Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005017

Physical Location & Seq

Genomic Coordinates Forward (+)

17156112 .. 17157077

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G168700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCTCTCTGCTTCGACCTCGACATTCTTCGCCGCTCCAATTCTCTCCGCCACCCCTCCCCCTCCCAAAACCTCGACACGTGTACATTTCAGGCCAATAAGCGCCTTCGCCGCCGGTTCCACCTGCACCTCGGACGAGACAGCTACGGCGTCGTACCTCGGCCCTCAGAAGATGACCTCGCTGTACGAGATCCTCGGCATCCCGGCGGTCGCCACGTGTAAGGAGATCAAATCGGCGTACCGGCGATTGGCTAGGGTTTGCCACCCCGACGTGGCGGCGATCGAGCGCAAGGACACGTCGGCTGACGAGTTCATGAAGATTCATGCTGCCTACTCCACGCTGTCGGACCCCGAAAAGCGCGCCGATTACGACCGGAAGTTTATGCGCCGAAGCCGACCGTTGTCAACGGCGTCGGGATATTCCGGGTACTACACTTGCCGGAACTGGGAGACCGACCAGTGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

156

Amino Acids

17.18

Weight (kDa)

9.01

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17880 AT4G36040
fragaria_vesca	FvH4_1g11760 FvH4_2g01600
malus_domestica	MD02G1131800.v1.1 MD10G1121200.v1.1 MD15G1244700.v1.1
prunus_persica	Prupe.7G168700_v2.0.a1 Prupe.8G162800_v2.0.a1
pyrus_communis	pycom02g10270 pycom10g10440
rosa_chinensis	RchiOBHm_Chr2g0099371 RchiOBHm_Chr6g0244331
rosa_laevigata	RLG00000015366 RLG00000016876
rosa_multiflora	Rmu_sc0006898.1_g000007
rosa_roxburghii	Rroxscaffold_2G00143130 Rroxscaffold_7G00215880
rosa_rugosa	Rorug02G0078900 Rorug05G0508000.1
rosa_samantha	Rh2AG128900 Rh2BG131900 Rh2CG132700 Rh2DG132900 Rh6AG023100 Rh6BG018800 Rh6CG016100 Rh6DG017200
rosa_wichuraiana	Rw2G009920 Rw6G001910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	131
AccBSI	CCGCTC	1 cut(s)	35
AccII	CGCG	1 cut(s)	360
AciI	CCGC	5 cut(s)	33, 48, 111, 206, 275
AclWI	GGATC	1 cut(s)	184
AcvI	CACGTG	2 cut(s)	80, 216
AcyI	GRCGYC	2 cut(s)	149, 410
AfaI	GTAC	5 cut(s)	84, 155, 185, 239, 428
AfiI	CCNNNNNNNGG	3 cut(s)	247, 271, 445
AflIII	ACRYGT	4 cut(s)	77, 79, 215, 294
AjiI	CACGTC	2 cut(s)	271, 297
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw26I	GTCTC	2 cut(s)	131, 443
AlwI	GGATC	1 cut(s)	184
AoxI	GGCC	2 cut(s)	92, 160
ApeKI	GCWGC	1 cut(s)	326
AspLEI	GCGC	5 cut(s)	104, 288, 360, 362, 387
AspS9I	GGNCC	2 cut(s)	161, 346
AsuC2I	CCSGG	2 cut(s)	203, 424
AvaII	GGWCC	1 cut(s)	346
BbrPI	CACGTG	2 cut(s)	80, 216
BbvI	GCAGC	1 cut(s)	313
BceAI	ACGGC	2 cut(s)	162, 423
BcnI	CCSGG	2 cut(s)	203, 424
BcoDI	GTCTC	2 cut(s)	131, 443
BfaI	CTAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	4 cut(s)	33, 111, 276, 327
BlsI	GCNGC	4 cut(s)	34, 112, 277, 328
Bme1390I	CCNGG	2 cut(s)	203, 424
Bme18I	GGWCC	1 cut(s)	346
BmgBI	CACGTC	2 cut(s)	271, 297
BmgT120I	GGNCC	2 cut(s)	161, 346
BmiI	GGNNCC	2 cut(s)	118, 348
BmrFI	CCNGG	2 cut(s)	203, 424
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	1 cut(s)	207
BmuI	ACTGGG	1 cut(s)	454
BoxI	GACNNNNGTC	1 cut(s)	400
BpuMI	CCSGG	2 cut(s)	203, 424
BsaAI	YACGTR	2 cut(s)	80, 216
BsaHI	GRCGYC	2 cut(s)	149, 410
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	3 cut(s)	129, 157, 193
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 271, 445
Bse118I	RCCGGY	2 cut(s)	113, 240
Bse1I	ACTGG	2 cut(s)	449, 457
BseDI	CCNNGG	3 cut(s)	129, 157, 193
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	3 cut(s)	247, 271, 445
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	2 cut(s)	449, 457
BsePI	GCGCGC	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	360
Bsh1285I	CGRYCG	4 cut(s)	210, 282, 373, 398
BshFI	GGCC	2 cut(s)	94, 162
BsiEI	CGRYCG	4 cut(s)	210, 282, 373, 398
BsiSI	CCGG	6 cut(s)	114, 203, 241, 373, 423, 439
BslI	CCNNNNNNNGG	3 cut(s)	247, 271, 445
BsmAI	GTCTC	2 cut(s)	131, 443
BsnI	GGCC	2 cut(s)	94, 162
Bso31I	GGTCTC	1 cut(s)	443
Bsp1407I	TGTACA	1 cut(s)	82
Bsp143I	GATC	3 cut(s)	189, 225, 279
BspACI	CCGC	5 cut(s)	33, 48, 111, 206, 275
BspANI	GGCC	2 cut(s)	94, 162
BspCNI	CTCAG	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	118, 348
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	184
BspTNI	GGTCTC	1 cut(s)	443
BsrBI	CCGCTC	1 cut(s)	35
BsrFI	RCCGGY	2 cut(s)	113, 240
BsrGI	TGTACA	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	449, 457
BssAI	RCCGGY	2 cut(s)	113, 240
BssECI	CCNNGG	3 cut(s)	129, 157, 193
BssHII	GCGCGC	1 cut(s)	358
BssMI	GATC	3 cut(s)	189, 225, 279
BssNI	GRCGYC	2 cut(s)	149, 410
Bst4CI	ACNGT	1 cut(s)	399
BstACI	GRCGYC	2 cut(s)	149, 410
BstAUI	TGTACA	1 cut(s)	82
BstBAI	YACGTR	2 cut(s)	80, 216
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	1 cut(s)	360
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	5 cut(s)	104, 288, 360, 362, 387
BstKTI	GATC	3 cut(s)	192, 228, 282
BstMAI	GTCTC	2 cut(s)	131, 443
BstMBI	GATC	3 cut(s)	189, 225, 279
BstMCI	CGRYCG	4 cut(s)	210, 282, 373, 398
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstPAI	GACNNNNGTC	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	201, 422
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	94, 162
BtrI	CACGTC	2 cut(s)	271, 297
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	464
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	360
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	5 cut(s)	104, 288, 360, 362, 387
Cfr10I	RCCGGY	2 cut(s)	113, 240
Cfr13I	GGNCC	2 cut(s)	161, 346
CseI	GACGC	2 cut(s)	138, 399
Csp6I	GTAC	5 cut(s)	83, 154, 184, 238, 427
CviAII	CATG	2 cut(s)	313, 323
CviJI	RGCY	6 cut(s)	94, 143, 162, 251, 302, 393
CviKI_1	RGCY	6 cut(s)	94, 143, 162, 251, 302, 393
CviQI	GTAC	5 cut(s)	83, 154, 184, 238, 427
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	3 cut(s)	191, 227, 281
DpnII	GATC	3 cut(s)	189, 225, 279
EciI	GGCGGA	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	346
Eco72I	CACGTG	2 cut(s)	80, 216
FaeI	CATG	2 cut(s)	316, 326
FaiI	YATR	3 cut(s)	314, 324, 383
FatI	CATG	2 cut(s)	312, 322
Fnu4HI	GCNGC	4 cut(s)	33, 111, 276, 327
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	4 cut(s)	33, 111, 276, 327
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	5 cut(s)	103, 287, 359, 361, 386
GluI	GCNGC	4 cut(s)	33, 111, 276, 327
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	94, 162
HapII	CCGG	6 cut(s)	114, 203, 241, 373, 423, 439
HgaI	GACGC	2 cut(s)	138, 399
HhaI	GCGC	5 cut(s)	104, 288, 360, 362, 387
Hin1I	GRCGYC	2 cut(s)	149, 410
Hin1II	CATG	2 cut(s)	316, 326
Hin6I	GCGC	5 cut(s)	102, 286, 358, 360, 385
HinP1I	GCGC	5 cut(s)	102, 286, 358, 360, 385
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	1 cut(s)	319
HpaII	CCGG	6 cut(s)	114, 203, 241, 373, 423, 439
Hpy166II	GTNNAC	2 cut(s)	83, 405
Hpy188I	TCNGA	3 cut(s)	133, 168, 346
Hpy188III	TCNNGA	2 cut(s)	313, 414
Hpy8I	GTNNAC	2 cut(s)	83, 405
Hpy99I	CGWCG	4 cut(s)	154, 272, 301, 415
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4IV	ACGT	4 cut(s)	79, 215, 270, 296
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	4 cut(s)	79, 215, 270, 296
Hsp92I	GRCGYC	2 cut(s)	149, 410
Hsp92II	CATG	2 cut(s)	316, 326
HspAI	GCGC	5 cut(s)	102, 286, 358, 360, 385
Kzo9I	GATC	3 cut(s)	189, 225, 279
LmnI	GCTCC	1 cut(s)	40
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	4 cut(s)	79, 215, 270, 296
MalI	GATC	3 cut(s)	191, 227, 281
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	3 cut(s)	189, 225, 279
MboII	GAAGA	3 cut(s)	19, 181, 328
MflI	RGATCY	1 cut(s)	189
MluCI	AATT	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	9 cut(s)	28, 66, 72, 82, 139, 167, 174, 187, 203
MspI	CCGG	6 cut(s)	114, 203, 241, 373, 423, 439
MspR9I	CCNGG	2 cut(s)	203, 424
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	110
NciI	CCSGG	2 cut(s)	203, 424
NdeII	GATC	3 cut(s)	189, 225, 279
NlaIII	CATG	2 cut(s)	316, 326
NlaIV	GGNNCC	2 cut(s)	118, 348
NmeAIII	GCCGAG	2 cut(s)	138, 174
PagI	TCATGA	1 cut(s)	312
PaqCI	CACCTGC	1 cut(s)	131
PauI	GCGCGC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	4 cut(s)	34, 112, 277, 328
Ple19I	CGATCG	1 cut(s)	282
PmaCI	CACGTG	2 cut(s)	80, 216
PmlI	CACGTG	2 cut(s)	80, 216
Ppu21I	YACGTR	2 cut(s)	80, 216
PshAI	GACNNNNGTC	1 cut(s)	400
PspCI	CACGTG	2 cut(s)	80, 216
PspN4I	GGNNCC	2 cut(s)	118, 348
PspPI	GGNCC	2 cut(s)	161, 346
PsuI	RGATCY	1 cut(s)	189
PteI	GCGCGC	1 cut(s)	358
PvuI	CGATCG	1 cut(s)	282
RsaI	GTAC	5 cut(s)	84, 155, 185, 239, 428
RsaNI	GTAC	5 cut(s)	83, 154, 184, 238, 427
SatI	GCNGC	4 cut(s)	33, 111, 276, 327
Sau3AI	GATC	3 cut(s)	189, 225, 279
Sau96I	GGNCC	2 cut(s)	161, 346
ScrFI	CCNGG	2 cut(s)	203, 424
SfaNI	GCATC	1 cut(s)	207
SinI	GGWCC	1 cut(s)	346
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	5 cut(s)	33, 48, 111, 206, 275
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	201, 422
TaaI	ACNGT	1 cut(s)	399
TaiI	ACGT	4 cut(s)	82, 218, 273, 299
TaqI	TCGA	4 cut(s)	14, 20, 74, 282
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	1 cut(s)	39
TatI	WGTACW	1 cut(s)	82
TauI	GCSGC	3 cut(s)	35, 113, 278
TfiI	GAWTC	1 cut(s)	319
TscAI	CASTG	1 cut(s)	464
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	3 cut(s)	301, 311, 329
TspRI	CASTG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	346
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.