AT2G17880

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005017
Physical Location & Seq
Reverse (-)
7766765 .. 7768040
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17880.1

Sequence Viewer

Length: 483 bp
ATGCTTTCTTCTTCCCCAACCTTCTTCGCTACTCCATTTCTCTCTTCTTCTTCTTCTTCTTCTCCGTCGTTCTCTTCTACTTCACCACCGTCACGCATTTCCCGGATCTCGCCGTCGCTTTCTACAACCACCGCGTCCTACACCTGCGCCGAAGATCTACCGAGATTACGCCAAATCCCGCAGCGATTTTCAGCAACCGCGTCTCTCTACGAGATCCTTGAAATTCCCGTCGGCTCGACGAGTCAAGAGATCAAATCAGCTTACCGGCGACTAGCCAGGATCTGTCATCCCGATGTAGCGAGAAATAGTCGGGATAACTCGTCGGCGGACGATTTCATGAAGATCCACGCAGCGTATTGCACGCTTTCGGATCCCGAGAAACGCGCCGTTTATGATCGGAGGACTCTTCTTCGGAGCCGGCCGTTAACGGCTGGATACGGCAGTTACGGTGGACGGAATTGGGAAACCGATCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

160

Amino Acids

17.75

Weight (kDa)

9.23

Isoelectric Point (pI)

74.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 69 - 132 2.7e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 152
AccII CGCG 3 cut(s) 134, 200, 384
AciI CCGC 4 cut(s) 132, 179, 198, 326
AclWI GGATC 6 cut(s) 113, 208, 287, 337, 365, 378
AcoI YGGCCR 1 cut(s) 419
AcsI RAATTY 1 cut(s) 222
AgsI TTSAA 1 cut(s) 221
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 6 cut(s) 113, 208, 287, 337, 365, 378
AlwNI CAGNNNCTG 1 cut(s) 282
Ama87I CYCGRG 1 cut(s) 374
AoxI GGCC 1 cut(s) 419
ApeKI GCWGC 2 cut(s) 181, 350
ApoI RAATTY 1 cut(s) 222
AspLEI GCGC 2 cut(s) 149, 386
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 75
AvaI CYCGRG 1 cut(s) 374
BaeI ACNNNNGTAYC 2 cut(s) 427, 460
BamHI GGATCC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 193, 362
BceAI ACGGC 5 cut(s) 97, 371, 406, 444, 454
BciT130I CCWGG 1 cut(s) 277
BciVI GTATCC 1 cut(s) 428
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 152
BfuI GTATCC 1 cut(s) 428
BglII AGATCT 1 cut(s) 154
BisI GCNGC 2 cut(s) 182, 351
BlsI GCNGC 2 cut(s) 183, 352
Bme1390I CCNGG 2 cut(s) 103, 277
BmeT110I CYCGRG 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 372, 416
BmrFI CCNGG 2 cut(s) 103, 277
BpuMI CCSGG 1 cut(s) 103
Bse118I RCCGGY 2 cut(s) 264, 417
BseBI CCWGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 286
BseX3I CGGCCG 1 cut(s) 419
BseXI GCAGC 2 cut(s) 193, 362
Bsh1236I CGCG 3 cut(s) 134, 200, 384
Bsh1285I CGRYCG 1 cut(s) 422
BshFI GGCC 1 cut(s) 421
BsiEI CGRYCG 1 cut(s) 422
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 3 cut(s) 103, 265, 418
BsmAI GTCTC 1 cut(s) 207
BsmBI CGTCTC 1 cut(s) 207
BsnI GGCC 1 cut(s) 421
BsoBI CYCGRG 1 cut(s) 374
Bsp143I GATC 9 cut(s) 105, 154, 213, 249, 279, 342, 370, 394, 469
BspACI CCGC 4 cut(s) 132, 179, 198, 326
BspANI GGCC 1 cut(s) 421
BspFNI CGCG 3 cut(s) 134, 200, 384
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 372, 416
BspMI ACCTGC 1 cut(s) 152
BspPI GGATC 6 cut(s) 113, 208, 287, 337, 365, 378
BsrFI RCCGGY 2 cut(s) 264, 417
BssAI RCCGGY 2 cut(s) 264, 417
BssMI GATC 9 cut(s) 105, 154, 213, 249, 279, 342, 370, 394, 469
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 2 cut(s) 90, 449
Bst6I CTCTTC 3 cut(s) 49, 79, 411
BstC8I GCNNGC 2 cut(s) 362, 419
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 3 cut(s) 134, 200, 384
BstHHI GCGC 2 cut(s) 149, 386
BstKTI GATC 9 cut(s) 108, 157, 216, 252, 282, 345, 373, 397, 472
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 9 cut(s) 105, 154, 213, 249, 279, 342, 370, 394, 469
BstMCI CGRYCG 1 cut(s) 422
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 2 cut(s) 101, 275
BstUI CGCG 3 cut(s) 134, 200, 384
BstV1I GCAGC 2 cut(s) 193, 362
BstX2I RGATCY 6 cut(s) 105, 154, 213, 279, 342, 370
BstYI RGATCY 6 cut(s) 105, 154, 213, 279, 342, 370
BstZI CGGCCG 1 cut(s) 419
BsuI GTATCC 1 cut(s) 428
BsuRI GGCC 1 cut(s) 421
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 479
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 362, 419
CaiI CAGNNNCTG 1 cut(s) 282
CciI TCATGA 1 cut(s) 336
CfoI GCGC 2 cut(s) 149, 386
Cfr10I RCCGGY 2 cut(s) 264, 417
CseI GACGC 2 cut(s) 123, 189
CviAII CATG 1 cut(s) 337
CviJI RGCY 6 cut(s) 234, 260, 275, 417, 421, 431
CviKI_1 RGCY 6 cut(s) 234, 260, 275, 417, 421, 431
DpnI GATC 9 cut(s) 107, 156, 215, 251, 281, 344, 372, 396, 471
DpnII GATC 9 cut(s) 105, 154, 213, 249, 279, 342, 370, 394, 469
EaeI YGGCCR 1 cut(s) 419
EagI CGGCCG 1 cut(s) 419
Eam1104I CTCTTC 3 cut(s) 49, 79, 411
EarI CTCTTC 3 cut(s) 49, 79, 411
EciI GGCGGA 1 cut(s) 341
EclXI CGGCCG 1 cut(s) 419
Eco52I CGGCCG 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 275
Esp3I CGTCTC 1 cut(s) 207
FaeI CATG 1 cut(s) 340
FaiI YATR 2 cut(s) 338, 393
FatI CATG 1 cut(s) 336
FauI CCCGC 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 182, 351
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 2 cut(s) 182, 351
FspBI CTAG 1 cut(s) 272
GlaI GCGC 2 cut(s) 148, 385
GluI GCNGC 2 cut(s) 182, 351
HaeIII GGCC 1 cut(s) 421
HapII CCGG 3 cut(s) 103, 265, 418
HgaI GACGC 2 cut(s) 123, 189
HhaI GCGC 2 cut(s) 149, 386
Hin1II CATG 1 cut(s) 340
Hin6I GCGC 2 cut(s) 147, 384
HinP1I GCGC 2 cut(s) 147, 384
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 2 cut(s) 241, 403
HpaI GTTAAC 1 cut(s) 426
HpaII CCGG 3 cut(s) 103, 265, 418
HphI GGTGA 1 cut(s) 75
Hpy166II GTNNAC 2 cut(s) 426, 452
Hpy188I TCNGA 3 cut(s) 370, 399, 414
Hpy188III TCNNGA 5 cut(s) 245, 290, 311, 337, 374
Hpy8I GTNNAC 2 cut(s) 426, 452
Hpy99I CGWCG 5 cut(s) 70, 118, 233, 241, 325
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 90, 449
HpyCH4V TGCA 1 cut(s) 360
Hsp92II CATG 1 cut(s) 340
HspAI GCGC 2 cut(s) 147, 384
KroI GCCGGC 1 cut(s) 417
KroNI GCCGGC 1 cut(s) 419
KspAI GTTAAC 1 cut(s) 426
Kzo9I GATC 9 cut(s) 105, 154, 213, 249, 279, 342, 370, 394, 469
LmnI GCTCC 1 cut(s) 414
LpnPI CCDG 8 cut(s) 116, 157, 262, 278, 289, 417, 431, 463
Lsp1109I GCAGC 2 cut(s) 193, 362
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 90, 443
MalI GATC 9 cut(s) 107, 156, 215, 251, 281, 344, 372, 396, 471
MboI GATC 9 cut(s) 105, 154, 213, 249, 279, 342, 370, 394, 469
MflI RGATCY 6 cut(s) 105, 154, 213, 279, 342, 370
MluCI AATT 2 cut(s) 222, 457
MlyI GAGTC 2 cut(s) 250, 397
MnlI CCTC 1 cut(s) 393
MroNI GCCGGC 1 cut(s) 417
MseI TTAA 1 cut(s) 425
MslI CAYNNNNRTG 1 cut(s) 291
MspI CCGG 3 cut(s) 103, 265, 418
MspR9I CCNGG 2 cut(s) 103, 277
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 3 cut(s) 134, 200, 384
NaeI GCCGGC 1 cut(s) 419
NciI CCSGG 1 cut(s) 103
NdeII GATC 9 cut(s) 105, 154, 213, 249, 279, 342, 370, 394, 469
NgoMIV GCCGGC 1 cut(s) 417
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 2 cut(s) 372, 416
NmuCI GTSAC 1 cut(s) 90
PagI TCATGA 1 cut(s) 336
PaqCI CACCTGC 1 cut(s) 152
PdiI GCCGGC 1 cut(s) 419
PfoI TCCNGGA 1 cut(s) 101
PkrI GCNGC 2 cut(s) 183, 352
PleI GAGTC 2 cut(s) 249, 397
PpsI GAGTC 2 cut(s) 249, 397
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 2 cut(s) 372, 416
PstNI CAGNNNCTG 1 cut(s) 282
PsuI RGATCY 6 cut(s) 105, 154, 213, 279, 342, 370
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 1 cut(s) 425
SatI GCNGC 2 cut(s) 182, 351
Sau3AI GATC 9 cut(s) 105, 154, 213, 249, 279, 342, 370, 394, 469
SchI GAGTC 2 cut(s) 250, 397
ScrFI CCNGG 2 cut(s) 103, 277
SetI ASST 3 cut(s) 23, 146, 262
SmiMI CAYNNNNRTG 1 cut(s) 291
Sse9I AATT 2 cut(s) 222, 457
SsiI CCGC 4 cut(s) 132, 179, 198, 326
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 101, 275
TaaI ACNGT 2 cut(s) 90, 449
TaqI TCGA 1 cut(s) 236
TasI AATT 2 cut(s) 222, 457
Tru1I TTAA 1 cut(s) 425
Tru9I TTAA 1 cut(s) 425
TscAI CASTG 1 cut(s) 479
TseFI GTSAC 1 cut(s) 90
TseI GCWGC 2 cut(s) 181, 350
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 325, 353
TspGWI ACGGA 2 cut(s) 54, 469
TspRI CASTG 1 cut(s) 479
XapI RAATTY 1 cut(s) 222
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.