Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011871

Physical Location & Seq

Genomic Coordinates Forward (+)

13622438 .. 13624246

Gene Structure 1809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTACCTCTTTGAGAGTTGGCATGTAAGAATTGCTTTCACTCCTAGTTCTTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGGATTGGCCGGAGAAATTCTTTTTTGTAGCAATTCTGGTTTTGTTTGTAGCCATTGATGCAGCTCAGGCAAATACAATGGTGAGTGGCACCGTCTTCTGTGACCAATGCAAAGATGGTGAAAGATCCCTCTTTGATTACCCCATCTATGGAGTAAAAGTACAAGTGGCATGTAGTGACAGTAATGGGCAAATCACAATGTCAAGGGAAGAGACTACAAATTGGTTTGGAAACTATGCCATCGGGTTTGATGGGACACCAGATTTGAGTGGCTGTTATGCTCAGATTTCTTCAAGCACAGGGAGTGGCTGTGTGGTTAGTGCTGGTCCTGCTCAAAGTCTTAGACTTGTGTTTAGAATGTTTGACGTGGGGATGTATGTTGTGGACTCTTTGCTCACTCAGCCTGCTCAACCCATGTCATTTTGCCCCAAGTCATCTAATCCTGTGCCTGCACCGGTAACACCGGTTAACCCTCTACCTAAACCAGTGACGCCGGCAAGCCCTCCGCCTTTTAGGCTCCCCCCAATGCCTCGATTGCCTCCACTGCCACCACTGCCCTCGTTGCCTCCAATGCCGCCGATGCCCTTCTTAGAAGCTACAGCATGCCCACATCAACAGTGGACACTACCAGAGCACAAATGCTACTGGAGGGCAGTGAACCCGAACATGAAGGTAGCCGTTATTTTTGGACCGGTGGCGGCTGGGAGATATGGGACTGACCTCACATTGTGGCAAGGCCTACAAGGAAGAGGAGACCCTTATAGGACACTCCTAAGGGAAGGGATCACTGCATTTCTCAACTCCTACAACAGCCTTCAATTTCCTTACAATTCAATTGTTGTGGTTCAGCATTTGAATTGGGGCTTGATGGGCTCCAACAGAAATGTCCTCCTTACAGGATTGAGGTTCATTAGGGCTAATTCAGGTTATGGGAAAGTCCCTTGCAAATTTACTGCTTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

353

Amino Acids

38.6

Weight (kDa)

8.65

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16630
fragaria_vesca	FvH4_2g01740
malus_domestica	MD05G1116900.v1.1 MD10G1120000.v1.1 MD10G1120100.v1.1
prunus_persica	Prupe.8G161400_v2.0.a1 Prupe.8G161400_v2.0.a1
pyrus_communis	pycom05g11120 pycom10g10340
rosa_chinensis	RchiOBHm_Chr6g0244771
rosa_laevigata	RLG00000015330
rosa_multiflora	Rmu_sc0002064.1_g000006 Rmu_sc0009252.1_g000008 Rmu_sc0012997.1_g000003
rosa_roxburghii	Rroxscaffold_7G00215510
rosa_rugosa	Rorug05G0510500
rosa_samantha	Rh6AG025700 Rh6BG021400
rosa_wichuraiana	Rw6G002170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AciI	CCGC	3 cut(s)	599, 668, 791
AclWI	GGATC	2 cut(s)	213, 884
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	2 cut(s)	110, 1040
AcyI	GRCGYC	1 cut(s)	584
AdeI	CACNNNGTG	1 cut(s)	822
AfaI	GTAC	2 cut(s)	5, 255
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgeI	ACCGGT	3 cut(s)	547, 556, 784
AgsI	TTSAA	4 cut(s)	387, 911, 927, 949
AjiI	CACGTC	1 cut(s)	460
AluBI	AGCT	2 cut(s)	158, 689
AluI	AGCT	2 cut(s)	158, 689
Alw21I	GWGCWC	1 cut(s)	729
Alw26I	GTCTC	2 cut(s)	299, 840
AlwI	GGATC	2 cut(s)	213, 884
AoxI	GGCC	2 cut(s)	101, 829
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	2 cut(s)	110, 1040
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
AsiGI	ACCGGT	3 cut(s)	547, 556, 784
AspS9I	GGNCC	2 cut(s)	419, 782
AsuHPI	GGTGA	2 cut(s)	187, 224
AvaII	GGWCC	2 cut(s)	419, 782
AxyI	CCTNAGG	1 cut(s)	866
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	968
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	729
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	5 cut(s)	203, 245, 338, 341, 955
BceAI	ACGGC	1 cut(s)	755
BcoDI	GTCTC	2 cut(s)	299, 840
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	690
BglI	GCCNNNNNGGC	1 cut(s)	607
BisI	GCNGC	3 cut(s)	156, 668, 792
BlsI	GCNGC	3 cut(s)	157, 669, 793
Bme18I	GGWCC	2 cut(s)	419, 782
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	419, 782
BmiI	GGNNCC	3 cut(s)	184, 611, 967
BmsI	GCATC	2 cut(s)	142, 663
BpiI	GAAGAC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	760
Bpu10I	CCTNAGC	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	840
BsaWI	WCCGGW	3 cut(s)	547, 556, 784
BsaXI	ACNNNNNCTCC	4 cut(s)	237, 267, 388, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse118I	RCCGGY	4 cut(s)	547, 556, 586, 784
Bse1I	ACTGG	2 cut(s)	578, 743
Bse21I	CCTNAGG	1 cut(s)	866
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMII	CTCAG	3 cut(s)	173, 389, 506
BseNI	ACTGG	2 cut(s)	578, 743
BseRI	GAGGAG	1 cut(s)	858
BseXI	GCAGC	1 cut(s)	167
BseYI	CCCAGC	1 cut(s)	794
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	2 cut(s)	103, 831
BshNI	GGYRCC	1 cut(s)	182
BshTI	ACCGGT	3 cut(s)	547, 556, 784
BsiHKAI	GWGCWC	1 cut(s)	729
BsiSI	CCGG	5 cut(s)	104, 548, 557, 587, 785
BslFI	GGGAC	3 cut(s)	361, 820, 1016
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	2 cut(s)	299, 840
BsmFI	GGGAC	3 cut(s)	361, 820, 1016
BsnI	GGCC	2 cut(s)	103, 831
Bso31I	GGTCTC	1 cut(s)	840
Bsp1286I	GDGCHC	2 cut(s)	729, 968
Bsp143I	GATC	2 cut(s)	218, 876
BspACI	CCGC	3 cut(s)	599, 668, 791
BspANI	GGCC	2 cut(s)	103, 831
BspCNI	CTCAG	3 cut(s)	172, 388, 505
BspLI	GGNNCC	3 cut(s)	184, 611, 967
BspPI	GGATC	2 cut(s)	213, 884
BspT107I	GGYRCC	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	840
BsrFI	RCCGGY	4 cut(s)	547, 556, 586, 784
BsrI	ACTGG	2 cut(s)	578, 743
BssAI	RCCGGY	4 cut(s)	547, 556, 586, 784
BssMI	GATC	2 cut(s)	218, 876
BssNI	GRCGYC	1 cut(s)	584
Bst4CI	ACNGT	3 cut(s)	187, 275, 711
Bst6I	CTCTTC	2 cut(s)	297, 835
BstACI	GRCGYC	1 cut(s)	584
BstC8I	GCNNGC	6 cut(s)	498, 543, 588, 592, 697, 1051
BstDEI	CTNAG	6 cut(s)	159, 375, 434, 492, 682, 866
BstF5I	GGATG	1 cut(s)	471
BstKTI	GATC	2 cut(s)	221, 879
BstMAI	GTCTC	2 cut(s)	299, 840
BstMBI	GATC	2 cut(s)	218, 876
BstNSI	RCATGY	3 cut(s)	26, 267, 699
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
Bsu36I	CCTNAGG	1 cut(s)	866
BsuRI	GGCC	2 cut(s)	103, 831
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	471
BtsI	GCAGTG	4 cut(s)	635, 644, 753, 879
BtsIMutI	CAGTG	6 cut(s)	585, 635, 644, 716, 753, 879
Cac8I	GCNNGC	6 cut(s)	498, 543, 588, 592, 697, 1051
Cfr10I	RCCGGY	4 cut(s)	547, 556, 586, 784
Cfr13I	GGNCC	2 cut(s)	419, 782
CseI	GACGC	1 cut(s)	592
Csp6I	GTAC	2 cut(s)	4, 254
CspAI	ACCGGT	3 cut(s)	547, 556, 784
CspCI	CAANNNNNGTGG	2 cut(s)	915, 950
CviAII	CATG	6 cut(s)	23, 94, 264, 508, 696, 760
CviQI	GTAC	2 cut(s)	4, 254
DdeI	CTNAG	6 cut(s)	159, 375, 434, 492, 682, 866
DpnI	GATC	2 cut(s)	220, 878
DpnII	GATC	2 cut(s)	218, 876
DraIII	CACNNNGTG	1 cut(s)	822
EaeI	YGGCCR	1 cut(s)	101
Eam1104I	CTCTTC	2 cut(s)	297, 835
EarI	CTCTTC	2 cut(s)	297, 835
EciI	GGCGGA	1 cut(s)	588
Eco147I	AGGCCT	1 cut(s)	831
Eco24I	GRGCYC	1 cut(s)	968
Eco31I	GGTCTC	1 cut(s)	840
Eco47I	GGWCC	2 cut(s)	419, 782
Eco81I	CCTNAGG	1 cut(s)	866
EcoT38I	GRGCYC	1 cut(s)	968
FaeI	CATG	6 cut(s)	26, 97, 267, 511, 699, 763
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FaqI	GGGAC	3 cut(s)	361, 820, 1016
FatI	CATG	6 cut(s)	22, 93, 263, 507, 695, 759
Fnu4HI	GCNGC	3 cut(s)	156, 668, 792
FokI	GGATG	1 cut(s)	478
FriOI	GRGCYC	1 cut(s)	968
Fsp4HI	GCNGC	3 cut(s)	156, 668, 792
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	3 cut(s)	156, 668, 792
GsaI	CCCAGC	1 cut(s)	798
GsuI	CTGGAG	1 cut(s)	760
HaeIII	GGCC	2 cut(s)	103, 831
HapII	CCGG	5 cut(s)	104, 548, 557, 587, 785
HgaI	GACGC	1 cut(s)	592
Hin1I	GRCGYC	1 cut(s)	584
Hin1II	CATG	6 cut(s)	26, 97, 267, 511, 699, 763
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	1 cut(s)	479
HpaI	GTTAAC	1 cut(s)	562
HpaII	CCGG	5 cut(s)	104, 548, 557, 587, 785
HphI	GGTGA	2 cut(s)	187, 224
Hpy166II	GTNNAC	4 cut(s)	478, 562, 714, 751
Hpy188I	TCNGA	1 cut(s)	378
Hpy8I	GTNNAC	4 cut(s)	478, 562, 714, 751
HpyAV	CCTTC	4 cut(s)	688, 757, 866, 917
HpyCH4III	ACNGT	3 cut(s)	187, 275, 711
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	6 cut(s)	155, 204, 545, 884, 1038, 1053
HpyF3I	CTNAG	6 cut(s)	159, 375, 434, 492, 682, 866
HpySE526I	ACGT	1 cut(s)	459
Hsp92I	GRCGYC	1 cut(s)	584
Hsp92II	CATG	6 cut(s)	26, 97, 267, 511, 699, 763
KroI	GCCGGC	1 cut(s)	586
KroNI	GCCGGC	1 cut(s)	588
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	2 cut(s)	218, 876
LmnI	GCTCC	2 cut(s)	615, 971
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	2 cut(s)	142, 663
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	4 cut(s)	194, 269, 550, 580
MalI	GATC	2 cut(s)	220, 878
MboI	GATC	2 cut(s)	218, 876
MboII	GAAGA	5 cut(s)	42, 181, 314, 375, 852
MfeI	CAATTG	1 cut(s)	927
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	729, 968
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	993
MroNI	GCCGGC	1 cut(s)	586
MseI	TTAA	1 cut(s)	561
MspI	CCGG	5 cut(s)	104, 548, 557, 587, 785
MunI	CAATTG	1 cut(s)	927
NaeI	GCCGGC	1 cut(s)	588
NdeII	GATC	2 cut(s)	218, 876
NgoMIV	GCCGGC	1 cut(s)	586
NlaIII	CATG	6 cut(s)	26, 97, 267, 511, 699, 763
NlaIV	GGNNCC	3 cut(s)	184, 611, 967
NmuCI	GTSAC	3 cut(s)	194, 269, 580
NspI	RCATGY	3 cut(s)	26, 267, 699
PaeI	GCATGC	1 cut(s)	699
PceI	AGGCCT	1 cut(s)	831
PdiI	GCCGGC	1 cut(s)	588
PinAI	ACCGGT	3 cut(s)	547, 556, 784
PkrI	GCNGC	3 cut(s)	157, 669, 793
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
PspFI	CCCAGC	1 cut(s)	794
PspN4I	GGNNCC	3 cut(s)	184, 611, 967
PspPI	GGNCC	2 cut(s)	419, 782
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	2 cut(s)	5, 255
RsaNI	GTAC	2 cut(s)	4, 254
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	3 cut(s)	156, 668, 792
Sau3AI	GATC	2 cut(s)	218, 876
Sau96I	GGNCC	2 cut(s)	419, 782
SchI	GAGTC	1 cut(s)	473
SduI	GDGCHC	2 cut(s)	729, 968
SetI	ASST	9 cut(s)	9, 160, 462, 574, 691, 768, 816, 1001, 1021
SfaNI	GCATC	2 cut(s)	142, 663
SfcI	CTRYAG	1 cut(s)	690
SinI	GGWCC	2 cut(s)	419, 782
SphI	GCATGC	1 cut(s)	699
SseBI	AGGCCT	1 cut(s)	831
SsiI	CCGC	3 cut(s)	599, 668, 791
SspMI	CTAG	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	831
TaaI	ACNGT	3 cut(s)	187, 275, 711
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	1 cut(s)	625
TatI	WGTACW	1 cut(s)	253
TauI	GCSGC	2 cut(s)	670, 794
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	6 cut(s)	585, 642, 651, 716, 753, 886
TseFI	GTSAC	3 cut(s)	194, 269, 580
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	3 cut(s)	194, 269, 580
TspDTI	ATGAA	2 cut(s)	776, 991
TspRI	CASTG	6 cut(s)	585, 642, 651, 716, 753, 886
VpaK11BI	GGWCC	2 cut(s)	419, 782
XapI	RAATTY	2 cut(s)	110, 1040
XceI	RCATGY	3 cut(s)	26, 267, 699
XcmI	CCANNNNNNNNNTGG	2 cut(s)	206, 708
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.