2 cut(s)	15, 808
BstACI	GRCGYC	1 cut(s)	473
BstC8I	GCNNGC	6 cut(s)	331, 411, 456, 543, 670, 762
BstDEI	CTNAG	5 cut(s)	301, 339, 405, 414, 839
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstMAI	GTCTC	2 cut(s)	212, 813
BstMWI	GCNNNNNNNGC	8 cut(s)	335, 406, 415, 592, 601, 610, 619, 646
BstNSI	RCATGY	2 cut(s)	180, 672
BstSFI	CTRYAG	2 cut(s)	27, 806
BstV1I	GCAGC	5 cut(s)	41, 44, 68, 776, 925
BstV2I	GAAGAC	2 cut(s)	94, 872
Bsu36I	CCTNAGG	1 cut(s)	839
BsuRI	GGCC	4 cut(s)	195, 333, 694, 804
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	369
BtsI	GCAGTG	3 cut(s)	617, 726, 852
BtsIMutI	CAGTG	4 cut(s)	97, 617, 726, 852
BveI	ACCTGC	1 cut(s)	1016
Cac8I	GCNNGC	6 cut(s)	331, 411, 456, 543, 670, 762
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	3 cut(s)	469, 493, 517
Cfr13I	GGNCC	2 cut(s)	132, 332
Csp6I	GTAC	2 cut(s)	167, 700
CspCI	CAANNNNNGTGG	2 cut(s)	66, 101
CviAII	CATG	4 cut(s)	177, 315, 373, 669
CviQI	GTAC	2 cut(s)	167, 700
DdeI	CTNAG	5 cut(s)	301, 339, 405, 414, 839
DinI	GGCGCC	1 cut(s)	474
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	2 cut(s)	15, 808
EarI	CTCTTC	2 cut(s)	15, 808
Eco130I	CCWWGG	2 cut(s)	288, 503
Eco147I	AGGCCT	1 cut(s)	804
Eco31I	GGTCTC	1 cut(s)	813
Eco47I	GGWCC	1 cut(s)	132
Eco81I	CCTNAGG	1 cut(s)	839
EcoO109I	RGGNCCY	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	922
EcoT14I	CCWWGG	2 cut(s)	288, 503
EgeI	GGCGCC	1 cut(s)	474
EheI	GGCGCC	1 cut(s)	474
ErhI	CCWWGG	2 cut(s)	288, 503
FaeI	CATG	4 cut(s)	180, 318, 376, 672
FaqI	GGGAC	3 cut(s)	118, 274, 793
FatI	CATG	4 cut(s)	176, 314, 372, 668
FauNDI	CATATG	1 cut(s)	918
Fnu4HI	GCNGC	9 cut(s)	30, 33, 57, 277, 476, 587, 614, 765, 914
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	9 cut(s)	30, 33, 57, 277, 476, 587, 614, 765, 914
FspBI	CTAG	4 cut(s)	41, 480, 504, 528
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	9 cut(s)	30, 33, 57, 277, 476, 587, 614, 765, 914
GsuI	CTGGAG	1 cut(s)	733
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	4 cut(s)	195, 333, 694, 804
HapII	CCGG	3 cut(s)	470, 494, 518
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	473
Hin1II	CATG	4 cut(s)	180, 318, 376, 672
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	5 cut(s)	322, 343, 392, 724, 832
HpaII	CCGG	3 cut(s)	470, 494, 518
HphI	GGTGA	2 cut(s)	137, 997
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	4 cut(s)	342, 681, 755, 943
Hpy188III	TCNNGA	2 cut(s)	728, 927
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	2 cut(s)	661, 839
HpyCH4III	ACNGT	4 cut(s)	85, 100, 188, 878
HpyCH4V	TGCA	7 cut(s)	29, 117, 250, 764, 913, 1011, 1026
HpyF10VI	GCNNNNNNNGC	8 cut(s)	335, 406, 415, 592, 601, 610, 619, 646
HpyF3I	CTNAG	5 cut(s)	301, 339, 405, 414, 839
Hsp92I	GRCGYC	1 cut(s)	473
Hsp92II	CATG	4 cut(s)	180, 318, 376, 672
HspAI	GCGC	1 cut(s)	473
KasI	GGCGCC	1 cut(s)	472
LmnI	GCTCC	3 cut(s)	463, 502, 583
Lsp1109I	GCAGC	5 cut(s)	41, 44, 68, 776, 925
LweI	GCATC	1 cut(s)	858
MaeI	CTAG	4 cut(s)	41, 480, 504, 528
MaeIII	GTNAC	7 cut(s)	107, 182, 199, 463, 511, 535, 1003
MbiI	CCGCTC	1 cut(s)	276
MboII	GAAGA	4 cut(s)	94, 783, 825, 872
MfeI	CAATTG	2 cut(s)	226, 573
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	8 cut(s)	159, 226, 251, 573, 884, 922, 985, 1013
MluNI	TGGCCA	1 cut(s)	195
Mly113I	GGCGCC	1 cut(s)	473
MlyI	GAGTC	3 cut(s)	352, 386, 826
MmeI	TCCRAC	1 cut(s)	665
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	3 cut(s)	162, 296, 348
MslI	CAYNNNNRTG	1 cut(s)	377
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	3 cut(s)	470, 494, 518
MunI	CAATTG	2 cut(s)	226, 573
MwoI	GCNNNNNNNGC	8 cut(s)	335, 406, 415, 592, 601, 610, 619, 646
NarI	GGCGCC	1 cut(s)	473
NdeI	CATATG	1 cut(s)	918
NlaIII	CATG	4 cut(s)	180, 318, 376, 672
NlaIV	GGNNCC	5 cut(s)	134, 474, 498, 522, 940
NmuCI	GTSAC	4 cut(s)	107, 182, 199, 1003
NspI	RCATGY	2 cut(s)	180, 672
PaeI	GCATGC	1 cut(s)	672
PaqCI	CACCTGC	1 cut(s)	1016
PceI	AGGCCT	1 cut(s)	804
PfeI	GAWTC	2 cut(s)	322, 724
PflFI	GACNNNGTC	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	9 cut(s)	31, 34, 58, 278, 477, 588, 615, 766, 915
PleI	GAGTC	3 cut(s)	351, 386, 826
PluTI	GGCGCC	1 cut(s)	476
PpsI	GAGTC	3 cut(s)	351, 386, 826
PpuMI	RGGWCCY	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	132
PspN4I	GGNNCC	5 cut(s)	134, 474, 498, 522, 940
PspPI	GGNCC	2 cut(s)	132, 332
PspPPI	RGGWCCY	1 cut(s)	132
PstI	CTGCAG	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	2 cut(s)	168, 701
RsaNI	GTAC	2 cut(s)	167, 700
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	3 cut(s)	162, 296, 348
SatI	GCNGC	9 cut(s)	30, 33, 57, 277, 476, 587, 614, 765, 914
Sau96I	GGNCC	2 cut(s)	132, 332
SchI	GAGTC	3 cut(s)	352, 386, 826
SfaNI	GCATC	1 cut(s)	858
SfcI	CTRYAG	2 cut(s)	27, 806
SfoI	GGCGCC	1 cut(s)	474
SgrAI	CRCCGGYG	1 cut(s)	469
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	2 cut(s)	72, 967
SmoI	CTYRAG	2 cut(s)	72, 967
SpeI	ACTAGT	1 cut(s)	40
SphI	GCATGC	1 cut(s)	672
Sse9I	AATT	8 cut(s)	159, 226, 251, 573, 884, 922, 985, 1013
SseBI	AGGCCT	1 cut(s)	804
SsiI	CCGC	6 cut(s)	276, 476, 524, 587, 614, 626
SspDI	GGCGCC	1 cut(s)	472
SspMI	CTAG	4 cut(s)	41, 480, 504, 528
StuI	AGGCCT	1 cut(s)	804
StyI	CCWWGG	2 cut(s)	288, 503
TaaI	ACNGT	4 cut(s)	85, 100, 188, 878
TasI	AATT	8 cut(s)	159, 226, 251, 573, 884, 922, 985, 1013
TatI	WGTACW	2 cut(s)	166, 699
TauI	GCSGC	4 cut(s)	279, 478, 589, 616
TfiI	GAWTC	2 cut(s)	322, 724
Tru1I	TTAA	3 cut(s)	162, 296, 348
Tru9I	TTAA	3 cut(s)	162, 296, 348
TscAI	CASTG	4 cut(s)	97, 624, 726, 859
TseFI	GTSAC	4 cut(s)	107, 182, 199, 1003
TseI	GCWGC	5 cut(s)	29, 32, 56, 764, 913
Tsp45I	GTSAC	4 cut(s)	107, 182, 199, 1003
TspDTI	ATGAA	4 cut(s)	10, 81, 935, 964
TspRI	CASTG	4 cut(s)	97, 624, 726, 859
Tth111I	GACNNNGTC	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	2 cut(s)	922, 1013
XceI	RCATGY	2 cut(s)	180, 672
XcmI	CCANNNNNNNNNTGG	2 cut(s)	119, 681
XmaJI	CCTAGG	1 cut(s)	503
XspI	CTAG	4 cut(s)	41, 480, 504, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.